data_1FNY # _model_server_result.job_id ahwFML1-iiYepWNao2kIfg _model_server_result.datetime_utc '2025-03-03 18:14:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fny # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1FNY # _exptl.entry_id 1FNY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FNY _cell.length_a 64.078 _cell.length_b 75.854 _cell.length_c 118.084 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FNY _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -x+2,-y,z -1 0 0 0 -1 0 0 0 1 128.156 0 0 3 'crystal symmetry operation' 3_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 128.156 0 118.084 4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 118.084 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 127 A ASP 127 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc2 A OD2 ASP 127 A ASP 127 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc3 A O PHE 129 A PHE 129 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc4 A OD1 ASN 131 A ASN 131 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc5 A OD1 ASP 135 A ASP 135 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc6 C O HOH . A HOH 279 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc7 C O HOH . A HOH 309 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1FNY _atom_sites.fract_transf_matrix[1][1] 0.015606 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013183 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008469 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 500 500 CA CA2 . C 3 HOH A 1 250 250 HOH TIP . C 3 HOH A 2 251 251 HOH TIP . C 3 HOH A 3 252 252 HOH TIP . C 3 HOH A 4 253 253 HOH TIP . C 3 HOH A 5 254 254 HOH TIP . C 3 HOH A 6 255 255 HOH TIP . C 3 HOH A 7 256 256 HOH TIP . C 3 HOH A 8 257 257 HOH TIP . C 3 HOH A 9 258 258 HOH TIP . C 3 HOH A 10 259 259 HOH TIP . C 3 HOH A 11 260 260 HOH TIP . C 3 HOH A 12 261 261 HOH TIP . C 3 HOH A 13 262 262 HOH TIP . C 3 HOH A 14 263 263 HOH TIP . C 3 HOH A 15 264 264 HOH TIP . C 3 HOH A 16 265 265 HOH TIP . C 3 HOH A 17 266 266 HOH TIP . C 3 HOH A 18 267 267 HOH TIP . C 3 HOH A 19 268 268 HOH TIP . C 3 HOH A 20 269 269 HOH TIP . C 3 HOH A 21 270 270 HOH TIP . C 3 HOH A 22 271 271 HOH TIP . C 3 HOH A 23 272 272 HOH TIP . C 3 HOH A 24 273 273 HOH TIP . C 3 HOH A 25 274 274 HOH TIP . C 3 HOH A 26 275 275 HOH TIP . C 3 HOH A 27 276 276 HOH TIP . C 3 HOH A 28 277 277 HOH TIP . C 3 HOH A 29 278 278 HOH TIP . C 3 HOH A 30 279 279 HOH TIP . C 3 HOH A 31 280 280 HOH TIP . C 3 HOH A 32 281 281 HOH TIP . C 3 HOH A 33 282 282 HOH TIP . C 3 HOH A 34 283 283 HOH TIP . C 3 HOH A 35 284 284 HOH TIP . C 3 HOH A 36 285 285 HOH TIP . C 3 HOH A 37 286 286 HOH TIP . C 3 HOH A 38 287 287 HOH TIP . C 3 HOH A 39 288 288 HOH TIP . C 3 HOH A 40 289 289 HOH TIP . C 3 HOH A 41 290 290 HOH TIP . C 3 HOH A 42 291 291 HOH TIP . C 3 HOH A 43 292 292 HOH TIP . C 3 HOH A 44 293 293 HOH TIP . C 3 HOH A 45 294 294 HOH TIP . C 3 HOH A 46 295 295 HOH TIP . C 3 HOH A 47 296 296 HOH TIP . C 3 HOH A 48 297 297 HOH TIP . C 3 HOH A 49 298 298 HOH TIP . C 3 HOH A 50 299 299 HOH TIP . C 3 HOH A 51 300 300 HOH TIP . C 3 HOH A 52 301 301 HOH TIP . C 3 HOH A 53 302 302 HOH TIP . C 3 HOH A 54 303 303 HOH TIP . C 3 HOH A 55 304 304 HOH TIP . C 3 HOH A 56 305 305 HOH TIP . C 3 HOH A 57 306 306 HOH TIP . C 3 HOH A 58 307 307 HOH TIP . C 3 HOH A 59 308 308 HOH TIP . C 3 HOH A 60 309 309 HOH TIP . C 3 HOH A 61 310 310 HOH TIP . C 3 HOH A 62 311 311 HOH TIP . C 3 HOH A 63 312 312 HOH TIP . C 3 HOH A 64 313 313 HOH TIP . C 3 HOH A 65 314 314 HOH TIP . C 3 HOH A 66 315 315 HOH TIP . C 3 HOH A 67 316 316 HOH TIP . C 3 HOH A 68 317 317 HOH TIP . C 3 HOH A 69 318 318 HOH TIP . C 3 HOH A 70 319 319 HOH TIP . C 3 HOH A 71 320 320 HOH TIP . C 3 HOH A 72 321 321 HOH TIP . C 3 HOH A 73 322 322 HOH TIP . C 3 HOH A 74 323 323 HOH TIP . C 3 HOH A 75 324 324 HOH TIP . C 3 HOH A 76 325 325 HOH TIP . C 3 HOH A 77 326 326 HOH TIP . C 3 HOH A 78 327 327 HOH TIP . C 3 HOH A 79 328 328 HOH TIP . C 3 HOH A 80 329 329 HOH TIP . C 3 HOH A 81 330 330 HOH TIP . C 3 HOH A 82 331 331 HOH TIP . C 3 HOH A 83 332 332 HOH TIP . C 3 HOH A 84 333 333 HOH TIP . C 3 HOH A 85 334 334 HOH TIP . C 3 HOH A 86 335 335 HOH TIP . C 3 HOH A 87 336 336 HOH TIP . C 3 HOH A 88 337 337 HOH TIP . C 3 HOH A 89 338 338 HOH TIP . C 3 HOH A 90 339 339 HOH TIP . C 3 HOH A 91 340 340 HOH TIP . C 3 HOH A 92 341 341 HOH TIP . C 3 HOH A 93 342 342 HOH TIP . C 3 HOH A 94 343 343 HOH TIP . C 3 HOH A 95 344 344 HOH TIP . C 3 HOH A 96 345 345 HOH TIP . C 3 HOH A 97 346 346 HOH TIP . C 3 HOH A 98 347 347 HOH TIP . C 3 HOH A 99 348 348 HOH TIP . C 3 HOH A 100 349 349 HOH TIP . C 3 HOH A 101 350 350 HOH TIP . C 3 HOH A 102 351 351 HOH TIP . C 3 HOH A 103 352 352 HOH TIP . C 3 HOH A 104 353 353 HOH TIP . C 3 HOH A 105 354 354 HOH TIP . C 3 HOH A 106 355 355 HOH TIP . C 3 HOH A 107 356 356 HOH TIP . C 3 HOH A 108 357 357 HOH TIP . C 3 HOH A 109 358 358 HOH TIP . C 3 HOH A 110 359 359 HOH TIP . C 3 HOH A 111 360 360 HOH TIP . C 3 HOH A 112 361 361 HOH TIP . C 3 HOH A 113 362 362 HOH TIP . C 3 HOH A 114 363 363 HOH TIP . C 3 HOH A 115 364 364 HOH TIP . C 3 HOH A 116 365 365 HOH TIP . C 3 HOH A 117 366 366 HOH TIP . C 3 HOH A 118 367 367 HOH TIP . C 3 HOH A 119 368 368 HOH TIP . C 3 HOH A 120 369 369 HOH TIP . C 3 HOH A 121 370 370 HOH TIP . C 3 HOH A 122 371 371 HOH TIP . C 3 HOH A 123 372 372 HOH TIP . C 3 HOH A 124 373 373 HOH TIP . C 3 HOH A 125 374 374 HOH TIP . C 3 HOH A 126 375 375 HOH TIP . C 3 HOH A 127 376 376 HOH TIP . C 3 HOH A 128 377 377 HOH TIP . C 3 HOH A 129 378 378 HOH TIP . C 3 HOH A 130 379 379 HOH TIP . C 3 HOH A 131 380 380 HOH TIP . C 3 HOH A 132 381 381 HOH TIP . C 3 HOH A 133 382 382 HOH TIP . C 3 HOH A 134 383 383 HOH TIP . C 3 HOH A 135 384 384 HOH TIP . C 3 HOH A 136 385 385 HOH TIP . C 3 HOH A 137 386 386 HOH TIP . C 3 HOH A 138 387 387 HOH TIP . C 3 HOH A 139 388 388 HOH TIP . C 3 HOH A 140 389 389 HOH TIP . C 3 HOH A 141 390 390 HOH TIP . C 3 HOH A 142 391 391 HOH TIP . C 3 HOH A 143 392 392 HOH TIP . C 3 HOH A 144 393 393 HOH TIP . C 3 HOH A 145 394 394 HOH TIP . C 3 HOH A 146 395 395 HOH TIP . C 3 HOH A 147 396 396 HOH TIP . C 3 HOH A 148 397 397 HOH TIP . C 3 HOH A 149 398 398 HOH TIP . C 3 HOH A 150 399 399 HOH TIP . C 3 HOH A 151 400 400 HOH TIP . C 3 HOH A 152 401 401 HOH TIP . C 3 HOH A 153 402 402 HOH TIP . C 3 HOH A 154 403 403 HOH TIP . C 3 HOH A 155 404 404 HOH TIP . C 3 HOH A 156 405 405 HOH TIP . C 3 HOH A 157 406 406 HOH TIP . C 3 HOH A 158 407 407 HOH TIP . C 3 HOH A 159 408 408 HOH TIP . C 3 HOH A 160 409 409 HOH TIP . C 3 HOH A 161 410 410 HOH TIP . C 3 HOH A 162 411 411 HOH TIP . C 3 HOH A 163 412 412 HOH TIP . C 3 HOH A 164 413 413 HOH TIP . C 3 HOH A 165 414 414 HOH TIP . C 3 HOH A 166 415 415 HOH TIP . C 3 HOH A 167 416 416 HOH TIP . C 3 HOH A 168 417 417 HOH TIP . C 3 HOH A 169 418 418 HOH TIP . C 3 HOH A 170 419 419 HOH TIP . C 3 HOH A 171 420 420 HOH TIP . C 3 HOH A 172 421 421 HOH TIP . C 3 HOH A 173 422 422 HOH TIP . C 3 HOH A 174 423 423 HOH TIP . C 3 HOH A 175 424 424 HOH TIP . C 3 HOH A 176 425 425 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 63.488 _atom_site.Cartn_y -19.96 _atom_site.Cartn_z 28.436 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 500 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #