data_1FPI # _model_server_result.job_id He2wfrOylefxGbK3PHqi_g _model_server_result.datetime_utc '2024-10-20 19:45:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fpi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":340}' # _entry.id 1FPI # _exptl.entry_id 1FPI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 324.116 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,5-anhydro-1,6-di-O-phosphono-D-glucitol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FPI _cell.length_a 61.2 _cell.length_b 167.1 _cell.length_c 80 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FPI _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 61.2 167.1 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 97 A GLU 97 1_555 C K K . A K 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc2 A OE1 GLU 97 A GLU 97 1_555 D K K . A K 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc3 A OE2 GLU 97 A GLU 97 1_555 D K K . A K 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? metalc ? metalc4 A OE2 GLU 98 A GLU 98 1_555 C K K . A K 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc5 A OD1 ASP 118 A ASP 118 1_555 C K K . A K 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.053 ? metalc ? metalc6 A OD2 ASP 118 A ASP 118 1_555 D K K . A K 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc7 A O LEU 120 A LEU 120 1_555 C K K . A K 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc8 A OD1 ASP 121 A ASP 121 1_555 D K K . A K 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc9 A OG SER 123 A SER 123 1_555 C K K . A K 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.398 ? metalc ? metalc10 A NH1 ARG 276 A ARG 276 1_555 E K K . A K 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.324 ? metalc ? metalc11 A OE2 GLU 280 A GLU 280 1_555 D K K . A K 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? metalc ? metalc12 A OE1 GLU 280 A GLU 280 1_555 E K K . A K 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.224 ? metalc ? metalc13 A OE2 GLU 280 A GLU 280 1_555 E K K . A K 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.255 ? metalc ? metalc14 D K K . A K 337 1_555 E K K . A K 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.346 ? metalc ? metalc15 D K K . A K 337 1_555 G O3P AHG . A AHG 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc16 D K K . A K 337 1_555 G O2P AHG . A AHG 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.299 ? metalc ? metalc17 B OE1 GLU 97 B GLU 97 1_555 H K K . B K 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc18 B OE2 GLU 97 B GLU 97 1_555 H K K . B K 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc19 B OE2 GLU 97 B GLU 97 1_555 I K K . B K 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.2 ? metalc ? metalc20 B OE2 GLU 98 B GLU 98 1_555 I K K . B K 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.065 ? metalc ? metalc21 B OD2 ASP 118 B ASP 118 1_555 H K K . B K 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc22 B OD1 ASP 118 B ASP 118 1_555 I K K . B K 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc23 B O LEU 120 B LEU 120 1_555 I K K . B K 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc24 B OD1 ASP 121 B ASP 121 1_555 H K K . B K 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc25 B NH1 ARG 276 B ARG 276 1_555 J K K . B K 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.024 ? metalc ? metalc26 B OE2 GLU 280 B GLU 280 1_555 H K K . B K 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc27 B OE1 GLU 280 B GLU 280 1_555 J K K . B K 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.26 ? metalc ? metalc28 B OE2 GLU 280 B GLU 280 1_555 J K K . B K 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.06 ? metalc ? metalc29 H K K . B K 336 1_555 J K K . B K 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.455 ? metalc ? metalc30 H K K . B K 336 1_555 L O3P AHG . B AHG 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.563 ? metalc ? metalc31 H K K . B K 336 1_555 L O1P AHG . B AHG 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? # _chem_comp.formula 'C6 H14 O11 P2' _chem_comp.formula_weight 324.116 _chem_comp.id AHG _chem_comp.mon_nstd_flag . _chem_comp.name 2,5-anhydro-1,6-di-O-phosphono-D-glucitol _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 2,5-ANHYDROGLUCITOL-1,6-BIPHOSPHATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P AHG doub 1 n n P1 O2P AHG sing 2 n n P1 O3P AHG sing 3 n n P1 O1 AHG sing 4 n n O2P HOP2 AHG sing 5 n n O3P HOP3 AHG sing 6 n n O1 C1 AHG sing 7 n n C1 C2 AHG sing 8 n n C1 H11 AHG sing 9 n n C1 H12 AHG sing 10 n n C2 C3 AHG sing 11 n n C2 O5 AHG sing 12 n n C2 H2 AHG sing 13 n n C3 O3 AHG sing 14 n n C3 C4 AHG sing 15 n n C3 H3 AHG sing 16 n n O3 HO3 AHG sing 17 n n C4 O4 AHG sing 18 n n C4 C5 AHG sing 19 n n C4 H4 AHG sing 20 n n O4 HO4 AHG sing 21 n n C5 O5 AHG sing 22 n n C5 C6 AHG sing 23 n n C5 H5 AHG sing 24 n n C6 O6 AHG sing 25 n n C6 H61 AHG sing 26 n n C6 H62 AHG sing 27 n n O6 P2 AHG sing 28 n n P2 O4P AHG doub 29 n n P2 O5P AHG sing 30 n n P2 O6P AHG sing 31 n n O5P HOP5 AHG sing 32 n n O6P HOP6 AHG sing 33 n n # _atom_sites.entry_id 1FPI _atom_sites.fract_transf_matrix[1][1] 0.01634 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 336 1 K K . D 2 K A 1 337 2 K K . E 2 K A 1 338 3 K K . F 3 AMP A 1 339 7 AMP AMP . G 4 AHG A 1 340 9 AHG AHG . H 2 K B 1 336 4 K K . I 2 K B 1 337 5 K K . J 2 K B 1 338 6 K K . K 3 AMP B 1 339 8 AMP AMP . L 4 AHG B 1 340 10 AHG AHG . M 5 HOH A 1 341 3 HOH HOH . M 5 HOH A 2 342 10 HOH HOH . M 5 HOH A 3 343 12 HOH HOH . M 5 HOH A 4 344 14 HOH HOH . M 5 HOH A 5 345 17 HOH HOH . M 5 HOH A 6 346 18 HOH HOH . M 5 HOH A 7 347 19 HOH HOH . M 5 HOH A 8 348 21 HOH HOH . M 5 HOH A 9 349 23 HOH HOH . M 5 HOH A 10 350 24 HOH HOH . M 5 HOH A 11 351 26 HOH HOH . M 5 HOH A 12 352 27 HOH HOH . M 5 HOH A 13 353 30 HOH HOH . M 5 HOH A 14 354 31 HOH HOH . M 5 HOH A 15 355 34 HOH HOH . M 5 HOH A 16 356 35 HOH HOH . M 5 HOH A 17 357 37 HOH HOH . M 5 HOH A 18 358 38 HOH HOH . M 5 HOH A 19 359 40 HOH HOH . M 5 HOH A 20 360 41 HOH HOH . M 5 HOH A 21 361 44 HOH HOH . M 5 HOH A 22 362 45 HOH HOH . M 5 HOH A 23 363 47 HOH HOH . M 5 HOH A 24 364 53 HOH HOH . M 5 HOH A 25 365 54 HOH HOH . M 5 HOH A 26 366 58 HOH HOH . M 5 HOH A 27 367 63 HOH HOH . M 5 HOH A 28 368 67 HOH HOH . M 5 HOH A 29 369 68 HOH HOH . M 5 HOH A 30 370 71 HOH HOH . M 5 HOH A 31 371 74 HOH HOH . M 5 HOH A 32 372 77 HOH HOH . M 5 HOH A 33 373 78 HOH HOH . M 5 HOH A 34 374 79 HOH HOH . M 5 HOH A 35 375 82 HOH HOH . M 5 HOH A 36 376 84 HOH HOH . M 5 HOH A 37 377 85 HOH HOH . M 5 HOH A 38 378 87 HOH HOH . M 5 HOH A 39 379 88 HOH HOH . M 5 HOH A 40 380 89 HOH HOH . M 5 HOH A 41 381 90 HOH HOH . M 5 HOH A 42 382 92 HOH HOH . M 5 HOH A 43 383 96 HOH HOH . M 5 HOH A 44 384 97 HOH HOH . M 5 HOH A 45 385 98 HOH HOH . M 5 HOH A 46 386 99 HOH HOH . M 5 HOH A 47 387 100 HOH HOH . M 5 HOH A 48 388 101 HOH HOH . M 5 HOH A 49 389 102 HOH HOH . M 5 HOH A 50 390 103 HOH HOH . M 5 HOH A 51 391 104 HOH HOH . M 5 HOH A 52 392 105 HOH HOH . M 5 HOH A 53 393 106 HOH HOH . M 5 HOH A 54 394 107 HOH HOH . M 5 HOH A 55 395 108 HOH HOH . M 5 HOH A 56 396 109 HOH HOH . M 5 HOH A 57 397 110 HOH HOH . M 5 HOH A 58 398 111 HOH HOH . N 5 HOH B 1 341 1 HOH HOH . N 5 HOH B 2 342 2 HOH HOH . N 5 HOH B 3 343 4 HOH HOH . N 5 HOH B 4 344 5 HOH HOH . N 5 HOH B 5 345 6 HOH HOH . N 5 HOH B 6 346 7 HOH HOH . N 5 HOH B 7 347 8 HOH HOH . N 5 HOH B 8 348 9 HOH HOH . N 5 HOH B 9 349 11 HOH HOH . N 5 HOH B 10 350 13 HOH HOH . N 5 HOH B 11 351 15 HOH HOH . N 5 HOH B 12 352 16 HOH HOH . N 5 HOH B 13 353 20 HOH HOH . N 5 HOH B 14 354 22 HOH HOH . N 5 HOH B 15 355 25 HOH HOH . N 5 HOH B 16 356 28 HOH HOH . N 5 HOH B 17 357 29 HOH HOH . N 5 HOH B 18 358 32 HOH HOH . N 5 HOH B 19 359 33 HOH HOH . N 5 HOH B 20 360 36 HOH HOH . N 5 HOH B 21 361 39 HOH HOH . N 5 HOH B 22 362 42 HOH HOH . N 5 HOH B 23 363 43 HOH HOH . N 5 HOH B 24 364 46 HOH HOH . N 5 HOH B 25 365 48 HOH HOH . N 5 HOH B 26 366 49 HOH HOH . N 5 HOH B 27 367 50 HOH HOH . N 5 HOH B 28 368 51 HOH HOH . N 5 HOH B 29 369 52 HOH HOH . N 5 HOH B 30 370 55 HOH HOH . N 5 HOH B 31 371 56 HOH HOH . N 5 HOH B 32 372 57 HOH HOH . N 5 HOH B 33 373 59 HOH HOH . N 5 HOH B 34 374 60 HOH HOH . N 5 HOH B 35 375 61 HOH HOH . N 5 HOH B 36 376 62 HOH HOH . N 5 HOH B 37 377 64 HOH HOH . N 5 HOH B 38 378 65 HOH HOH . N 5 HOH B 39 379 66 HOH HOH . N 5 HOH B 40 380 69 HOH HOH . N 5 HOH B 41 381 70 HOH HOH . N 5 HOH B 42 382 72 HOH HOH . N 5 HOH B 43 383 73 HOH HOH . N 5 HOH B 44 384 75 HOH HOH . N 5 HOH B 45 385 76 HOH HOH . N 5 HOH B 46 386 80 HOH HOH . N 5 HOH B 47 387 81 HOH HOH . N 5 HOH B 48 388 83 HOH HOH . N 5 HOH B 49 389 86 HOH HOH . N 5 HOH B 50 390 91 HOH HOH . N 5 HOH B 51 391 93 HOH HOH . N 5 HOH B 52 392 94 HOH HOH . N 5 HOH B 53 393 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 AHG . . . G 4 45.129 107.537 13.227 1 48.2 ? P1 AHG 340 A 1 HETATM 2 O O1P AHG . . . G 4 45.385 107.414 14.692 1 44.24 ? O1P AHG 340 A 1 HETATM 3 O O2P AHG . . . G 4 46.444 107.739 12.562 1 47.11 ? O2P AHG 340 A 1 HETATM 4 O O3P AHG . . . G 4 44.467 106.315 12.694 1 47.59 ? O3P AHG 340 A 1 HETATM 5 O O1 AHG . . . G 4 44.248 108.767 12.971 1 41.6 ? O1 AHG 340 A 1 HETATM 6 C C1 AHG . . . G 4 42.884 108.597 12.749 1 31.56 ? C1 AHG 340 A 1 HETATM 7 C C2 AHG . . . G 4 42.373 109.901 12.151 1 28.14 ? C2 AHG 340 A 1 HETATM 8 C C3 AHG . . . G 4 40.889 109.942 11.902 1 27.68 ? C3 AHG 340 A 1 HETATM 9 O O3 AHG . . . G 4 40.381 108.685 12.348 1 24.06 ? O3 AHG 340 A 1 HETATM 10 C C4 AHG . . . G 4 40.398 111.087 12.71 1 26.4 ? C4 AHG 340 A 1 HETATM 11 O O4 AHG . . . G 4 39.488 111.925 12.005 1 28.17 ? O4 AHG 340 A 1 HETATM 12 C C5 AHG . . . G 4 41.627 111.908 13.015 1 26.21 ? C5 AHG 340 A 1 HETATM 13 O O5 AHG . . . G 4 42.626 110.919 13.093 1 29.63 ? O5 AHG 340 A 1 HETATM 14 C C6 AHG . . . G 4 41.496 112.815 14.252 1 25.3 ? C6 AHG 340 A 1 HETATM 15 O O6 AHG . . . G 4 42.722 113.515 14.462 1 28.21 ? O6 AHG 340 A 1 HETATM 16 P P2 AHG . . . G 4 42.762 114.773 15.438 1 24.43 ? P2 AHG 340 A 1 HETATM 17 O O4P AHG . . . G 4 43.005 114.258 16.82 1 26.85 ? O4P AHG 340 A 1 HETATM 18 O O5P AHG . . . G 4 43.791 115.735 14.966 1 25.88 ? O5P AHG 340 A 1 HETATM 19 O O6P AHG . . . G 4 41.462 115.477 15.388 1 21.03 ? O6P AHG 340 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #