data_1FPD # _model_server_result.job_id LkEQBjsJWj7i7LT58Nm-Zw _model_server_result.datetime_utc '2024-12-01 21:03:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fpd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":339}' # _entry.id 1FPD # _exptl.entry_id 1FPD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FPD _cell.length_a 61.1 _cell.length_b 166.4 _cell.length_c 79.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FPD _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 61.1 166.4 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 97 A GLU 97 1_555 C MN MN . A MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc2 A OE1 GLU 97 A GLU 97 1_555 D MN MN . A MN 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc3 A OD2 ASP 118 A ASP 118 1_555 C MN MN . A MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc4 A OD1 ASP 118 A ASP 118 1_555 D MN MN . A MN 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc5 A O LEU 120 A LEU 120 1_555 D MN MN . A MN 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc6 A OD1 ASP 121 A ASP 121 1_555 C MN MN . A MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc7 A OE2 GLU 280 A GLU 280 1_555 C MN MN . A MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc8 C MN MN . A MN 336 1_555 E O1P AHG . A AHG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc9 B OE2 GLU 97 B GLU 97 1_555 G MN MN . B MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc10 B OD2 ASP 118 B ASP 118 1_555 G MN MN . B MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc11 B OD1 ASP 118 B ASP 118 1_555 H MN MN . B MN 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc12 B O LEU 120 B LEU 120 1_555 H MN MN . B MN 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc13 B OD1 ASP 121 B ASP 121 1_555 G MN MN . B MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc14 B OE2 GLU 280 B GLU 280 1_555 G MN MN . B MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc15 G MN MN . B MN 336 1_555 I O1P AHG . B AHG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 46 n n P O2P AMP sing 47 n n P O3P AMP sing 48 n n P O5' AMP sing 49 n n O2P HOP2 AMP sing 50 n n O3P HOP3 AMP sing 51 n n O5' C5' AMP sing 52 n n C5' C4' AMP sing 53 n n C5' "H5'1" AMP sing 54 n n C5' "H5'2" AMP sing 55 n n C4' O4' AMP sing 56 n n C4' C3' AMP sing 57 n n C4' H4' AMP sing 58 n n O4' C1' AMP sing 59 n n C3' O3' AMP sing 60 n n C3' C2' AMP sing 61 n n C3' H3' AMP sing 62 n n O3' HO3' AMP sing 63 n n C2' O2' AMP sing 64 n n C2' C1' AMP sing 65 n n C2' H2' AMP sing 66 n n O2' HO2' AMP sing 67 n n C1' N9 AMP sing 68 n n C1' H1' AMP sing 69 n n N9 C8 AMP sing 70 n y N9 C4 AMP sing 71 n y C8 N7 AMP doub 72 n y C8 H8 AMP sing 73 n n N7 C5 AMP sing 74 n y C5 C6 AMP sing 75 n y C5 C4 AMP doub 76 n y C6 N6 AMP sing 77 n n C6 N1 AMP doub 78 n y N6 HN61 AMP sing 79 n n N6 HN62 AMP sing 80 n n N1 C2 AMP sing 81 n y C2 N3 AMP doub 82 n y C2 H2 AMP sing 83 n n N3 C4 AMP sing 84 n y # _atom_sites.entry_id 1FPD _atom_sites.fract_transf_matrix[1][1] 0.016367 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00601 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 336 1 MN MN . D 2 MN A 1 337 2 MN MN . E 3 AHG A 1 338 3 AHG AHG . F 4 AMP A 1 339 4 AMP AMP . G 2 MN B 1 336 1 MN MN . H 2 MN B 1 337 2 MN MN . I 3 AHG B 1 338 3 AHG AHG . J 4 AMP B 1 339 4 AMP AMP . K 5 HOH A 1 340 12 HOH HOH . K 5 HOH A 2 341 13 HOH HOH . K 5 HOH A 3 342 14 HOH HOH . K 5 HOH A 4 343 15 HOH HOH . K 5 HOH A 5 344 16 HOH HOH . K 5 HOH A 6 345 18 HOH HOH . K 5 HOH A 7 346 23 HOH HOH . K 5 HOH A 8 347 25 HOH HOH . K 5 HOH A 9 348 26 HOH HOH . K 5 HOH A 10 349 27 HOH HOH . K 5 HOH A 11 350 29 HOH HOH . K 5 HOH A 12 351 30 HOH HOH . K 5 HOH A 13 352 33 HOH HOH . K 5 HOH A 14 353 37 HOH HOH . K 5 HOH A 15 354 40 HOH HOH . K 5 HOH A 16 355 43 HOH HOH . K 5 HOH A 17 356 45 HOH HOH . K 5 HOH A 18 357 48 HOH HOH . K 5 HOH A 19 358 51 HOH HOH . K 5 HOH A 20 359 54 HOH HOH . K 5 HOH A 21 360 55 HOH HOH . K 5 HOH A 22 361 56 HOH HOH . K 5 HOH A 23 362 57 HOH HOH . K 5 HOH A 24 363 59 HOH HOH . K 5 HOH A 25 364 62 HOH HOH . K 5 HOH A 26 365 63 HOH HOH . K 5 HOH A 27 366 64 HOH HOH . K 5 HOH A 28 367 65 HOH HOH . K 5 HOH A 29 368 66 HOH HOH . K 5 HOH A 30 369 67 HOH HOH . K 5 HOH A 31 370 68 HOH HOH . K 5 HOH A 32 371 69 HOH HOH . K 5 HOH A 33 372 73 HOH HOH . K 5 HOH A 34 373 74 HOH HOH . K 5 HOH A 35 374 76 HOH HOH . K 5 HOH A 36 375 77 HOH HOH . K 5 HOH A 37 376 78 HOH HOH . K 5 HOH A 38 377 79 HOH HOH . K 5 HOH A 39 378 80 HOH HOH . K 5 HOH A 40 379 81 HOH HOH . K 5 HOH A 41 380 82 HOH HOH . K 5 HOH A 42 381 85 HOH HOH . K 5 HOH A 43 382 88 HOH HOH . K 5 HOH A 44 383 89 HOH HOH . K 5 HOH A 45 384 92 HOH HOH . K 5 HOH A 46 385 94 HOH HOH . K 5 HOH A 47 386 98 HOH HOH . K 5 HOH A 48 387 102 HOH HOH . K 5 HOH A 49 388 103 HOH HOH . K 5 HOH A 50 389 104 HOH HOH . K 5 HOH A 51 390 105 HOH HOH . K 5 HOH A 52 391 106 HOH HOH . K 5 HOH A 53 392 108 HOH HOH . K 5 HOH A 54 393 109 HOH HOH . K 5 HOH A 55 394 113 HOH HOH . K 5 HOH A 56 395 114 HOH HOH . K 5 HOH A 57 396 119 HOH HOH . K 5 HOH A 58 397 120 HOH HOH . K 5 HOH A 59 398 122 HOH HOH . K 5 HOH A 60 399 124 HOH HOH . K 5 HOH A 61 400 126 HOH HOH . K 5 HOH A 62 401 128 HOH HOH . K 5 HOH A 63 402 132 HOH HOH . K 5 HOH A 64 403 133 HOH HOH . K 5 HOH A 65 404 138 HOH HOH . K 5 HOH A 66 405 139 HOH HOH . K 5 HOH A 67 406 145 HOH HOH . K 5 HOH A 68 407 146 HOH HOH . K 5 HOH A 69 408 147 HOH HOH . K 5 HOH A 70 409 152 HOH HOH . K 5 HOH A 71 410 153 HOH HOH . K 5 HOH A 72 411 156 HOH HOH . K 5 HOH A 73 412 157 HOH HOH . K 5 HOH A 74 413 160 HOH HOH . K 5 HOH A 75 414 161 HOH HOH . K 5 HOH A 76 415 163 HOH HOH . K 5 HOH A 77 416 164 HOH HOH . K 5 HOH A 78 417 166 HOH HOH . L 5 HOH B 1 340 11 HOH HOH . L 5 HOH B 2 341 17 HOH HOH . L 5 HOH B 3 342 19 HOH HOH . L 5 HOH B 4 343 20 HOH HOH . L 5 HOH B 5 344 21 HOH HOH . L 5 HOH B 6 345 22 HOH HOH . L 5 HOH B 7 346 24 HOH HOH . L 5 HOH B 8 347 28 HOH HOH . L 5 HOH B 9 348 31 HOH HOH . L 5 HOH B 10 349 32 HOH HOH . L 5 HOH B 11 350 34 HOH HOH . L 5 HOH B 12 351 36 HOH HOH . L 5 HOH B 13 352 38 HOH HOH . L 5 HOH B 14 353 39 HOH HOH . L 5 HOH B 15 354 41 HOH HOH . L 5 HOH B 16 355 42 HOH HOH . L 5 HOH B 17 356 44 HOH HOH . L 5 HOH B 18 357 46 HOH HOH . L 5 HOH B 19 358 47 HOH HOH . L 5 HOH B 20 359 49 HOH HOH . L 5 HOH B 21 360 50 HOH HOH . L 5 HOH B 22 361 52 HOH HOH . L 5 HOH B 23 362 53 HOH HOH . L 5 HOH B 24 363 58 HOH HOH . L 5 HOH B 25 364 60 HOH HOH . L 5 HOH B 26 365 61 HOH HOH . L 5 HOH B 27 366 70 HOH HOH . L 5 HOH B 28 367 71 HOH HOH . L 5 HOH B 29 368 75 HOH HOH . L 5 HOH B 30 369 83 HOH HOH . L 5 HOH B 31 370 84 HOH HOH . L 5 HOH B 32 371 86 HOH HOH . L 5 HOH B 33 372 87 HOH HOH . L 5 HOH B 34 373 90 HOH HOH . L 5 HOH B 35 374 91 HOH HOH . L 5 HOH B 36 375 93 HOH HOH . L 5 HOH B 37 376 95 HOH HOH . L 5 HOH B 38 377 96 HOH HOH . L 5 HOH B 39 378 97 HOH HOH . L 5 HOH B 40 379 99 HOH HOH . L 5 HOH B 41 380 100 HOH HOH . L 5 HOH B 42 381 101 HOH HOH . L 5 HOH B 43 382 107 HOH HOH . L 5 HOH B 44 383 110 HOH HOH . L 5 HOH B 45 384 111 HOH HOH . L 5 HOH B 46 385 112 HOH HOH . L 5 HOH B 47 386 115 HOH HOH . L 5 HOH B 48 387 116 HOH HOH . L 5 HOH B 49 388 117 HOH HOH . L 5 HOH B 50 389 118 HOH HOH . L 5 HOH B 51 390 123 HOH HOH . L 5 HOH B 52 391 125 HOH HOH . L 5 HOH B 53 392 127 HOH HOH . L 5 HOH B 54 393 129 HOH HOH . L 5 HOH B 55 394 130 HOH HOH . L 5 HOH B 56 395 131 HOH HOH . L 5 HOH B 57 396 134 HOH HOH . L 5 HOH B 58 397 135 HOH HOH . L 5 HOH B 59 398 140 HOH HOH . L 5 HOH B 60 399 141 HOH HOH . L 5 HOH B 61 400 142 HOH HOH . L 5 HOH B 62 401 143 HOH HOH . L 5 HOH B 63 402 144 HOH HOH . L 5 HOH B 64 403 148 HOH HOH . L 5 HOH B 65 404 149 HOH HOH . L 5 HOH B 66 405 154 HOH HOH . L 5 HOH B 67 406 162 HOH HOH . L 5 HOH B 68 407 165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . F 4 35.865 90.582 -13.385 1 22.41 ? P AMP 339 A 1 HETATM 2 O O1P AMP . . . F 4 35.918 89.688 -14.585 1 25.83 ? O1P AMP 339 A 1 HETATM 3 O O2P AMP . . . F 4 37.164 91.171 -13.2 1 20.71 ? O2P AMP 339 A 1 HETATM 4 O O3P AMP . . . F 4 35.504 89.655 -12.229 1 28.39 ? O3P AMP 339 A 1 HETATM 5 O O5' AMP . . . F 4 34.693 91.594 -13.505 1 19.93 ? O5' AMP 339 A 1 HETATM 6 C C5' AMP . . . F 4 34.998 92.727 -14.343 1 17.33 ? C5' AMP 339 A 1 HETATM 7 C C4' AMP . . . F 4 34.082 93.89 -14.057 1 18.74 ? C4' AMP 339 A 1 HETATM 8 O O4' AMP . . . F 4 32.746 93.474 -13.921 1 20.97 ? O4' AMP 339 A 1 HETATM 9 C C3' AMP . . . F 4 34.448 94.541 -12.731 1 20.43 ? C3' AMP 339 A 1 HETATM 10 O O3' AMP . . . F 4 35.511 95.211 -12.712 1 23.05 ? O3' AMP 339 A 1 HETATM 11 C C2' AMP . . . F 4 33.15 95.204 -12.295 1 24.69 ? C2' AMP 339 A 1 HETATM 12 O O2' AMP . . . F 4 33.105 96.312 -12.991 1 24.93 ? O2' AMP 339 A 1 HETATM 13 C C1' AMP . . . F 4 32.215 94.022 -12.708 1 24.22 ? C1' AMP 339 A 1 HETATM 14 N N9 AMP . . . F 4 31.966 92.986 -11.683 1 25.62 ? N9 AMP 339 A 1 HETATM 15 C C8 AMP . . . F 4 32.633 91.804 -11.604 1 25.87 ? C8 AMP 339 A 1 HETATM 16 N N7 AMP . . . F 4 32.2 91.133 -10.519 1 25.82 ? N7 AMP 339 A 1 HETATM 17 C C5 AMP . . . F 4 31.253 91.884 -9.833 1 26.38 ? C5 AMP 339 A 1 HETATM 18 C C6 AMP . . . F 4 30.487 91.791 -8.65 1 27.03 ? C6 AMP 339 A 1 HETATM 19 N N6 AMP . . . F 4 30.437 90.73 -7.805 1 22.14 ? N6 AMP 339 A 1 HETATM 20 N N1 AMP . . . F 4 29.692 92.833 -8.346 1 27.66 ? N1 AMP 339 A 1 HETATM 21 C C2 AMP . . . F 4 29.584 93.968 -9.093 1 27.44 ? C2 AMP 339 A 1 HETATM 22 N N3 AMP . . . F 4 30.314 94.125 -10.246 1 27.22 ? N3 AMP 339 A 1 HETATM 23 C C4 AMP . . . F 4 31.119 93.068 -10.59 1 26.16 ? C4 AMP 339 A 1 # _model_server_stats.io_time_ms 89 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 1077 _model_server_stats.encode_time_ms 28 _model_server_stats.element_count 23 #