data_1FPG # _model_server_result.job_id 4DJVpe5tAtBJnLArcwKSLw _model_server_result.datetime_utc '2024-11-25 18:55:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fpg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":338}' # _entry.id 1FPG # _exptl.entry_id 1FPG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 324.116 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,5-anhydro-1,6-di-O-phosphono-D-glucitol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FPG _cell.length_a 61.1 _cell.length_b 166.5 _cell.length_c 80 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 61.1 166.5 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OD1 ASP 121 A ASP 121 1_555 E O1P AHG . A AHG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc1 A OE1 GLU 97 A GLU 97 1_555 C MN MN . A MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc2 A OE2 GLU 97 A GLU 97 1_555 D MN MN . A MN 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc3 A OD2 ASP 118 A ASP 118 1_555 C MN MN . A MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc4 A OD1 ASP 118 A ASP 118 1_555 D MN MN . A MN 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc5 A O LEU 120 A LEU 120 1_555 D MN MN . A MN 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc6 A OD1 ASP 121 A ASP 121 1_555 C MN MN . A MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc7 A OE1 GLU 280 A GLU 280 1_555 C MN MN . A MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc8 C MN MN . A MN 336 1_555 E O1P AHG . A AHG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc9 C MN MN . A MN 336 1_555 E O3P AHG . A AHG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc10 B OE2 GLU 97 B GLU 97 1_555 G MN MN . B MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc11 B OE2 GLU 98 B GLU 98 1_555 H MN MN . B MN 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc12 B OD2 ASP 118 B ASP 118 1_555 G MN MN . B MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc13 B OD1 ASP 118 B ASP 118 1_555 H MN MN . B MN 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc14 B O LEU 120 B LEU 120 1_555 H MN MN . B MN 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc15 B OD1 ASP 121 B ASP 121 1_555 G MN MN . B MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc16 B OE2 GLU 280 B GLU 280 1_555 G MN MN . B MN 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc17 G MN MN . B MN 336 1_555 I O1P AHG . B AHG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? # _chem_comp.formula 'C6 H14 O11 P2' _chem_comp.formula_weight 324.116 _chem_comp.id AHG _chem_comp.mon_nstd_flag . _chem_comp.name 2,5-anhydro-1,6-di-O-phosphono-D-glucitol _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1FPG _atom_sites.fract_transf_matrix[1][1] 0.016367 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 336 1 MN MN . D 2 MN A 1 337 2 MN MN . E 3 AHG A 1 338 3 AHG AHG . F 4 AMP A 1 339 4 AMP AMP . G 2 MN B 1 336 1 MN MN . H 2 MN B 1 337 2 MN MN . I 3 AHG B 1 338 3 AHG AHG . J 4 AMP B 1 339 4 AMP AMP . K 5 HOH A 1 340 11 HOH HOH . K 5 HOH A 2 341 13 HOH HOH . K 5 HOH A 3 342 16 HOH HOH . K 5 HOH A 4 343 18 HOH HOH . K 5 HOH A 5 344 23 HOH HOH . K 5 HOH A 6 345 25 HOH HOH . K 5 HOH A 7 346 26 HOH HOH . K 5 HOH A 8 347 27 HOH HOH . K 5 HOH A 9 348 29 HOH HOH . K 5 HOH A 10 349 30 HOH HOH . K 5 HOH A 11 350 33 HOH HOH . K 5 HOH A 12 351 35 HOH HOH . K 5 HOH A 13 352 37 HOH HOH . K 5 HOH A 14 353 43 HOH HOH . K 5 HOH A 15 354 45 HOH HOH . K 5 HOH A 16 355 48 HOH HOH . K 5 HOH A 17 356 51 HOH HOH . K 5 HOH A 18 357 54 HOH HOH . K 5 HOH A 19 358 55 HOH HOH . K 5 HOH A 20 359 56 HOH HOH . K 5 HOH A 21 360 57 HOH HOH . K 5 HOH A 22 361 59 HOH HOH . K 5 HOH A 23 362 62 HOH HOH . K 5 HOH A 24 363 63 HOH HOH . K 5 HOH A 25 364 64 HOH HOH . K 5 HOH A 26 365 66 HOH HOH . K 5 HOH A 27 366 67 HOH HOH . K 5 HOH A 28 367 68 HOH HOH . K 5 HOH A 29 368 69 HOH HOH . K 5 HOH A 30 369 72 HOH HOH . K 5 HOH A 31 370 73 HOH HOH . K 5 HOH A 32 371 74 HOH HOH . K 5 HOH A 33 372 76 HOH HOH . K 5 HOH A 34 373 77 HOH HOH . K 5 HOH A 35 374 78 HOH HOH . K 5 HOH A 36 375 79 HOH HOH . K 5 HOH A 37 376 80 HOH HOH . K 5 HOH A 38 377 81 HOH HOH . K 5 HOH A 39 378 82 HOH HOH . K 5 HOH A 40 379 85 HOH HOH . K 5 HOH A 41 380 86 HOH HOH . K 5 HOH A 42 381 88 HOH HOH . K 5 HOH A 43 382 89 HOH HOH . K 5 HOH A 44 383 92 HOH HOH . K 5 HOH A 45 384 94 HOH HOH . K 5 HOH A 46 385 95 HOH HOH . K 5 HOH A 47 386 98 HOH HOH . K 5 HOH A 48 387 102 HOH HOH . K 5 HOH A 49 388 104 HOH HOH . K 5 HOH A 50 389 105 HOH HOH . K 5 HOH A 51 390 106 HOH HOH . K 5 HOH A 52 391 108 HOH HOH . K 5 HOH A 53 392 109 HOH HOH . K 5 HOH A 54 393 113 HOH HOH . K 5 HOH A 55 394 117 HOH HOH . K 5 HOH A 56 395 119 HOH HOH . K 5 HOH A 57 396 121 HOH HOH . K 5 HOH A 58 397 122 HOH HOH . K 5 HOH A 59 398 125 HOH HOH . K 5 HOH A 60 399 127 HOH HOH . K 5 HOH A 61 400 128 HOH HOH . K 5 HOH A 62 401 129 HOH HOH . K 5 HOH A 63 402 130 HOH HOH . K 5 HOH A 64 403 138 HOH HOH . K 5 HOH A 65 404 139 HOH HOH . K 5 HOH A 66 405 145 HOH HOH . K 5 HOH A 67 406 146 HOH HOH . K 5 HOH A 68 407 147 HOH HOH . K 5 HOH A 69 408 151 HOH HOH . K 5 HOH A 70 409 152 HOH HOH . K 5 HOH A 71 410 153 HOH HOH . K 5 HOH A 72 411 154 HOH HOH . K 5 HOH A 73 412 155 HOH HOH . K 5 HOH A 74 413 156 HOH HOH . K 5 HOH A 75 414 157 HOH HOH . K 5 HOH A 76 415 160 HOH HOH . K 5 HOH A 77 416 165 HOH HOH . K 5 HOH A 78 417 166 HOH HOH . K 5 HOH A 79 418 168 HOH HOH . K 5 HOH A 80 419 169 HOH HOH . K 5 HOH A 81 420 174 HOH HOH . K 5 HOH A 82 421 175 HOH HOH . K 5 HOH A 83 422 179 HOH HOH . K 5 HOH A 84 423 181 HOH HOH . K 5 HOH A 85 424 182 HOH HOH . L 5 HOH B 1 340 12 HOH HOH . L 5 HOH B 2 341 14 HOH HOH . L 5 HOH B 3 342 15 HOH HOH . L 5 HOH B 4 343 17 HOH HOH . L 5 HOH B 5 344 19 HOH HOH . L 5 HOH B 6 345 20 HOH HOH . L 5 HOH B 7 346 21 HOH HOH . L 5 HOH B 8 347 22 HOH HOH . L 5 HOH B 9 348 24 HOH HOH . L 5 HOH B 10 349 28 HOH HOH . L 5 HOH B 11 350 31 HOH HOH . L 5 HOH B 12 351 32 HOH HOH . L 5 HOH B 13 352 34 HOH HOH . L 5 HOH B 14 353 36 HOH HOH . L 5 HOH B 15 354 38 HOH HOH . L 5 HOH B 16 355 39 HOH HOH . L 5 HOH B 17 356 40 HOH HOH . L 5 HOH B 18 357 41 HOH HOH . L 5 HOH B 19 358 42 HOH HOH . L 5 HOH B 20 359 44 HOH HOH . L 5 HOH B 21 360 46 HOH HOH . L 5 HOH B 22 361 47 HOH HOH . L 5 HOH B 23 362 49 HOH HOH . L 5 HOH B 24 363 50 HOH HOH . L 5 HOH B 25 364 52 HOH HOH . L 5 HOH B 26 365 53 HOH HOH . L 5 HOH B 27 366 58 HOH HOH . L 5 HOH B 28 367 60 HOH HOH . L 5 HOH B 29 368 61 HOH HOH . L 5 HOH B 30 369 65 HOH HOH . L 5 HOH B 31 370 70 HOH HOH . L 5 HOH B 32 371 71 HOH HOH . L 5 HOH B 33 372 75 HOH HOH . L 5 HOH B 34 373 83 HOH HOH . L 5 HOH B 35 374 84 HOH HOH . L 5 HOH B 36 375 90 HOH HOH . L 5 HOH B 37 376 91 HOH HOH . L 5 HOH B 38 377 93 HOH HOH . L 5 HOH B 39 378 96 HOH HOH . L 5 HOH B 40 379 97 HOH HOH . L 5 HOH B 41 380 99 HOH HOH . L 5 HOH B 42 381 100 HOH HOH . L 5 HOH B 43 382 101 HOH HOH . L 5 HOH B 44 383 107 HOH HOH . L 5 HOH B 45 384 110 HOH HOH . L 5 HOH B 46 385 111 HOH HOH . L 5 HOH B 47 386 112 HOH HOH . L 5 HOH B 48 387 115 HOH HOH . L 5 HOH B 49 388 116 HOH HOH . L 5 HOH B 50 389 118 HOH HOH . L 5 HOH B 51 390 123 HOH HOH . L 5 HOH B 52 391 126 HOH HOH . L 5 HOH B 53 392 131 HOH HOH . L 5 HOH B 54 393 132 HOH HOH . L 5 HOH B 55 394 134 HOH HOH . L 5 HOH B 56 395 135 HOH HOH . L 5 HOH B 57 396 137 HOH HOH . L 5 HOH B 58 397 140 HOH HOH . L 5 HOH B 59 398 141 HOH HOH . L 5 HOH B 60 399 143 HOH HOH . L 5 HOH B 61 400 148 HOH HOH . L 5 HOH B 62 401 149 HOH HOH . L 5 HOH B 63 402 150 HOH HOH . L 5 HOH B 64 403 158 HOH HOH . L 5 HOH B 65 404 161 HOH HOH . L 5 HOH B 66 405 162 HOH HOH . L 5 HOH B 67 406 164 HOH HOH . L 5 HOH B 68 407 170 HOH HOH . L 5 HOH B 69 408 171 HOH HOH . L 5 HOH B 70 409 172 HOH HOH . L 5 HOH B 71 410 176 HOH HOH . L 5 HOH B 72 411 177 HOH HOH . L 5 HOH B 73 412 178 HOH HOH . L 5 HOH B 74 413 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 AHG . . . I 3 20.234 108.565 26.805 1 66.9 ? P1 AHG 338 B 1 HETATM 2 O O1P AHG . . . I 3 20.108 107.449 27.819 1 56.53 ? O1P AHG 338 B 1 HETATM 3 O O2P AHG . . . I 3 19.886 108.011 25.428 1 64.89 ? O2P AHG 338 B 1 HETATM 4 O O3P AHG . . . I 3 19.259 109.715 27.141 1 65.83 ? O3P AHG 338 B 1 HETATM 5 O O1 AHG . . . I 3 21.798 109.187 26.749 1 55.45 ? O1 AHG 338 B 1 HETATM 6 C C1 AHG . . . I 3 22.018 110.416 26.052 1 42.32 ? C1 AHG 338 B 1 HETATM 7 C C2 AHG . . . I 3 22.822 111.332 26.973 1 33.43 ? C2 AHG 338 B 1 HETATM 8 C C3 AHG . . . I 3 24.167 110.849 27.487 1 26.44 ? C3 AHG 338 B 1 HETATM 9 O O3 AHG . . . I 3 24.678 109.569 26.976 1 21.22 ? O3 AHG 338 B 1 HETATM 10 C C4 AHG . . . I 3 25.193 111.897 26.797 1 23.68 ? C4 AHG 338 B 1 HETATM 11 O O4 AHG . . . I 3 26.528 112.269 27.235 1 23.96 ? O4 AHG 338 B 1 HETATM 12 C C5 AHG . . . I 3 24.418 113.138 26.476 1 26.68 ? C5 AHG 338 B 1 HETATM 13 O O5 AHG . . . I 3 23.168 112.538 26.248 1 28.21 ? O5 AHG 338 B 1 HETATM 14 C C6 AHG . . . I 3 24.758 113.925 25.195 1 24.02 ? C6 AHG 338 B 1 HETATM 15 O O6 AHG . . . I 3 23.553 114.633 24.794 1 26.55 ? O6 AHG 338 B 1 HETATM 16 P P2 AHG . . . I 3 23.725 115.998 23.894 1 26.66 ? P2 AHG 338 B 1 HETATM 17 O O4P AHG . . . I 3 23.25 115.697 22.513 1 32.32 ? O4P AHG 338 B 1 HETATM 18 O O5P AHG . . . I 3 25.229 116.347 23.84 1 21.29 ? O5P AHG 338 B 1 HETATM 19 O O6P AHG . . . I 3 22.933 117.101 24.445 1 25.79 ? O6P AHG 338 B 1 HETATM 20 H H11 AHG . . . I 3 22.459 110.289 25.056 1 15 ? H11 AHG 338 B 1 HETATM 21 H H12 AHG . . . I 3 21.081 110.888 25.769 1 15 ? H12 AHG 338 B 1 HETATM 22 H H2 AHG . . . I 3 22.121 111.606 27.768 1 15 ? H2 AHG 338 B 1 HETATM 23 H H3 AHG . . . I 3 24.079 111.042 28.612 1 15 ? H3 AHG 338 B 1 HETATM 24 H HO3 AHG . . . I 3 24.218 108.679 27.041 1 15 ? HO3 AHG 338 B 1 HETATM 25 H H4 AHG . . . I 3 25.303 111.465 25.757 1 15 ? H4 AHG 338 B 1 HETATM 26 H HO4 AHG . . . I 3 26.864 112.17 28.161 1 15 ? HO4 AHG 338 B 1 HETATM 27 H H5 AHG . . . I 3 24.287 113.831 27.3 1 15 ? H5 AHG 338 B 1 HETATM 28 H H61 AHG . . . I 3 25.125 113.325 24.373 1 15 ? H61 AHG 338 B 1 HETATM 29 H H62 AHG . . . I 3 25.564 114.594 25.417 1 15 ? H62 AHG 338 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #