data_1FPB
#
_model_server_result.job_id            7gClm0tkirHSkcxY52WYNw 
_model_server_result.datetime_utc      '2025-04-26 10:10:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1fpb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":337}' 
#
_entry.id    1FPB 
#
_exptl.entry_id    1FPB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              340.116 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2,6-di-O-phosphono-beta-D-fructofuranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1FPB 
_cell.length_a            131.4 
_cell.length_b            131.4 
_cell.length_c            68.6 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1FPB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C6 H14 O12 P2' 
_chem_comp.formula_weight    340.116 
_chem_comp.id                FDP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              2,6-di-O-phosphono-beta-D-fructofuranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     FRUCTOSE-2,6-DIPHOSPHATE;2,6-di-O-phosphono-beta-D-fructose;2,6-di-O-phosphono-D-fructose;2,6-di-O-phosphono-fructose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O1P FDP doub 83 n n 
P1 O2P FDP sing 84 n n 
P1 O3P FDP sing 85 n n 
P1 O2 FDP sing 86 n n 
O2P HOP2 FDP sing 87 n n 
O3P HOP3 FDP sing 88 n n 
O1 C1 FDP sing 89 n n 
O1 HO1 FDP sing 90 n n 
C1 C2 FDP sing 91 n n 
C1 H11 FDP sing 92 n n 
C1 H12 FDP sing 93 n n 
C2 O2 FDP sing 94 n n 
C2 C3 FDP sing 95 n n 
C2 O5 FDP sing 96 n n 
C3 O3 FDP sing 97 n n 
C3 C4 FDP sing 98 n n 
C3 H3 FDP sing 99 n n 
O3 HO3 FDP sing 100 n n 
C4 O4 FDP sing 101 n n 
C4 C5 FDP sing 102 n n 
C4 H4 FDP sing 103 n n 
O4 HO4 FDP sing 104 n n 
C5 O5 FDP sing 105 n n 
C5 C6 FDP sing 106 n n 
C5 H5 FDP sing 107 n n 
C6 O6 FDP sing 108 n n 
C6 H61 FDP sing 109 n n 
C6 H62 FDP sing 110 n n 
O6 P2 FDP sing 111 n n 
P2 O4P FDP doub 112 n n 
P2 O5P FDP sing 113 n n 
P2 O6P FDP sing 114 n n 
O5P HOP5 FDP sing 115 n n 
O6P HOP6 FDP sing 116 n n 
#
_pdbx_chem_comp_identifier.comp_id            FDP 
_pdbx_chem_comp_identifier.identifier         b-D-Fruf2PO36PO3 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     1FPB 
_atom_sites.fract_transf_matrix[1][1]    0.00761 
_atom_sites.fract_transf_matrix[1][2]    0.004394 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008788 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014577 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FDP A 1 336 336 FDP FDP . 
D 2 FDP A 1 337 337 FDP FDP . 
E 2 FDP B 1 336 336 FDP FDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 FDP . . . D 2 48.56 106.622 4.173 0.1 66.02 ? P1 FDP 337 A 1 
HETATM 2 O O1P FDP . . . D 2 47.497 105.584 3.866 0.1 66.64 ? O1P FDP 337 A 1 
HETATM 3 O O2P FDP . . . D 2 48.326 107.86 3.319 0.1 67.22 ? O2P FDP 337 A 1 
HETATM 4 O O3P FDP . . . D 2 49.929 106.027 3.874 0.1 66.21 ? O3P FDP 337 A 1 
HETATM 5 O O1 FDP . . . D 2 46.246 108.638 7.034 0.48 70.72 ? O1 FDP 337 A 1 
HETATM 6 C C1 FDP . . . D 2 47.227 109.097 6.073 0.48 64.96 ? C1 FDP 337 A 1 
HETATM 7 C C2 FDP . . . D 2 48.59 108.405 6.174 0.48 63.18 ? C2 FDP 337 A 1 
HETATM 8 O O2 FDP . . . D 2 48.475 107.028 5.721 0.48 64.5 ? O2 FDP 337 A 1 
HETATM 9 C C3 FDP . . . D 2 49.087 108.43 7.63 0.48 64.07 ? C3 FDP 337 A 1 
HETATM 10 O O3 FDP . . . D 2 48.428 107.431 8.394 0.48 65.05 ? O3 FDP 337 A 1 
HETATM 11 C C4 FDP . . . D 2 50.611 108.261 7.465 0.48 63.35 ? C4 FDP 337 A 1 
HETATM 12 O O4 FDP . . . D 2 51.368 108.712 8.576 0.48 62.41 ? O4 FDP 337 A 1 
HETATM 13 C C5 FDP . . . D 2 50.908 108.997 6.137 0.48 63.57 ? C5 FDP 337 A 1 
HETATM 14 O O5 FDP . . . D 2 49.637 109.088 5.441 0.48 61.75 ? O5 FDP 337 A 1 
HETATM 15 C C6 FDP . . . D 2 51.94 108.249 5.332 0.48 63.88 ? C6 FDP 337 A 1 
HETATM 16 O O6 FDP . . . D 2 53.227 108.318 6.017 0.99 62.89 ? O6 FDP 337 A 1 
HETATM 17 P P2 FDP . . . D 2 54.552 107.638 5.421 0.99 56.55 ? P2 FDP 337 A 1 
HETATM 18 O O4P FDP . . . D 2 54.341 107.318 3.942 0.99 53.39 ? O4P FDP 337 A 1 
HETATM 19 O O5P FDP . . . D 2 55.675 108.66 5.579 0.99 61.11 ? O5P FDP 337 A 1 
HETATM 20 O O6P FDP . . . D 2 54.945 106.384 6.197 0.99 53.45 ? O6P FDP 337 A 1 
HETATM 21 H HO3 FDP . . . D 2 48.857 107.34 9.246 1 0 ? HO3 FDP 337 A 1 
HETATM 22 H HO4 FDP . . . D 2 51.156 108.185 9.35 1 0 ? HO4 FDP 337 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           772 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           22 
#