data_1FPP # _model_server_result.job_id iCVYWIcL4KcVwEbmrzrSJA _model_server_result.datetime_utc '2024-12-07 14:53:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fpp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":440}' # _entry.id 1FPP # _exptl.entry_id 1FPP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 382.326 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FARNESYL DIPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1FPP _cell.length_a 170 _cell.length_b 170 _cell.length_c 68.86 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FPP _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A CG ASP 297 B ASP 297 1_555 C ZN ZN . B ZN 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc2 A OD1 ASP 297 B ASP 297 1_555 C ZN ZN . B ZN 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc3 A OD2 ASP 297 B ASP 297 1_555 C ZN ZN . B ZN 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc4 A SG CYS 299 B CYS 299 1_555 C ZN ZN . B ZN 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc5 A NE2 HIS 362 B HIS 362 1_555 C ZN ZN . B ZN 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? # _chem_comp.formula 'C15 H28 O7 P2' _chem_comp.formula_weight 382.326 _chem_comp.id FPP _chem_comp.mon_nstd_flag . _chem_comp.name 'FARNESYL DIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 FPP sing 83 n n C1 C2 FPP sing 84 n n C1 H11 FPP sing 85 n n C1 H12A FPP sing 86 n n O1 PA FPP sing 87 n n C2 C3 FPP doub 88 e n C2 H2 FPP sing 89 n n C3 C4 FPP sing 90 n n C3 C5 FPP sing 91 n n C4 H41 FPP sing 92 n n C4 H42 FPP sing 93 n n C4 H43 FPP sing 94 n n C5 C6 FPP sing 95 n n C5 H51 FPP sing 96 n n C5 H52 FPP sing 97 n n C6 C7 FPP sing 98 n n C6 H61 FPP sing 99 n n C6 H62 FPP sing 100 n n C7 C8 FPP doub 101 e n C7 H7 FPP sing 102 n n C8 C10 FPP sing 103 n n C8 C9 FPP sing 104 n n C10 H101 FPP sing 105 n n C10 H102 FPP sing 106 n n C10 H103 FPP sing 107 n n C9 C11 FPP sing 108 n n C9 H91 FPP sing 109 n n C9 H92 FPP sing 110 n n C11 C12 FPP sing 111 n n C11 H111 FPP sing 112 n n C11 H112 FPP sing 113 n n C12 C13 FPP doub 114 n n C12 H12 FPP sing 115 n n C13 C14 FPP sing 116 n n C13 C15 FPP sing 117 n n C14 H141 FPP sing 118 n n C14 H142 FPP sing 119 n n C14 H143 FPP sing 120 n n C15 H151 FPP sing 121 n n C15 H152 FPP sing 122 n n C15 H153 FPP sing 123 n n PA O1A FPP doub 124 n n PA O2A FPP sing 125 n n PA O3A FPP sing 126 n n O2A HOA2 FPP sing 127 n n O3A PB FPP sing 128 n n PB O1B FPP doub 129 n n PB O2B FPP sing 130 n n PB O3B FPP sing 131 n n O2B HOB2 FPP sing 132 n n O3B HOB3 FPP sing 133 n n # _atom_sites.entry_id 1FPP _atom_sites.fract_transf_matrix[1][1] 0.005882 _atom_sites.fract_transf_matrix[1][2] 0.003396 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014522 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN B 1 438 422 ZN ZN . D 4 PO4 B 1 439 2 PO4 PO4 . E 5 FPP B 1 440 1 FPP FPP . F 6 HOH B 1 441 3 HOH HOH . F 6 HOH B 2 442 4 HOH HOH . F 6 HOH B 3 443 5 HOH HOH . F 6 HOH B 4 444 10 HOH HOH . F 6 HOH B 5 445 11 HOH HOH . F 6 HOH B 6 446 13 HOH HOH . F 6 HOH B 7 447 14 HOH HOH . F 6 HOH B 8 448 15 HOH HOH . F 6 HOH B 9 449 16 HOH HOH . G 6 HOH A 1 378 1 HOH HOH . G 6 HOH A 2 379 2 HOH HOH . G 6 HOH A 3 380 6 HOH HOH . G 6 HOH A 4 381 7 HOH HOH . G 6 HOH A 5 382 8 HOH HOH . G 6 HOH A 6 383 9 HOH HOH . G 6 HOH A 7 384 12 HOH HOH . G 6 HOH A 8 385 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FPP . . . E 5 -32.564 98.122 23.165 1 53.39 ? C1 FPP 440 B 1 HETATM 2 O O1 FPP . . . E 5 -33.369 97.457 24.155 1 64.59 ? O1 FPP 440 B 1 HETATM 3 C C2 FPP . . . E 5 -32.946 99.549 22.828 1 47.49 ? C2 FPP 440 B 1 HETATM 4 C C3 FPP . . . E 5 -32.063 100.572 22.739 1 39.64 ? C3 FPP 440 B 1 HETATM 5 C C4 FPP . . . E 5 -32.503 102.003 22.383 1 44.6 ? C4 FPP 440 B 1 HETATM 6 C C5 FPP . . . E 5 -30.613 100.266 22.999 1 29.2 ? C5 FPP 440 B 1 HETATM 7 C C6 FPP . . . E 5 -29.791 101.527 23.36 1 44.81 ? C6 FPP 440 B 1 HETATM 8 C C7 FPP . . . E 5 -28.257 101.371 23.286 1 54.72 ? C7 FPP 440 B 1 HETATM 9 C C8 FPP . . . E 5 -27.421 101.505 22.213 1 64.31 ? C8 FPP 440 B 1 HETATM 10 C C10 FPP . . . E 5 -27.956 101.867 20.804 1 66.27 ? C10 FPP 440 B 1 HETATM 11 C C9 FPP . . . E 5 -25.914 101.286 22.421 1 61.27 ? C9 FPP 440 B 1 HETATM 12 C C11 FPP . . . E 5 -25.486 99.831 22.734 1 59.9 ? C11 FPP 440 B 1 HETATM 13 C C12 FPP . . . E 5 -25.444 98.873 21.541 1 62.16 ? C12 FPP 440 B 1 HETATM 14 C C13 FPP . . . E 5 -24.683 97.745 21.357 1 65.27 ? C13 FPP 440 B 1 HETATM 15 C C14 FPP . . . E 5 -24.72 96.861 20.128 1 68.95 ? C14 FPP 440 B 1 HETATM 16 C C15 FPP . . . E 5 -23.691 97.217 22.371 1 62.65 ? C15 FPP 440 B 1 HETATM 17 P PA FPP . . . E 5 -34.151 96.061 23.801 1 75.54 ? PA FPP 440 B 1 HETATM 18 O O1A FPP . . . E 5 -33.091 94.896 23.841 1 78.65 ? O1A FPP 440 B 1 HETATM 19 O O2A FPP . . . E 5 -35.297 96.152 24.815 1 72.05 ? O2A FPP 440 B 1 HETATM 20 O O3A FPP . . . E 5 -34.78 95.733 22.443 1 74.73 ? O3A FPP 440 B 1 HETATM 21 P PB FPP . . . E 5 -35.132 96.883 21.483 1 77.51 ? PB FPP 440 B 1 HETATM 22 O O1B FPP . . . E 5 -35.816 98.123 22 1 81.6 ? O1B FPP 440 B 1 HETATM 23 O O2B FPP . . . E 5 -35.911 96.295 20.345 1 87.46 ? O2B FPP 440 B 1 HETATM 24 O O3B FPP . . . E 5 -33.89 97.58 20.844 1 74.03 ? O3B FPP 440 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #