data_1FQ4 # _model_server_result.job_id t1PmDGBsYpDUPdDlGGc66g _model_server_result.datetime_utc '2025-04-02 15:43:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fq4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":337}' # _entry.id 1FQ4 # _exptl.entry_id 1FQ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1FQ4 _cell.length_a 86.91 _cell.length_b 86.91 _cell.length_c 110.22 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FQ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 73.48 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 BMA BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 4 BGC BMA C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 332 NAG 2 n B NAG 2 B 2 NAG A 333 NAG 2 n B BMA 3 B 3 BMA A 334 BMA 2 n B BMA 4 B 4 BMA A 335 BMA 2 n B BGC 5 B 5 BGC A 336 BGC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 46 A CYS 45 1_555 A SG CYS 51 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf2 A SG CYS 252 A CYS 249 1_555 A SG CYS 285 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? covale ? covale1 A ND2 ASN 68 A ASN 67 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? covale ? covale2 A ND2 ASN 269 A ASN 266 1_555 D C1 NAG . A NAG 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale4 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale5 B O3 BMA . B BMA 3 1_555 B C1 BMA . B BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale6 B O2 BMA . B BMA 4 1_555 B C1 BGC . B BGC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 381 n n C1 O1 NAG sing 382 n n C1 O5 NAG sing 383 n n C1 H1 NAG sing 384 n n C2 C3 NAG sing 385 n n C2 N2 NAG sing 386 n n C2 H2 NAG sing 387 n n C3 C4 NAG sing 388 n n C3 O3 NAG sing 389 n n C3 H3 NAG sing 390 n n C4 C5 NAG sing 391 n n C4 O4 NAG sing 392 n n C4 H4 NAG sing 393 n n C5 C6 NAG sing 394 n n C5 O5 NAG sing 395 n n C5 H5 NAG sing 396 n n C6 O6 NAG sing 397 n n C6 H61 NAG sing 398 n n C6 H62 NAG sing 399 n n C7 C8 NAG sing 400 n n C7 N2 NAG sing 401 n n C7 O7 NAG doub 402 n n C8 H81 NAG sing 403 n n C8 H82 NAG sing 404 n n C8 H83 NAG sing 405 n n N2 HN2 NAG sing 406 n n O1 HO1 NAG sing 407 n n O3 HO3 NAG sing 408 n n O4 HO4 NAG sing 409 n n O6 HO6 NAG sing 410 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1FQ4 _atom_sites.fract_transf_matrix[1][1] 0.011506 _atom_sites.fract_transf_matrix[1][2] 0.006643 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013286 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009073 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 2Y2 A 1 338 338 2Y2 2Y2 . D 4 NAG A 1 337 337 NAG NDG . E 5 HOH A 1 501 501 HOH HOH . E 5 HOH A 2 502 502 HOH HOH . E 5 HOH A 3 505 505 HOH HOH . E 5 HOH A 4 510 510 HOH HOH . E 5 HOH A 5 512 512 HOH HOH . E 5 HOH A 6 514 514 HOH HOH . E 5 HOH A 7 515 515 HOH HOH . E 5 HOH A 8 517 517 HOH HOH . E 5 HOH A 9 522 522 HOH HOH . E 5 HOH A 10 524 524 HOH HOH . E 5 HOH A 11 525 525 HOH HOH . E 5 HOH A 12 529 529 HOH HOH . E 5 HOH A 13 532 532 HOH HOH . E 5 HOH A 14 534 534 HOH HOH . E 5 HOH A 15 535 535 HOH HOH . E 5 HOH A 16 537 537 HOH HOH . E 5 HOH A 17 538 538 HOH HOH . E 5 HOH A 18 539 539 HOH HOH . E 5 HOH A 19 540 540 HOH HOH . E 5 HOH A 20 543 543 HOH HOH . E 5 HOH A 21 544 544 HOH HOH . E 5 HOH A 22 546 546 HOH HOH . E 5 HOH A 23 547 547 HOH HOH . E 5 HOH A 24 549 549 HOH HOH . E 5 HOH A 25 553 553 HOH HOH . E 5 HOH A 26 555 555 HOH HOH . E 5 HOH A 27 557 557 HOH HOH . E 5 HOH A 28 558 558 HOH HOH . E 5 HOH A 29 559 559 HOH HOH . E 5 HOH A 30 561 561 HOH HOH . E 5 HOH A 31 562 562 HOH HOH . E 5 HOH A 32 566 566 HOH HOH . E 5 HOH A 33 567 567 HOH HOH . E 5 HOH A 34 572 572 HOH HOH . E 5 HOH A 35 573 573 HOH HOH . E 5 HOH A 36 574 574 HOH HOH . E 5 HOH A 37 576 576 HOH HOH . E 5 HOH A 38 577 577 HOH HOH . E 5 HOH A 39 578 578 HOH HOH . E 5 HOH A 40 579 579 HOH HOH . E 5 HOH A 41 580 580 HOH HOH . E 5 HOH A 42 581 581 HOH HOH . E 5 HOH A 43 582 582 HOH HOH . E 5 HOH A 44 583 583 HOH HOH . E 5 HOH A 45 602 602 HOH HOH . E 5 HOH A 46 605 605 HOH HOH . E 5 HOH A 47 606 606 HOH HOH . E 5 HOH A 48 616 616 HOH HOH . E 5 HOH A 49 617 617 HOH HOH . E 5 HOH A 50 619 619 HOH HOH . E 5 HOH A 51 621 621 HOH HOH . E 5 HOH A 52 622 622 HOH HOH . E 5 HOH A 53 626 626 HOH HOH . E 5 HOH A 54 629 629 HOH HOH . E 5 HOH A 55 631 631 HOH HOH . E 5 HOH A 56 632 632 HOH HOH . E 5 HOH A 57 633 633 HOH HOH . E 5 HOH A 58 634 634 HOH HOH . E 5 HOH A 59 639 639 HOH HOH . E 5 HOH A 60 640 640 HOH HOH . E 5 HOH A 61 642 642 HOH HOH . E 5 HOH A 62 644 644 HOH HOH . E 5 HOH A 63 645 645 HOH HOH . E 5 HOH A 64 648 648 HOH HOH . E 5 HOH A 65 650 650 HOH HOH . E 5 HOH A 66 653 653 HOH HOH . E 5 HOH A 67 655 655 HOH HOH . E 5 HOH A 68 656 656 HOH HOH . E 5 HOH A 69 657 657 HOH HOH . E 5 HOH A 70 660 660 HOH HOH . E 5 HOH A 71 661 661 HOH HOH . E 5 HOH A 72 662 662 HOH HOH . E 5 HOH A 73 663 663 HOH HOH . E 5 HOH A 74 664 664 HOH HOH . E 5 HOH A 75 665 665 HOH HOH . E 5 HOH A 76 666 666 HOH HOH . E 5 HOH A 77 667 667 HOH HOH . E 5 HOH A 78 669 669 HOH HOH . E 5 HOH A 79 673 673 HOH HOH . E 5 HOH A 80 675 675 HOH HOH . E 5 HOH A 81 676 676 HOH HOH . E 5 HOH A 82 677 677 HOH HOH . E 5 HOH A 83 679 679 HOH HOH . E 5 HOH A 84 680 680 HOH HOH . E 5 HOH A 85 681 681 HOH HOH . E 5 HOH A 86 683 683 HOH HOH . E 5 HOH A 87 686 686 HOH HOH . E 5 HOH A 88 694 694 HOH HOH . E 5 HOH A 89 695 695 HOH HOH . E 5 HOH A 90 696 696 HOH HOH . E 5 HOH A 91 697 697 HOH HOH . E 5 HOH A 92 698 698 HOH HOH . E 5 HOH A 93 699 699 HOH HOH . E 5 HOH A 94 700 700 HOH HOH . E 5 HOH A 95 701 701 HOH HOH . E 5 HOH A 96 702 702 HOH HOH . E 5 HOH A 97 703 703 HOH HOH . E 5 HOH A 98 704 704 HOH HOH . E 5 HOH A 99 707 707 HOH HOH . E 5 HOH A 100 708 708 HOH HOH . E 5 HOH A 101 709 709 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 5.284 64.225 21.698 1 151.06 ? C1 NAG 337 A 1 HETATM 2 C C2 NAG . . . D 4 6.121 65.074 20.729 1 139.8 ? C2 NAG 337 A 1 HETATM 3 C C3 NAG . . . D 4 5.255 66.135 20.042 1 43.22 ? C3 NAG 337 A 1 HETATM 4 C C4 NAG . . . D 4 4.289 65.427 19.065 1 136.32 ? C4 NAG 337 A 1 HETATM 5 C C5 NAG . . . D 4 3.743 64.187 19.801 1 56.18 ? C5 NAG 337 A 1 HETATM 6 C C6 NAG . . . D 4 3.2 63.11 18.854 1 96.7 ? C6 NAG 337 A 1 HETATM 7 C C7 NAG . . . D 4 8.036 64.916 22.246 1 158.81 ? C7 NAG 337 A 1 HETATM 8 C C8 NAG . . . D 4 8.382 65.567 23.571 1 55.45 ? C8 NAG 337 A 1 HETATM 9 N N2 NAG . . . D 4 7.215 65.722 21.467 1 37.04 ? N2 NAG 337 A 1 HETATM 10 O O3 NAG . . . D 4 6.115 66.927 19.163 1 59.79 ? O3 NAG 337 A 1 HETATM 11 O O4 NAG . . . D 4 3.147 66.312 18.825 1 32.59 ? O4 NAG 337 A 1 HETATM 12 O O5 NAG . . . D 4 4.491 63.38 20.789 1 98.33 ? O5 NAG 337 A 1 HETATM 13 O O6 NAG . . . D 4 3.245 61.924 19.604 1 59.18 ? O6 NAG 337 A 1 HETATM 14 O O7 NAG . . . D 4 8.451 63.805 21.939 1 40.06 ? O7 NAG 337 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #