data_1FP1 # _model_server_result.job_id aH2nekcecZZnivhAo32Kkg _model_server_result.datetime_utc '2024-10-18 17:26:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fp1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1699}' # _entry.id 1FP1 # _exptl.entry_id 1FP1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.92 _cell.angle_gamma 90 _cell.entry_id 1FP1 _cell.length_a 125.119 _cell.length_b 53.793 _cell.length_c 73.39 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_657 -x+1,y,-z+2 -1 0 0 0 1 0 0 0 -1 41.097413 0 120.352571 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 309 n n N HN1 SAH sing 310 n n N HN2 SAH sing 311 n n CA CB SAH sing 312 n n CA C SAH sing 313 n n CA HA SAH sing 314 n n CB CG SAH sing 315 n n CB HB1 SAH sing 316 n n CB HB2 SAH sing 317 n n CG SD SAH sing 318 n n CG HG1 SAH sing 319 n n CG HG2 SAH sing 320 n n SD C5' SAH sing 321 n n C O SAH doub 322 n n C OXT SAH sing 323 n n OXT HXT SAH sing 324 n n C5' C4' SAH sing 325 n n C5' "H5'1" SAH sing 326 n n C5' "H5'2" SAH sing 327 n n C4' O4' SAH sing 328 n n C4' C3' SAH sing 329 n n C4' H4' SAH sing 330 n n O4' C1' SAH sing 331 n n C3' O3' SAH sing 332 n n C3' C2' SAH sing 333 n n C3' H3' SAH sing 334 n n O3' HO3' SAH sing 335 n n C2' O2' SAH sing 336 n n C2' C1' SAH sing 337 n n C2' H2' SAH sing 338 n n O2' HO2' SAH sing 339 n n C1' N9 SAH sing 340 n n C1' H1' SAH sing 341 n n N9 C8 SAH sing 342 n y N9 C4 SAH sing 343 n y C8 N7 SAH doub 344 n y C8 H8 SAH sing 345 n n N7 C5 SAH sing 346 n y C5 C6 SAH sing 347 n y C5 C4 SAH doub 348 n y C6 N6 SAH sing 349 n n C6 N1 SAH doub 350 n y N6 HN61 SAH sing 351 n n N6 HN62 SAH sing 352 n n N1 C2 SAH sing 353 n y C2 N3 SAH doub 354 n y C2 H2 SAH sing 355 n n N3 C4 SAH sing 356 n y # _atom_sites.entry_id 1FP1 _atom_sites.fract_transf_matrix[1][1] 0.007992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00558 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH D 1 1699 1699 SAH SAH . C 3 HCC D 1 2000 2000 HCC NAS . D 4 HOH D 1 2001 1 HOH TIP . D 4 HOH D 2 2002 2 HOH TIP . D 4 HOH D 3 2003 3 HOH TIP . D 4 HOH D 4 2004 4 HOH TIP . D 4 HOH D 5 2005 5 HOH TIP . D 4 HOH D 6 2006 6 HOH TIP . D 4 HOH D 7 2007 7 HOH TIP . D 4 HOH D 8 2008 8 HOH TIP . D 4 HOH D 9 2009 9 HOH TIP . D 4 HOH D 10 2010 10 HOH TIP . D 4 HOH D 11 2011 11 HOH TIP . D 4 HOH D 12 2012 12 HOH TIP . D 4 HOH D 13 2013 13 HOH TIP . D 4 HOH D 14 2014 14 HOH TIP . D 4 HOH D 15 2015 15 HOH TIP . D 4 HOH D 16 2016 16 HOH TIP . D 4 HOH D 17 2017 17 HOH TIP . D 4 HOH D 18 2018 18 HOH TIP . D 4 HOH D 19 2019 19 HOH TIP . D 4 HOH D 20 2020 20 HOH TIP . D 4 HOH D 21 2021 22 HOH TIP . D 4 HOH D 22 2022 23 HOH TIP . D 4 HOH D 23 2023 24 HOH TIP . D 4 HOH D 24 2024 25 HOH TIP . D 4 HOH D 25 2025 26 HOH TIP . D 4 HOH D 26 2026 27 HOH TIP . D 4 HOH D 27 2027 28 HOH TIP . D 4 HOH D 28 2028 29 HOH TIP . D 4 HOH D 29 2029 30 HOH TIP . D 4 HOH D 30 2030 31 HOH TIP . D 4 HOH D 31 2031 32 HOH TIP . D 4 HOH D 32 2032 33 HOH TIP . D 4 HOH D 33 2033 34 HOH TIP . D 4 HOH D 34 2034 35 HOH TIP . D 4 HOH D 35 2035 36 HOH TIP . D 4 HOH D 36 2036 37 HOH TIP . D 4 HOH D 37 2037 38 HOH TIP . D 4 HOH D 38 2038 39 HOH TIP . D 4 HOH D 39 2039 40 HOH TIP . D 4 HOH D 40 2040 41 HOH TIP . D 4 HOH D 41 2041 42 HOH TIP . D 4 HOH D 42 2042 43 HOH TIP . D 4 HOH D 43 2043 44 HOH TIP . D 4 HOH D 44 2044 45 HOH TIP . D 4 HOH D 45 2045 46 HOH TIP . D 4 HOH D 46 2046 47 HOH TIP . D 4 HOH D 47 2047 48 HOH TIP . D 4 HOH D 48 2048 49 HOH TIP . D 4 HOH D 49 2049 50 HOH TIP . D 4 HOH D 50 2050 51 HOH TIP . D 4 HOH D 51 2051 52 HOH TIP . D 4 HOH D 52 2052 53 HOH TIP . D 4 HOH D 53 2053 54 HOH TIP . D 4 HOH D 54 2054 55 HOH TIP . D 4 HOH D 55 2055 56 HOH TIP . D 4 HOH D 56 2056 57 HOH TIP . D 4 HOH D 57 2057 58 HOH TIP . D 4 HOH D 58 2058 59 HOH TIP . D 4 HOH D 59 2059 60 HOH TIP . D 4 HOH D 60 2060 61 HOH TIP . D 4 HOH D 61 2061 62 HOH TIP . D 4 HOH D 62 2062 63 HOH TIP . D 4 HOH D 63 2063 64 HOH TIP . D 4 HOH D 64 2064 65 HOH TIP . D 4 HOH D 65 2065 66 HOH TIP . D 4 HOH D 66 2066 67 HOH TIP . D 4 HOH D 67 2067 68 HOH TIP . D 4 HOH D 68 2068 69 HOH TIP . D 4 HOH D 69 2069 70 HOH TIP . D 4 HOH D 70 2070 71 HOH TIP . D 4 HOH D 71 2071 72 HOH TIP . D 4 HOH D 72 2072 73 HOH TIP . D 4 HOH D 73 2073 74 HOH TIP . D 4 HOH D 74 2074 75 HOH TIP . D 4 HOH D 75 2075 76 HOH TIP . D 4 HOH D 76 2076 77 HOH TIP . D 4 HOH D 77 2077 78 HOH TIP . D 4 HOH D 78 2078 79 HOH TIP . D 4 HOH D 79 2079 80 HOH TIP . D 4 HOH D 80 2080 81 HOH TIP . D 4 HOH D 81 2081 82 HOH TIP . D 4 HOH D 82 2082 83 HOH TIP . D 4 HOH D 83 2083 84 HOH TIP . D 4 HOH D 84 2084 85 HOH TIP . D 4 HOH D 85 2085 86 HOH TIP . D 4 HOH D 86 2086 87 HOH TIP . D 4 HOH D 87 2087 88 HOH TIP . D 4 HOH D 88 2088 89 HOH TIP . D 4 HOH D 89 2089 90 HOH TIP . D 4 HOH D 90 2090 91 HOH TIP . D 4 HOH D 91 2091 92 HOH TIP . D 4 HOH D 92 2092 93 HOH TIP . D 4 HOH D 93 2093 94 HOH TIP . D 4 HOH D 94 2094 95 HOH TIP . D 4 HOH D 95 2095 96 HOH TIP . D 4 HOH D 96 2096 97 HOH TIP . D 4 HOH D 97 2097 98 HOH TIP . D 4 HOH D 98 2098 99 HOH TIP . D 4 HOH D 99 2099 100 HOH TIP . D 4 HOH D 100 2100 101 HOH TIP . D 4 HOH D 101 2101 102 HOH TIP . D 4 HOH D 102 2102 103 HOH TIP . D 4 HOH D 103 2103 104 HOH TIP . D 4 HOH D 104 2104 105 HOH TIP . D 4 HOH D 105 2105 106 HOH TIP . D 4 HOH D 106 2106 107 HOH TIP . D 4 HOH D 107 2107 108 HOH TIP . D 4 HOH D 108 2108 109 HOH TIP . D 4 HOH D 109 2109 110 HOH TIP . D 4 HOH D 110 2110 111 HOH TIP . D 4 HOH D 111 2111 112 HOH TIP . D 4 HOH D 112 2112 113 HOH TIP . D 4 HOH D 113 2113 1 HOH WAT . D 4 HOH D 114 2114 2 HOH WAT . D 4 HOH D 115 2115 3 HOH WAT . D 4 HOH D 116 2116 4 HOH WAT . D 4 HOH D 117 2117 5 HOH WAT . D 4 HOH D 118 2118 7 HOH WAT . D 4 HOH D 119 2119 8 HOH WAT . D 4 HOH D 120 2120 9 HOH WAT . D 4 HOH D 121 2121 10 HOH WAT . D 4 HOH D 122 2122 11 HOH WAT . D 4 HOH D 123 2123 12 HOH WAT . D 4 HOH D 124 2124 13 HOH WAT . D 4 HOH D 125 2125 14 HOH WAT . D 4 HOH D 126 2126 15 HOH WAT . D 4 HOH D 127 2127 16 HOH WAT . D 4 HOH D 128 2128 17 HOH WAT . D 4 HOH D 129 2129 18 HOH WAT . D 4 HOH D 130 2130 19 HOH WAT . D 4 HOH D 131 2131 20 HOH WAT . D 4 HOH D 132 2132 21 HOH WAT . D 4 HOH D 133 2133 22 HOH WAT . D 4 HOH D 134 2134 23 HOH WAT . D 4 HOH D 135 2135 24 HOH WAT . D 4 HOH D 136 2136 25 HOH WAT . D 4 HOH D 137 2137 26 HOH WAT . D 4 HOH D 138 2138 27 HOH WAT . D 4 HOH D 139 2139 28 HOH WAT . D 4 HOH D 140 2140 29 HOH WAT . D 4 HOH D 141 2141 30 HOH WAT . D 4 HOH D 142 2142 31 HOH WAT . D 4 HOH D 143 2143 32 HOH WAT . D 4 HOH D 144 2144 33 HOH WAT . D 4 HOH D 145 2145 34 HOH WAT . D 4 HOH D 146 2146 35 HOH WAT . D 4 HOH D 147 2147 36 HOH WAT . D 4 HOH D 148 2148 37 HOH WAT . D 4 HOH D 149 2149 38 HOH WAT . D 4 HOH D 150 2150 39 HOH WAT . D 4 HOH D 151 2151 40 HOH WAT . D 4 HOH D 152 2152 41 HOH WAT . D 4 HOH D 153 2153 42 HOH WAT . D 4 HOH D 154 2154 43 HOH WAT . D 4 HOH D 155 2155 44 HOH WAT . D 4 HOH D 156 2156 45 HOH WAT . D 4 HOH D 157 2157 46 HOH WAT . D 4 HOH D 158 2158 47 HOH WAT . D 4 HOH D 159 2159 48 HOH WAT . D 4 HOH D 160 2160 49 HOH WAT . D 4 HOH D 161 2161 50 HOH WAT . D 4 HOH D 162 2162 51 HOH WAT . D 4 HOH D 163 2163 52 HOH WAT . D 4 HOH D 164 2164 53 HOH WAT . D 4 HOH D 165 2165 54 HOH WAT . D 4 HOH D 166 2166 55 HOH WAT . D 4 HOH D 167 2167 56 HOH WAT . D 4 HOH D 168 2168 57 HOH WAT . D 4 HOH D 169 2169 58 HOH WAT . D 4 HOH D 170 2170 59 HOH WAT . D 4 HOH D 171 2171 60 HOH WAT . D 4 HOH D 172 2172 61 HOH WAT . D 4 HOH D 173 2173 62 HOH WAT . D 4 HOH D 174 2174 63 HOH WAT . D 4 HOH D 175 2175 64 HOH WAT . D 4 HOH D 176 2176 65 HOH WAT . D 4 HOH D 177 2177 66 HOH WAT . D 4 HOH D 178 2178 67 HOH WAT . D 4 HOH D 179 2179 68 HOH WAT . D 4 HOH D 180 2180 69 HOH WAT . D 4 HOH D 181 2181 70 HOH WAT . D 4 HOH D 182 2182 71 HOH WAT . D 4 HOH D 183 2183 72 HOH WAT . D 4 HOH D 184 2184 73 HOH WAT . D 4 HOH D 185 2185 74 HOH WAT . D 4 HOH D 186 2186 75 HOH WAT . D 4 HOH D 187 2187 76 HOH WAT . D 4 HOH D 188 2188 77 HOH WAT . D 4 HOH D 189 2189 78 HOH WAT . D 4 HOH D 190 2190 79 HOH WAT . D 4 HOH D 191 2191 80 HOH WAT . D 4 HOH D 192 2192 81 HOH WAT . D 4 HOH D 193 2193 82 HOH WAT . D 4 HOH D 194 2194 83 HOH WAT . D 4 HOH D 195 2195 84 HOH WAT . D 4 HOH D 196 2196 85 HOH WAT . D 4 HOH D 197 2197 86 HOH WAT . D 4 HOH D 198 2198 87 HOH WAT . D 4 HOH D 199 2199 88 HOH WAT . D 4 HOH D 200 2200 89 HOH WAT . D 4 HOH D 201 2201 90 HOH WAT . D 4 HOH D 202 2202 91 HOH WAT . D 4 HOH D 203 2203 92 HOH WAT . D 4 HOH D 204 2204 93 HOH WAT . D 4 HOH D 205 2205 94 HOH WAT . D 4 HOH D 206 2206 95 HOH WAT . D 4 HOH D 207 2207 96 HOH WAT . D 4 HOH D 208 2208 97 HOH WAT . D 4 HOH D 209 2209 98 HOH WAT . D 4 HOH D 210 2210 99 HOH WAT . D 4 HOH D 211 2211 100 HOH WAT . D 4 HOH D 212 2212 101 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 -5.182 -13.138 49.176 1 32.12 ? N SAH 1699 D 1 HETATM 2 C CA SAH . . . B 2 -4.392 -14.027 50.111 1 36.18 ? CA SAH 1699 D 1 HETATM 3 C CB SAH . . . B 2 -3.353 -14.679 49.324 1 37.48 ? CB SAH 1699 D 1 HETATM 4 C CG SAH . . . B 2 -2.296 -15.649 49.76 1 38.87 ? CG SAH 1699 D 1 HETATM 5 S SD SAH . . . B 2 -1.508 -16.532 48.419 1 34.98 ? SD SAH 1699 D 1 HETATM 6 C C SAH . . . B 2 -3.722 -13.124 51.209 1 35.76 ? C SAH 1699 D 1 HETATM 7 O O SAH . . . B 2 -3.424 -13.693 52.308 1 37.79 ? O SAH 1699 D 1 HETATM 8 O OXT SAH . . . B 2 -3.494 -11.922 50.923 1 33.64 ? OXT SAH 1699 D 1 HETATM 9 C C5' SAH . . . B 2 -2.906 -16.728 47.16 1 39.9 ? C5' SAH 1699 D 1 HETATM 10 C C4' SAH . . . B 2 -3.124 -17.51 46.944 1 36.25 ? C4' SAH 1699 D 1 HETATM 11 O O4' SAH . . . B 2 -3.395 -17.668 45.5 1 38.34 ? O4' SAH 1699 D 1 HETATM 12 C C3' SAH . . . B 2 -3.396 -18.872 47.633 1 36.45 ? C3' SAH 1699 D 1 HETATM 13 O O3' SAH . . . B 2 -4.607 -18.741 48.427 1 31.22 ? O3' SAH 1699 D 1 HETATM 14 C C2' SAH . . . B 2 -3.658 -19.756 46.445 1 35.33 ? C2' SAH 1699 D 1 HETATM 15 O O2' SAH . . . B 2 -4.766 -20.613 46.692 1 38.68 ? O2' SAH 1699 D 1 HETATM 16 C C1' SAH . . . B 2 -3.767 -19.01 45.16 1 36.83 ? C1' SAH 1699 D 1 HETATM 17 N N9 SAH . . . B 2 -4.049 -19.537 43.877 1 34.49 ? N9 SAH 1699 D 1 HETATM 18 C C8 SAH . . . B 2 -3.035 -20.198 43.22 1 35.63 ? C8 SAH 1699 D 1 HETATM 19 N N7 SAH . . . B 2 -3.403 -20.618 42.084 1 36.23 ? N7 SAH 1699 D 1 HETATM 20 C C5 SAH . . . B 2 -4.711 -20.231 41.959 1 34.1 ? C5 SAH 1699 D 1 HETATM 21 C C6 SAH . . . B 2 -5.687 -20.429 40.845 1 33.5 ? C6 SAH 1699 D 1 HETATM 22 N N6 SAH . . . B 2 -5.324 -21.072 39.751 1 33.24 ? N6 SAH 1699 D 1 HETATM 23 N N1 SAH . . . B 2 -6.94 -19.893 41.067 1 32.26 ? N1 SAH 1699 D 1 HETATM 24 C C2 SAH . . . B 2 -7.33 -19.209 42.222 1 35.18 ? C2 SAH 1699 D 1 HETATM 25 N N3 SAH . . . B 2 -6.448 -19.015 43.26 1 32.61 ? N3 SAH 1699 D 1 HETATM 26 C C4 SAH . . . B 2 -5.176 -19.544 43.065 1 33.61 ? C4 SAH 1699 D 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 26 #