data_1FPF # _model_server_result.job_id E4FXgBCACn8PDJkfNAiSBw _model_server_result.datetime_utc '2024-12-01 23:23:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fpf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":338}' # _entry.id 1FPF # _exptl.entry_id 1FPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 324.116 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,5-anhydro-1,6-di-O-phosphono-D-glucitol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FPF _cell.length_a 61.1 _cell.length_b 166.6 _cell.length_c 80.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 61.1 166.6 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 97 A GLU 97 1_555 C MN MN . A MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc2 A OD2 ASP 118 A ASP 118 1_555 C MN MN . A MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc3 A OD1 ASP 118 A ASP 118 1_555 D MN MN . A MN 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc4 A OD1 ASP 121 A ASP 121 1_555 C MN MN . A MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc5 A OE2 GLU 280 A GLU 280 1_555 C MN MN . A MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc6 C MN MN . A MN 336 1_555 E O1P AHG . A AHG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc7 B OE1 GLU 97 B GLU 97 1_555 G MN MN . B MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc8 B OD2 ASP 118 B ASP 118 1_555 G MN MN . B MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc9 B OD1 ASP 118 B ASP 118 1_555 H MN MN . B MN 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc10 B O LEU 120 B LEU 120 1_555 H MN MN . B MN 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc11 B OD1 ASP 121 B ASP 121 1_555 G MN MN . B MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc12 B OE2 GLU 280 B GLU 280 1_555 G MN MN . B MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc13 G MN MN . B MN 336 1_555 I O1P AHG . B AHG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? # _chem_comp.formula 'C6 H14 O11 P2' _chem_comp.formula_weight 324.116 _chem_comp.id AHG _chem_comp.mon_nstd_flag . _chem_comp.name 2,5-anhydro-1,6-di-O-phosphono-D-glucitol _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 2,5-ANHYDROGLUCITOL-1,6-BIPHOSPHATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P AHG doub 1 n n P1 O2P AHG sing 2 n n P1 O3P AHG sing 3 n n P1 O1 AHG sing 4 n n O2P HOP2 AHG sing 5 n n O3P HOP3 AHG sing 6 n n O1 C1 AHG sing 7 n n C1 C2 AHG sing 8 n n C1 H11 AHG sing 9 n n C1 H12 AHG sing 10 n n C2 C3 AHG sing 11 n n C2 O5 AHG sing 12 n n C2 H2 AHG sing 13 n n C3 O3 AHG sing 14 n n C3 C4 AHG sing 15 n n C3 H3 AHG sing 16 n n O3 HO3 AHG sing 17 n n C4 O4 AHG sing 18 n n C4 C5 AHG sing 19 n n C4 H4 AHG sing 20 n n O4 HO4 AHG sing 21 n n C5 O5 AHG sing 22 n n C5 C6 AHG sing 23 n n C5 H5 AHG sing 24 n n C6 O6 AHG sing 25 n n C6 H61 AHG sing 26 n n C6 H62 AHG sing 27 n n O6 P2 AHG sing 28 n n P2 O4P AHG doub 29 n n P2 O5P AHG sing 30 n n P2 O6P AHG sing 31 n n O5P HOP5 AHG sing 32 n n O6P HOP6 AHG sing 33 n n # _atom_sites.entry_id 1FPF _atom_sites.fract_transf_matrix[1][1] 0.016367 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006002 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 336 1 MN MN . D 2 MN A 1 337 2 MN MN . E 3 AHG A 1 338 3 AHG AHG . F 4 AMP A 1 339 4 AMP AMP . G 2 MN B 1 336 1 MN MN . H 2 MN B 1 337 2 MN MN . I 3 AHG B 1 338 3 AHG AHG . J 4 AMP B 1 339 4 AMP AMP . K 5 HOH A 1 340 11 HOH HOH . K 5 HOH A 2 341 13 HOH HOH . K 5 HOH A 3 342 16 HOH HOH . K 5 HOH A 4 343 23 HOH HOH . K 5 HOH A 5 344 25 HOH HOH . K 5 HOH A 6 345 26 HOH HOH . K 5 HOH A 7 346 27 HOH HOH . K 5 HOH A 8 347 29 HOH HOH . K 5 HOH A 9 348 30 HOH HOH . K 5 HOH A 10 349 33 HOH HOH . K 5 HOH A 11 350 35 HOH HOH . K 5 HOH A 12 351 37 HOH HOH . K 5 HOH A 13 352 43 HOH HOH . K 5 HOH A 14 353 45 HOH HOH . K 5 HOH A 15 354 48 HOH HOH . K 5 HOH A 16 355 51 HOH HOH . K 5 HOH A 17 356 54 HOH HOH . K 5 HOH A 18 357 55 HOH HOH . K 5 HOH A 19 358 56 HOH HOH . K 5 HOH A 20 359 57 HOH HOH . K 5 HOH A 21 360 59 HOH HOH . K 5 HOH A 22 361 62 HOH HOH . K 5 HOH A 23 362 63 HOH HOH . K 5 HOH A 24 363 64 HOH HOH . K 5 HOH A 25 364 65 HOH HOH . K 5 HOH A 26 365 66 HOH HOH . K 5 HOH A 27 366 67 HOH HOH . K 5 HOH A 28 367 68 HOH HOH . K 5 HOH A 29 368 69 HOH HOH . K 5 HOH A 30 369 72 HOH HOH . K 5 HOH A 31 370 73 HOH HOH . K 5 HOH A 32 371 74 HOH HOH . K 5 HOH A 33 372 76 HOH HOH . K 5 HOH A 34 373 77 HOH HOH . K 5 HOH A 35 374 79 HOH HOH . K 5 HOH A 36 375 80 HOH HOH . K 5 HOH A 37 376 81 HOH HOH . K 5 HOH A 38 377 82 HOH HOH . K 5 HOH A 39 378 85 HOH HOH . K 5 HOH A 40 379 86 HOH HOH . K 5 HOH A 41 380 88 HOH HOH . K 5 HOH A 42 381 89 HOH HOH . K 5 HOH A 43 382 92 HOH HOH . K 5 HOH A 44 383 94 HOH HOH . K 5 HOH A 45 384 95 HOH HOH . K 5 HOH A 46 385 98 HOH HOH . K 5 HOH A 47 386 102 HOH HOH . K 5 HOH A 48 387 103 HOH HOH . K 5 HOH A 49 388 104 HOH HOH . K 5 HOH A 50 389 105 HOH HOH . K 5 HOH A 51 390 106 HOH HOH . K 5 HOH A 52 391 108 HOH HOH . K 5 HOH A 53 392 109 HOH HOH . K 5 HOH A 54 393 113 HOH HOH . K 5 HOH A 55 394 119 HOH HOH . K 5 HOH A 56 395 121 HOH HOH . K 5 HOH A 57 396 124 HOH HOH . K 5 HOH A 58 397 125 HOH HOH . K 5 HOH A 59 398 127 HOH HOH . K 5 HOH A 60 399 128 HOH HOH . K 5 HOH A 61 400 129 HOH HOH . K 5 HOH A 62 401 130 HOH HOH . K 5 HOH A 63 402 132 HOH HOH . K 5 HOH A 64 403 133 HOH HOH . K 5 HOH A 65 404 136 HOH HOH . K 5 HOH A 66 405 138 HOH HOH . K 5 HOH A 67 406 139 HOH HOH . K 5 HOH A 68 407 144 HOH HOH . K 5 HOH A 69 408 145 HOH HOH . K 5 HOH A 70 409 146 HOH HOH . K 5 HOH A 71 410 147 HOH HOH . K 5 HOH A 72 411 151 HOH HOH . K 5 HOH A 73 412 152 HOH HOH . K 5 HOH A 74 413 153 HOH HOH . K 5 HOH A 75 414 154 HOH HOH . K 5 HOH A 76 415 155 HOH HOH . K 5 HOH A 77 416 156 HOH HOH . K 5 HOH A 78 417 157 HOH HOH . K 5 HOH A 79 418 165 HOH HOH . K 5 HOH A 80 419 166 HOH HOH . K 5 HOH A 81 420 167 HOH HOH . K 5 HOH A 82 421 168 HOH HOH . K 5 HOH A 83 422 173 HOH HOH . K 5 HOH A 84 423 175 HOH HOH . L 5 HOH B 1 340 12 HOH HOH . L 5 HOH B 2 341 14 HOH HOH . L 5 HOH B 3 342 15 HOH HOH . L 5 HOH B 4 343 17 HOH HOH . L 5 HOH B 5 344 18 HOH HOH . L 5 HOH B 6 345 19 HOH HOH . L 5 HOH B 7 346 20 HOH HOH . L 5 HOH B 8 347 21 HOH HOH . L 5 HOH B 9 348 22 HOH HOH . L 5 HOH B 10 349 24 HOH HOH . L 5 HOH B 11 350 28 HOH HOH . L 5 HOH B 12 351 31 HOH HOH . L 5 HOH B 13 352 32 HOH HOH . L 5 HOH B 14 353 34 HOH HOH . L 5 HOH B 15 354 36 HOH HOH . L 5 HOH B 16 355 38 HOH HOH . L 5 HOH B 17 356 39 HOH HOH . L 5 HOH B 18 357 40 HOH HOH . L 5 HOH B 19 358 41 HOH HOH . L 5 HOH B 20 359 42 HOH HOH . L 5 HOH B 21 360 44 HOH HOH . L 5 HOH B 22 361 46 HOH HOH . L 5 HOH B 23 362 47 HOH HOH . L 5 HOH B 24 363 49 HOH HOH . L 5 HOH B 25 364 50 HOH HOH . L 5 HOH B 26 365 52 HOH HOH . L 5 HOH B 27 366 53 HOH HOH . L 5 HOH B 28 367 58 HOH HOH . L 5 HOH B 29 368 60 HOH HOH . L 5 HOH B 30 369 61 HOH HOH . L 5 HOH B 31 370 70 HOH HOH . L 5 HOH B 32 371 71 HOH HOH . L 5 HOH B 33 372 75 HOH HOH . L 5 HOH B 34 373 83 HOH HOH . L 5 HOH B 35 374 84 HOH HOH . L 5 HOH B 36 375 90 HOH HOH . L 5 HOH B 37 376 91 HOH HOH . L 5 HOH B 38 377 93 HOH HOH . L 5 HOH B 39 378 96 HOH HOH . L 5 HOH B 40 379 97 HOH HOH . L 5 HOH B 41 380 99 HOH HOH . L 5 HOH B 42 381 100 HOH HOH . L 5 HOH B 43 382 101 HOH HOH . L 5 HOH B 44 383 107 HOH HOH . L 5 HOH B 45 384 110 HOH HOH . L 5 HOH B 46 385 111 HOH HOH . L 5 HOH B 47 386 112 HOH HOH . L 5 HOH B 48 387 115 HOH HOH . L 5 HOH B 49 388 116 HOH HOH . L 5 HOH B 50 389 117 HOH HOH . L 5 HOH B 51 390 118 HOH HOH . L 5 HOH B 52 391 123 HOH HOH . L 5 HOH B 53 392 126 HOH HOH . L 5 HOH B 54 393 131 HOH HOH . L 5 HOH B 55 394 134 HOH HOH . L 5 HOH B 56 395 135 HOH HOH . L 5 HOH B 57 396 137 HOH HOH . L 5 HOH B 58 397 140 HOH HOH . L 5 HOH B 59 398 141 HOH HOH . L 5 HOH B 60 399 148 HOH HOH . L 5 HOH B 61 400 149 HOH HOH . L 5 HOH B 62 401 150 HOH HOH . L 5 HOH B 63 402 158 HOH HOH . L 5 HOH B 64 403 160 HOH HOH . L 5 HOH B 65 404 161 HOH HOH . L 5 HOH B 66 405 162 HOH HOH . L 5 HOH B 67 406 164 HOH HOH . L 5 HOH B 68 407 171 HOH HOH . L 5 HOH B 69 408 172 HOH HOH . L 5 HOH B 70 409 174 HOH HOH . L 5 HOH B 71 410 176 HOH HOH . L 5 HOH B 72 411 177 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 AHG . . . E 3 45.164 107.103 12.657 1 49.69 ? P1 AHG 338 A 1 HETATM 2 O O1P AHG . . . E 3 44.532 105.853 11.998 1 43.85 ? O1P AHG 338 A 1 HETATM 3 O O2P AHG . . . E 3 45.951 106.791 13.93 1 46.43 ? O2P AHG 338 A 1 HETATM 4 O O3P AHG . . . E 3 46.057 107.76 11.586 1 47.13 ? O3P AHG 338 A 1 HETATM 5 O O1 AHG . . . E 3 44.137 108.187 13.121 1 40.29 ? O1 AHG 338 A 1 HETATM 6 C C1 AHG . . . E 3 42.854 108.195 12.709 1 30.67 ? C1 AHG 338 A 1 HETATM 7 C C2 AHG . . . E 3 42.605 109.535 12.16 1 25.91 ? C2 AHG 338 A 1 HETATM 8 C C3 AHG . . . E 3 41.158 109.683 11.752 1 22.97 ? C3 AHG 338 A 1 HETATM 9 O O3 AHG . . . E 3 40.501 108.383 12.03 1 19.51 ? O3 AHG 338 A 1 HETATM 10 C C4 AHG . . . E 3 40.594 110.812 12.658 1 19.18 ? C4 AHG 338 A 1 HETATM 11 O O4 AHG . . . E 3 39.486 111.277 11.873 1 22.75 ? O4 AHG 338 A 1 HETATM 12 C C5 AHG . . . E 3 41.815 111.642 12.955 1 21.74 ? C5 AHG 338 A 1 HETATM 13 O O5 AHG . . . E 3 42.752 110.593 13.118 1 25.78 ? O5 AHG 338 A 1 HETATM 14 C C6 AHG . . . E 3 41.614 112.473 14.219 1 20.55 ? C6 AHG 338 A 1 HETATM 15 O O6 AHG . . . E 3 42.745 113.332 14.284 1 21.79 ? O6 AHG 338 A 1 HETATM 16 P P2 AHG . . . E 3 42.788 114.5 15.378 1 18.8 ? P2 AHG 338 A 1 HETATM 17 O O4P AHG . . . E 3 43.23 114.04 16.732 1 19.05 ? O4P AHG 338 A 1 HETATM 18 O O5P AHG . . . E 3 41.389 115.053 15.427 1 15.61 ? O5P AHG 338 A 1 HETATM 19 O O6P AHG . . . E 3 43.79 115.379 14.767 1 17.05 ? O6P AHG 338 A 1 HETATM 20 H H11 AHG . . . E 3 42.722 107.413 11.985 1 15 ? H11 AHG 338 A 1 HETATM 21 H H12 AHG . . . E 3 42.259 107.954 13.589 1 15 ? H12 AHG 338 A 1 HETATM 22 H H2 AHG . . . E 3 43.338 109.703 11.363 1 15 ? H2 AHG 338 A 1 HETATM 23 H H3 AHG . . . E 3 41.36 110.098 10.695 1 15 ? H3 AHG 338 A 1 HETATM 24 H HO3 AHG . . . E 3 39.679 108.024 11.575 1 15 ? HO3 AHG 338 A 1 HETATM 25 H H4 AHG . . . E 3 40.315 110.327 13.641 1 15 ? H4 AHG 338 A 1 HETATM 26 H HO4 AHG . . . E 3 39.208 112.206 11.675 1 15 ? HO4 AHG 338 A 1 HETATM 27 H H5 AHG . . . E 3 42.228 112.293 12.176 1 15 ? H5 AHG 338 A 1 HETATM 28 H H61 AHG . . . E 3 41.568 111.873 15.118 1 15 ? H61 AHG 338 A 1 HETATM 29 H H62 AHG . . . E 3 40.719 113.068 14.282 1 15 ? H62 AHG 338 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #