data_1FND # _model_server_result.job_id F4yGOW32KzdXJYmXsAFKUg _model_server_result.datetime_utc '2024-11-14 09:06:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fnd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":316}' # _entry.id 1FND # _exptl.entry_id 1FND _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-2'-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100 _cell.angle_gamma 90 _cell.entry_id 1FND _cell.length_a 90.7 _cell.length_b 57.7 _cell.length_c 68.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FND _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id A2P _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-2'-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P A2P doub 1 n n P1 O2P A2P sing 2 n n P1 O3P A2P sing 3 n n P1 O2' A2P sing 4 n n O2P HOP2 A2P sing 5 n n O3P HOP3 A2P sing 6 n n P2 O4P A2P doub 7 n n P2 O5P A2P sing 8 n n P2 O6P A2P sing 9 n n P2 O5' A2P sing 10 n n O5P HOP5 A2P sing 11 n n O6P HOP6 A2P sing 12 n n O5' C5' A2P sing 13 n n C5' C4' A2P sing 14 n n C5' "H5'1" A2P sing 15 n n C5' "H5'2" A2P sing 16 n n C4' O4' A2P sing 17 n n C4' C3' A2P sing 18 n n C4' H4' A2P sing 19 n n O4' C1' A2P sing 20 n n C3' O3' A2P sing 21 n n C3' C2' A2P sing 22 n n C3' H3' A2P sing 23 n n O3' HO3' A2P sing 24 n n C2' O2' A2P sing 25 n n C2' C1' A2P sing 26 n n C2' H2' A2P sing 27 n n C1' N9 A2P sing 28 n n C1' H1' A2P sing 29 n n N9 C8 A2P sing 30 n y N9 C4 A2P sing 31 n y C8 N7 A2P doub 32 n y C8 H8 A2P sing 33 n n N7 C5 A2P sing 34 n y C5 C6 A2P sing 35 n y C5 C4 A2P doub 36 n y C6 N6 A2P sing 37 n n C6 N1 A2P doub 38 n y N6 HN61 A2P sing 39 n n N6 HN62 A2P sing 40 n n N1 C2 A2P sing 41 n y C2 N3 A2P doub 42 n y C2 H2 A2P sing 43 n n N3 C4 A2P sing 44 n y # _atom_sites.entry_id 1FND _atom_sites.fract_transf_matrix[1][1] 0.011025 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001944 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017331 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 317 317 SO4 SO4 . C 3 FAD A 1 315 315 FAD FAD . D 4 A2P A 1 316 316 A2P A2P . E 5 HOH A 1 401 401 HOH HOH . E 5 HOH A 2 402 402 HOH HOH . E 5 HOH A 3 403 403 HOH HOH . E 5 HOH A 4 404 404 HOH HOH . E 5 HOH A 5 405 405 HOH HOH . E 5 HOH A 6 406 406 HOH HOH . E 5 HOH A 7 407 407 HOH HOH . E 5 HOH A 8 408 408 HOH HOH . E 5 HOH A 9 409 409 HOH HOH . E 5 HOH A 10 410 410 HOH HOH . E 5 HOH A 11 411 411 HOH HOH . E 5 HOH A 12 412 412 HOH HOH . E 5 HOH A 13 413 413 HOH HOH . E 5 HOH A 14 414 414 HOH HOH . E 5 HOH A 15 415 415 HOH HOH . E 5 HOH A 16 416 416 HOH HOH . E 5 HOH A 17 417 417 HOH HOH . E 5 HOH A 18 418 418 HOH HOH . E 5 HOH A 19 419 419 HOH HOH . E 5 HOH A 20 420 420 HOH HOH . E 5 HOH A 21 421 421 HOH HOH . E 5 HOH A 22 422 422 HOH HOH . E 5 HOH A 23 423 423 HOH HOH . E 5 HOH A 24 424 424 HOH HOH . E 5 HOH A 25 425 425 HOH HOH . E 5 HOH A 26 426 426 HOH HOH . E 5 HOH A 27 427 427 HOH HOH . E 5 HOH A 28 428 428 HOH HOH . E 5 HOH A 29 429 429 HOH HOH . E 5 HOH A 30 430 430 HOH HOH . E 5 HOH A 31 431 431 HOH HOH . E 5 HOH A 32 432 432 HOH HOH . E 5 HOH A 33 433 433 HOH HOH . E 5 HOH A 34 434 434 HOH HOH . E 5 HOH A 35 435 435 HOH HOH . E 5 HOH A 36 436 436 HOH HOH . E 5 HOH A 37 437 437 HOH HOH . E 5 HOH A 38 438 438 HOH HOH . E 5 HOH A 39 439 439 HOH HOH . E 5 HOH A 40 440 440 HOH HOH . E 5 HOH A 41 441 441 HOH HOH . E 5 HOH A 42 442 442 HOH HOH . E 5 HOH A 43 443 443 HOH HOH . E 5 HOH A 44 444 444 HOH HOH . E 5 HOH A 45 445 445 HOH HOH . E 5 HOH A 46 446 446 HOH HOH . E 5 HOH A 47 447 447 HOH HOH . E 5 HOH A 48 448 448 HOH HOH . E 5 HOH A 49 449 449 HOH HOH . E 5 HOH A 50 450 450 HOH HOH . E 5 HOH A 51 451 451 HOH HOH . E 5 HOH A 52 452 452 HOH HOH . E 5 HOH A 53 453 453 HOH HOH . E 5 HOH A 54 454 454 HOH HOH . E 5 HOH A 55 455 455 HOH HOH . E 5 HOH A 56 456 456 HOH HOH . E 5 HOH A 57 457 457 HOH HOH . E 5 HOH A 58 458 458 HOH HOH . E 5 HOH A 59 459 459 HOH HOH . E 5 HOH A 60 460 460 HOH HOH . E 5 HOH A 61 461 461 HOH HOH . E 5 HOH A 62 462 462 HOH HOH . E 5 HOH A 63 463 463 HOH HOH . E 5 HOH A 64 464 464 HOH HOH . E 5 HOH A 65 465 465 HOH HOH . E 5 HOH A 66 466 466 HOH HOH . E 5 HOH A 67 467 467 HOH HOH . E 5 HOH A 68 468 468 HOH HOH . E 5 HOH A 69 469 469 HOH HOH . E 5 HOH A 70 470 472 HOH HOH . E 5 HOH A 71 471 473 HOH HOH . E 5 HOH A 72 472 474 HOH HOH . E 5 HOH A 73 473 475 HOH HOH . E 5 HOH A 74 474 476 HOH HOH . E 5 HOH A 75 475 477 HOH HOH . E 5 HOH A 76 476 478 HOH HOH . E 5 HOH A 77 477 479 HOH HOH . E 5 HOH A 78 478 480 HOH HOH . E 5 HOH A 79 479 481 HOH HOH . E 5 HOH A 80 480 482 HOH HOH . E 5 HOH A 81 481 483 HOH HOH . E 5 HOH A 82 482 485 HOH HOH . E 5 HOH A 83 483 486 HOH HOH . E 5 HOH A 84 484 487 HOH HOH . E 5 HOH A 85 485 488 HOH HOH . E 5 HOH A 86 486 489 HOH HOH . E 5 HOH A 87 487 490 HOH HOH . E 5 HOH A 88 488 491 HOH HOH . E 5 HOH A 89 489 492 HOH HOH . E 5 HOH A 90 490 493 HOH HOH . E 5 HOH A 91 491 494 HOH HOH . E 5 HOH A 92 492 495 HOH HOH . E 5 HOH A 93 493 496 HOH HOH . E 5 HOH A 94 494 497 HOH HOH . E 5 HOH A 95 495 498 HOH HOH . E 5 HOH A 96 496 499 HOH HOH . E 5 HOH A 97 497 500 HOH HOH . E 5 HOH A 98 498 501 HOH HOH . E 5 HOH A 99 499 502 HOH HOH . E 5 HOH A 100 500 503 HOH HOH . E 5 HOH A 101 501 505 HOH HOH . E 5 HOH A 102 502 506 HOH HOH . E 5 HOH A 103 503 507 HOH HOH . E 5 HOH A 104 504 508 HOH HOH . E 5 HOH A 105 505 509 HOH HOH . E 5 HOH A 106 506 510 HOH HOH . E 5 HOH A 107 507 511 HOH HOH . E 5 HOH A 108 508 512 HOH HOH . E 5 HOH A 109 509 513 HOH HOH . E 5 HOH A 110 510 514 HOH HOH . E 5 HOH A 111 511 515 HOH HOH . E 5 HOH A 112 512 516 HOH HOH . E 5 HOH A 113 513 517 HOH HOH . E 5 HOH A 114 514 518 HOH HOH . E 5 HOH A 115 515 519 HOH HOH . E 5 HOH A 116 516 520 HOH HOH . E 5 HOH A 117 517 521 HOH HOH . E 5 HOH A 118 518 522 HOH HOH . E 5 HOH A 119 519 524 HOH HOH . E 5 HOH A 120 520 526 HOH HOH . E 5 HOH A 121 521 527 HOH HOH . E 5 HOH A 122 522 529 HOH HOH . E 5 HOH A 123 523 530 HOH HOH . E 5 HOH A 124 524 532 HOH HOH . E 5 HOH A 125 525 533 HOH HOH . E 5 HOH A 126 526 534 HOH HOH . E 5 HOH A 127 527 535 HOH HOH . E 5 HOH A 128 528 536 HOH HOH . E 5 HOH A 129 529 537 HOH HOH . E 5 HOH A 130 530 538 HOH HOH . E 5 HOH A 131 531 542 HOH HOH . E 5 HOH A 132 532 544 HOH HOH . E 5 HOH A 133 533 545 HOH HOH . E 5 HOH A 134 534 546 HOH HOH . E 5 HOH A 135 535 548 HOH HOH . E 5 HOH A 136 536 551 HOH HOH . E 5 HOH A 137 537 552 HOH HOH . E 5 HOH A 138 538 553 HOH HOH . E 5 HOH A 139 539 554 HOH HOH . E 5 HOH A 140 540 556 HOH HOH . E 5 HOH A 141 541 557 HOH HOH . E 5 HOH A 142 542 558 HOH HOH . E 5 HOH A 143 543 561 HOH HOH . E 5 HOH A 144 544 563 HOH HOH . E 5 HOH A 145 545 565 HOH HOH . E 5 HOH A 146 546 566 HOH HOH . E 5 HOH A 147 547 567 HOH HOH . E 5 HOH A 148 548 568 HOH HOH . E 5 HOH A 149 549 569 HOH HOH . E 5 HOH A 150 550 570 HOH HOH . E 5 HOH A 151 551 571 HOH HOH . E 5 HOH A 152 552 573 HOH HOH . E 5 HOH A 153 553 574 HOH HOH . E 5 HOH A 154 554 575 HOH HOH . E 5 HOH A 155 555 576 HOH HOH . E 5 HOH A 156 556 586 HOH HOH . E 5 HOH A 157 557 591 HOH HOH . E 5 HOH A 158 558 592 HOH HOH . E 5 HOH A 159 559 594 HOH HOH . E 5 HOH A 160 560 596 HOH HOH . E 5 HOH A 161 561 597 HOH HOH . E 5 HOH A 162 562 598 HOH HOH . E 5 HOH A 163 563 600 HOH HOH . E 5 HOH A 164 564 601 HOH HOH . E 5 HOH A 165 565 603 HOH HOH . E 5 HOH A 166 566 605 HOH HOH . E 5 HOH A 167 567 606 HOH HOH . E 5 HOH A 168 568 609 HOH HOH . E 5 HOH A 169 569 610 HOH HOH . E 5 HOH A 170 570 611 HOH HOH . E 5 HOH A 171 571 614 HOH HOH . E 5 HOH A 172 572 615 HOH HOH . E 5 HOH A 173 573 619 HOH HOH . E 5 HOH A 174 574 620 HOH HOH . E 5 HOH A 175 575 621 HOH HOH . E 5 HOH A 176 576 705 HOH HOH . E 5 HOH A 177 577 706 HOH HOH . E 5 HOH A 178 578 707 HOH HOH . E 5 HOH A 179 579 708 HOH HOH . E 5 HOH A 180 580 703 HOH HOH . E 5 HOH A 181 581 704 HOH HOH . E 5 HOH A 182 582 706 HOH HOH . E 5 HOH A 183 583 707 HOH HOH . E 5 HOH A 184 584 708 HOH HOH . E 5 HOH A 185 585 709 HOH HOH . E 5 HOH A 186 586 710 HOH HOH . E 5 HOH A 187 587 711 HOH HOH . E 5 HOH A 188 588 712 HOH HOH . E 5 HOH A 189 589 713 HOH HOH . E 5 HOH A 190 590 714 HOH HOH . E 5 HOH A 191 591 715 HOH HOH . E 5 HOH A 192 592 716 HOH HOH . E 5 HOH A 193 593 717 HOH HOH . E 5 HOH A 194 594 718 HOH HOH . E 5 HOH A 195 595 719 HOH HOH . E 5 HOH A 196 596 720 HOH HOH . E 5 HOH A 197 597 721 HOH HOH . E 5 HOH A 198 598 722 HOH HOH . E 5 HOH A 199 599 723 HOH HOH . E 5 HOH A 200 600 724 HOH HOH . E 5 HOH A 201 601 725 HOH HOH . E 5 HOH A 202 602 726 HOH HOH . E 5 HOH A 203 603 727 HOH HOH . E 5 HOH A 204 604 728 HOH HOH . E 5 HOH A 205 605 729 HOH HOH . E 5 HOH A 206 606 730 HOH HOH . E 5 HOH A 207 607 731 HOH HOH . E 5 HOH A 208 608 732 HOH HOH . E 5 HOH A 209 609 733 HOH HOH . E 5 HOH A 210 610 734 HOH HOH . E 5 HOH A 211 611 735 HOH HOH . E 5 HOH A 212 612 736 HOH HOH . E 5 HOH A 213 613 737 HOH HOH . E 5 HOH A 214 614 738 HOH HOH . E 5 HOH A 215 615 739 HOH HOH . E 5 HOH A 216 616 740 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 A2P . . . D 4 9.135 -4.63 12.212 1 26.01 ? P1 A2P 316 A 1 HETATM 2 O O1P A2P . . . D 4 8.085 -3.817 11.407 1 28.79 ? O1P A2P 316 A 1 HETATM 3 O O2P A2P . . . D 4 10.349 -5.131 11.413 1 27.12 ? O2P A2P 316 A 1 HETATM 4 O O3P A2P . . . D 4 8.571 -5.826 13.052 1 23.36 ? O3P A2P 316 A 1 HETATM 5 P P2 A2P . A . D 4 15.978 -4.374 13.017 0.55 18.21 ? P2 A2P 316 A 1 HETATM 6 P P2 A2P . B . D 4 15.013 -3.487 11.303 0.45 18.15 ? P2 A2P 316 A 1 HETATM 7 O O4P A2P . A . D 4 16.927 -3.692 12.175 0.55 100 ? O4P A2P 316 A 1 HETATM 8 O O4P A2P . B . D 4 14.93 -4.987 11.307 0.45 100 ? O4P A2P 316 A 1 HETATM 9 O O5P A2P . A . D 4 16.718 -5.405 13.874 0.55 27.93 ? O5P A2P 316 A 1 HETATM 10 O O5P A2P . B . D 4 15.074 -2.897 9.929 0.45 36.54 ? O5P A2P 316 A 1 HETATM 11 O O6P A2P . A . D 4 14.974 -5.022 12.17 0.55 18.29 ? O6P A2P 316 A 1 HETATM 12 O O6P A2P . B . D 4 16.138 -3.062 12.006 0.45 7.27 ? O6P A2P 316 A 1 HETATM 13 O O5' A2P . A . D 4 15.19 -3.324 13.997 0.55 17 ? O5' A2P 316 A 1 HETATM 14 O O5' A2P . B . D 4 13.812 -2.883 12.145 0.45 18.09 ? O5' A2P 316 A 1 HETATM 15 C C5' A2P . . . D 4 14.218 -2.3 13.421 1 10.08 ? C5' A2P 316 A 1 HETATM 16 C C4' A2P . . . D 4 13.051 -2.246 14.373 1 23.16 ? C4' A2P 316 A 1 HETATM 17 O O4' A2P . . . D 4 12.294 -1.063 13.929 1 19.23 ? O4' A2P 316 A 1 HETATM 18 C C3' A2P . . . D 4 12.061 -3.407 14.313 1 19.22 ? C3' A2P 316 A 1 HETATM 19 O O3' A2P . . . D 4 11.433 -3.758 15.511 1 18.25 ? O3' A2P 316 A 1 HETATM 20 C C2' A2P . . . D 4 11.119 -2.877 13.198 1 25.47 ? C2' A2P 316 A 1 HETATM 21 O O2' A2P . . . D 4 9.831 -3.463 13.288 1 29.96 ? O2' A2P 316 A 1 HETATM 22 C C1' A2P . . . D 4 10.922 -1.51 13.772 1 36.62 ? C1' A2P 316 A 1 HETATM 23 N N9 A2P . . . D 4 10.284 -0.593 12.801 1 24.91 ? N9 A2P 316 A 1 HETATM 24 C C8 A2P . . . D 4 10.236 -0.723 11.417 1 34.26 ? C8 A2P 316 A 1 HETATM 25 N N7 A2P . . . D 4 9.631 0.326 10.856 1 37.4 ? N7 A2P 316 A 1 HETATM 26 C C5 A2P . . . D 4 9.309 1.16 11.873 1 36.29 ? C5 A2P 316 A 1 HETATM 27 C C6 A2P . . . D 4 8.611 2.413 11.892 1 29.7 ? C6 A2P 316 A 1 HETATM 28 N N6 A2P . . . D 4 8.177 2.992 10.815 1 40.96 ? N6 A2P 316 A 1 HETATM 29 N N1 A2P . . . D 4 8.425 2.958 13.138 1 33.72 ? N1 A2P 316 A 1 HETATM 30 C C2 A2P . . . D 4 8.884 2.344 14.273 1 21.13 ? C2 A2P 316 A 1 HETATM 31 N N3 A2P . . . D 4 9.555 1.199 14.319 1 25.21 ? N3 A2P 316 A 1 HETATM 32 C C4 A2P . . . D 4 9.721 0.652 13.112 1 30.69 ? C4 A2P 316 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #