data_1FPI # _model_server_result.job_id Tk7ZA2ZXRQKRzvzs3zf-MQ _model_server_result.datetime_utc '2024-10-20 19:39:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fpi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":339}' # _entry.id 1FPI # _exptl.entry_id 1FPI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FPI _cell.length_a 61.2 _cell.length_b 167.1 _cell.length_c 80 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FPI _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 61.2 167.1 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 97 A GLU 97 1_555 C K K . A K 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc2 A OE1 GLU 97 A GLU 97 1_555 D K K . A K 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc3 A OE2 GLU 97 A GLU 97 1_555 D K K . A K 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? metalc ? metalc4 A OE2 GLU 98 A GLU 98 1_555 C K K . A K 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc5 A OD1 ASP 118 A ASP 118 1_555 C K K . A K 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.053 ? metalc ? metalc6 A OD2 ASP 118 A ASP 118 1_555 D K K . A K 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc7 A O LEU 120 A LEU 120 1_555 C K K . A K 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc8 A OD1 ASP 121 A ASP 121 1_555 D K K . A K 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc9 A OG SER 123 A SER 123 1_555 C K K . A K 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.398 ? metalc ? metalc10 A NH1 ARG 276 A ARG 276 1_555 E K K . A K 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.324 ? metalc ? metalc11 A OE2 GLU 280 A GLU 280 1_555 D K K . A K 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? metalc ? metalc12 A OE1 GLU 280 A GLU 280 1_555 E K K . A K 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.224 ? metalc ? metalc13 A OE2 GLU 280 A GLU 280 1_555 E K K . A K 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.255 ? metalc ? metalc14 D K K . A K 337 1_555 E K K . A K 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.346 ? metalc ? metalc15 D K K . A K 337 1_555 G O3P AHG . A AHG 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc16 D K K . A K 337 1_555 G O2P AHG . A AHG 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.299 ? metalc ? metalc17 B OE1 GLU 97 B GLU 97 1_555 H K K . B K 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc18 B OE2 GLU 97 B GLU 97 1_555 H K K . B K 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc19 B OE2 GLU 97 B GLU 97 1_555 I K K . B K 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.2 ? metalc ? metalc20 B OE2 GLU 98 B GLU 98 1_555 I K K . B K 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.065 ? metalc ? metalc21 B OD2 ASP 118 B ASP 118 1_555 H K K . B K 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc22 B OD1 ASP 118 B ASP 118 1_555 I K K . B K 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc23 B O LEU 120 B LEU 120 1_555 I K K . B K 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc24 B OD1 ASP 121 B ASP 121 1_555 H K K . B K 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc25 B NH1 ARG 276 B ARG 276 1_555 J K K . B K 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.024 ? metalc ? metalc26 B OE2 GLU 280 B GLU 280 1_555 H K K . B K 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc27 B OE1 GLU 280 B GLU 280 1_555 J K K . B K 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.26 ? metalc ? metalc28 B OE2 GLU 280 B GLU 280 1_555 J K K . B K 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.06 ? metalc ? metalc29 H K K . B K 336 1_555 J K K . B K 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.455 ? metalc ? metalc30 H K K . B K 336 1_555 L O3P AHG . B AHG 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.563 ? metalc ? metalc31 H K K . B K 336 1_555 L O1P AHG . B AHG 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 46 n n P O2P AMP sing 47 n n P O3P AMP sing 48 n n P O5' AMP sing 49 n n O2P HOP2 AMP sing 50 n n O3P HOP3 AMP sing 51 n n O5' C5' AMP sing 52 n n C5' C4' AMP sing 53 n n C5' "H5'1" AMP sing 54 n n C5' "H5'2" AMP sing 55 n n C4' O4' AMP sing 56 n n C4' C3' AMP sing 57 n n C4' H4' AMP sing 58 n n O4' C1' AMP sing 59 n n C3' O3' AMP sing 60 n n C3' C2' AMP sing 61 n n C3' H3' AMP sing 62 n n O3' HO3' AMP sing 63 n n C2' O2' AMP sing 64 n n C2' C1' AMP sing 65 n n C2' H2' AMP sing 66 n n O2' HO2' AMP sing 67 n n C1' N9 AMP sing 68 n n C1' H1' AMP sing 69 n n N9 C8 AMP sing 70 n y N9 C4 AMP sing 71 n y C8 N7 AMP doub 72 n y C8 H8 AMP sing 73 n n N7 C5 AMP sing 74 n y C5 C6 AMP sing 75 n y C5 C4 AMP doub 76 n y C6 N6 AMP sing 77 n n C6 N1 AMP doub 78 n y N6 HN61 AMP sing 79 n n N6 HN62 AMP sing 80 n n N1 C2 AMP sing 81 n y C2 N3 AMP doub 82 n y C2 H2 AMP sing 83 n n N3 C4 AMP sing 84 n y # _atom_sites.entry_id 1FPI _atom_sites.fract_transf_matrix[1][1] 0.01634 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 336 1 K K . D 2 K A 1 337 2 K K . E 2 K A 1 338 3 K K . F 3 AMP A 1 339 7 AMP AMP . G 4 AHG A 1 340 9 AHG AHG . H 2 K B 1 336 4 K K . I 2 K B 1 337 5 K K . J 2 K B 1 338 6 K K . K 3 AMP B 1 339 8 AMP AMP . L 4 AHG B 1 340 10 AHG AHG . M 5 HOH A 1 341 3 HOH HOH . M 5 HOH A 2 342 10 HOH HOH . M 5 HOH A 3 343 12 HOH HOH . M 5 HOH A 4 344 14 HOH HOH . M 5 HOH A 5 345 17 HOH HOH . M 5 HOH A 6 346 18 HOH HOH . M 5 HOH A 7 347 19 HOH HOH . M 5 HOH A 8 348 21 HOH HOH . M 5 HOH A 9 349 23 HOH HOH . M 5 HOH A 10 350 24 HOH HOH . M 5 HOH A 11 351 26 HOH HOH . M 5 HOH A 12 352 27 HOH HOH . M 5 HOH A 13 353 30 HOH HOH . M 5 HOH A 14 354 31 HOH HOH . M 5 HOH A 15 355 34 HOH HOH . M 5 HOH A 16 356 35 HOH HOH . M 5 HOH A 17 357 37 HOH HOH . M 5 HOH A 18 358 38 HOH HOH . M 5 HOH A 19 359 40 HOH HOH . M 5 HOH A 20 360 41 HOH HOH . M 5 HOH A 21 361 44 HOH HOH . M 5 HOH A 22 362 45 HOH HOH . M 5 HOH A 23 363 47 HOH HOH . M 5 HOH A 24 364 53 HOH HOH . M 5 HOH A 25 365 54 HOH HOH . M 5 HOH A 26 366 58 HOH HOH . M 5 HOH A 27 367 63 HOH HOH . M 5 HOH A 28 368 67 HOH HOH . M 5 HOH A 29 369 68 HOH HOH . M 5 HOH A 30 370 71 HOH HOH . M 5 HOH A 31 371 74 HOH HOH . M 5 HOH A 32 372 77 HOH HOH . M 5 HOH A 33 373 78 HOH HOH . M 5 HOH A 34 374 79 HOH HOH . M 5 HOH A 35 375 82 HOH HOH . M 5 HOH A 36 376 84 HOH HOH . M 5 HOH A 37 377 85 HOH HOH . M 5 HOH A 38 378 87 HOH HOH . M 5 HOH A 39 379 88 HOH HOH . M 5 HOH A 40 380 89 HOH HOH . M 5 HOH A 41 381 90 HOH HOH . M 5 HOH A 42 382 92 HOH HOH . M 5 HOH A 43 383 96 HOH HOH . M 5 HOH A 44 384 97 HOH HOH . M 5 HOH A 45 385 98 HOH HOH . M 5 HOH A 46 386 99 HOH HOH . M 5 HOH A 47 387 100 HOH HOH . M 5 HOH A 48 388 101 HOH HOH . M 5 HOH A 49 389 102 HOH HOH . M 5 HOH A 50 390 103 HOH HOH . M 5 HOH A 51 391 104 HOH HOH . M 5 HOH A 52 392 105 HOH HOH . M 5 HOH A 53 393 106 HOH HOH . M 5 HOH A 54 394 107 HOH HOH . M 5 HOH A 55 395 108 HOH HOH . M 5 HOH A 56 396 109 HOH HOH . M 5 HOH A 57 397 110 HOH HOH . M 5 HOH A 58 398 111 HOH HOH . N 5 HOH B 1 341 1 HOH HOH . N 5 HOH B 2 342 2 HOH HOH . N 5 HOH B 3 343 4 HOH HOH . N 5 HOH B 4 344 5 HOH HOH . N 5 HOH B 5 345 6 HOH HOH . N 5 HOH B 6 346 7 HOH HOH . N 5 HOH B 7 347 8 HOH HOH . N 5 HOH B 8 348 9 HOH HOH . N 5 HOH B 9 349 11 HOH HOH . N 5 HOH B 10 350 13 HOH HOH . N 5 HOH B 11 351 15 HOH HOH . N 5 HOH B 12 352 16 HOH HOH . N 5 HOH B 13 353 20 HOH HOH . N 5 HOH B 14 354 22 HOH HOH . N 5 HOH B 15 355 25 HOH HOH . N 5 HOH B 16 356 28 HOH HOH . N 5 HOH B 17 357 29 HOH HOH . N 5 HOH B 18 358 32 HOH HOH . N 5 HOH B 19 359 33 HOH HOH . N 5 HOH B 20 360 36 HOH HOH . N 5 HOH B 21 361 39 HOH HOH . N 5 HOH B 22 362 42 HOH HOH . N 5 HOH B 23 363 43 HOH HOH . N 5 HOH B 24 364 46 HOH HOH . N 5 HOH B 25 365 48 HOH HOH . N 5 HOH B 26 366 49 HOH HOH . N 5 HOH B 27 367 50 HOH HOH . N 5 HOH B 28 368 51 HOH HOH . N 5 HOH B 29 369 52 HOH HOH . N 5 HOH B 30 370 55 HOH HOH . N 5 HOH B 31 371 56 HOH HOH . N 5 HOH B 32 372 57 HOH HOH . N 5 HOH B 33 373 59 HOH HOH . N 5 HOH B 34 374 60 HOH HOH . N 5 HOH B 35 375 61 HOH HOH . N 5 HOH B 36 376 62 HOH HOH . N 5 HOH B 37 377 64 HOH HOH . N 5 HOH B 38 378 65 HOH HOH . N 5 HOH B 39 379 66 HOH HOH . N 5 HOH B 40 380 69 HOH HOH . N 5 HOH B 41 381 70 HOH HOH . N 5 HOH B 42 382 72 HOH HOH . N 5 HOH B 43 383 73 HOH HOH . N 5 HOH B 44 384 75 HOH HOH . N 5 HOH B 45 385 76 HOH HOH . N 5 HOH B 46 386 80 HOH HOH . N 5 HOH B 47 387 81 HOH HOH . N 5 HOH B 48 388 83 HOH HOH . N 5 HOH B 49 389 86 HOH HOH . N 5 HOH B 50 390 91 HOH HOH . N 5 HOH B 51 391 93 HOH HOH . N 5 HOH B 52 392 94 HOH HOH . N 5 HOH B 53 393 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . F 3 35.862 90.957 -13.288 1 25.24 ? P AMP 339 A 1 HETATM 2 O O1P AMP . . . F 3 37.23 91.458 -12.947 1 17.22 ? O1P AMP 339 A 1 HETATM 3 O O2P AMP . . . F 3 35.404 90.087 -12.157 1 25.31 ? O2P AMP 339 A 1 HETATM 4 O O3P AMP . . . F 3 35.759 90.136 -14.564 1 26.24 ? O3P AMP 339 A 1 HETATM 5 O O5' AMP . . . F 3 34.836 92.082 -13.363 1 23.61 ? O5' AMP 339 A 1 HETATM 6 C C5' AMP . . . F 3 35.121 93.119 -14.352 1 23.11 ? C5' AMP 339 A 1 HETATM 7 C C4' AMP . . . F 3 34.107 94.245 -14.129 1 23.93 ? C4' AMP 339 A 1 HETATM 8 O O4' AMP . . . F 3 32.775 93.738 -13.949 1 22.86 ? O4' AMP 339 A 1 HETATM 9 C C3' AMP . . . F 3 34.333 94.939 -12.752 1 24.46 ? C3' AMP 339 A 1 HETATM 10 O O3' AMP . . . F 3 35.37 95.707 -12.689 1 28 ? O3' AMP 339 A 1 HETATM 11 C C2' AMP . . . F 3 32.997 95.637 -12.489 1 25.11 ? C2' AMP 339 A 1 HETATM 12 O O2' AMP . . . F 3 32.711 96.441 -13.502 1 27.67 ? O2' AMP 339 A 1 HETATM 13 C C1' AMP . . . F 3 32.305 94.279 -12.69 1 25.5 ? C1' AMP 339 A 1 HETATM 14 N N9 AMP . . . F 3 32.087 93.333 -11.574 1 28.18 ? N9 AMP 339 A 1 HETATM 15 C C8 AMP . . . F 3 32.811 92.195 -11.36 1 27.79 ? C8 AMP 339 A 1 HETATM 16 N N7 AMP . . . F 3 32.323 91.659 -10.212 1 26.08 ? N7 AMP 339 A 1 HETATM 17 C C5 AMP . . . F 3 31.306 92.409 -9.682 1 27.08 ? C5 AMP 339 A 1 HETATM 18 C C6 AMP . . . F 3 30.499 92.356 -8.582 1 28.77 ? C6 AMP 339 A 1 HETATM 19 N N6 AMP . . . F 3 30.61 91.42 -7.607 1 24.87 ? N6 AMP 339 A 1 HETATM 20 N N1 AMP . . . F 3 29.616 93.326 -8.408 1 31.12 ? N1 AMP 339 A 1 HETATM 21 C C2 AMP . . . F 3 29.46 94.356 -9.223 1 32.18 ? C2 AMP 339 A 1 HETATM 22 N N3 AMP . . . F 3 30.233 94.475 -10.322 1 30.47 ? N3 AMP 339 A 1 HETATM 23 C C4 AMP . . . F 3 31.144 93.487 -10.537 1 26.61 ? C4 AMP 339 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #