data_1FR8
#
_model_server_result.job_id            8guN06ubCyCCu0B_uW0lYA 
_model_server_result.datetime_utc      '2024-11-13 04:16:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1fr8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    1FR8 
#
_exptl.entry_id    1FR8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              566.302 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GALACTOSE-URIDINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1FR8 
_cell.length_a            104.72 
_cell.length_b            161.37 
_cell.length_c            106.31 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1FR8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 20 A CYS 134 1_555 A SG CYS 62 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf2 A SG CYS 133 A CYS 247 1_555 A SG CYS 152 A CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf3 B SG CYS 20 B CYS 134 1_555 B SG CYS 62 B CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf4 B SG CYS 133 B CYS 247 1_555 B SG CYS 152 B CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C15 H24 N2 O17 P2' 
_chem_comp.formula_weight    566.302 
_chem_comp.id                GDU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GALACTOSE-URIDINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     UDP-D-GALACTOPYRANOSE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 GDU sing 83 n n 
N1 C6 GDU sing 84 n n 
N1 C1D GDU sing 85 n n 
C2 N3 GDU sing 86 n n 
C2 O2 GDU doub 87 n n 
N3 C4 GDU sing 88 n n 
N3 HN3 GDU sing 89 n n 
C4 C5 GDU sing 90 n n 
C4 O4 GDU doub 91 n n 
C5 C6 GDU doub 92 n n 
C5 H5 GDU sing 93 n n 
C6 H6 GDU sing 94 n n 
C1D C2D GDU sing 95 n n 
C1D O4D GDU sing 96 n n 
C1D H1D GDU sing 97 n n 
C2D O2D GDU sing 98 n n 
C2D C3D GDU sing 99 n n 
C2D H2D GDU sing 100 n n 
O2D HO2' GDU sing 101 n n 
C3D C4D GDU sing 102 n n 
C3D O3D GDU sing 103 n n 
C3D H3D GDU sing 104 n n 
C4D O4D GDU sing 105 n n 
C4D C5D GDU sing 106 n n 
C4D H4D GDU sing 107 n n 
O3D HO3' GDU sing 108 n n 
C5D O5D GDU sing 109 n n 
C5D "H5'1" GDU sing 110 n n 
C5D "H5'2" GDU sing 111 n n 
O5D PA GDU sing 112 n n 
PA O1A GDU doub 113 n n 
PA O2A GDU sing 114 n n 
PA O3A GDU sing 115 n n 
O2A HOA2 GDU sing 116 n n 
O3A PB GDU sing 117 n n 
PB O1B GDU doub 118 n n 
PB O2B GDU sing 119 n n 
PB O3B GDU sing 120 n n 
O2B HOB2 GDU sing 121 n n 
O3B C1' GDU sing 122 n n 
C1' C2' GDU sing 123 n n 
C1' O5' GDU sing 124 n n 
C1' H1' GDU sing 125 n n 
C2' C3' GDU sing 126 n n 
C2' O2' GDU sing 127 n n 
C2' H2' GDU sing 128 n n 
C3' C4' GDU sing 129 n n 
C3' O3' GDU sing 130 n n 
C3' H3' GDU sing 131 n n 
C4' C5' GDU sing 132 n n 
C4' O4' GDU sing 133 n n 
C4' H4' GDU sing 134 n n 
C5' C6' GDU sing 135 n n 
C5' O5' GDU sing 136 n n 
C5' H5' GDU sing 137 n n 
C6' O6' GDU sing 138 n n 
C6' "H6'1" GDU sing 139 n n 
C6' "H6'2" GDU sing 140 n n 
O2' HO2A GDU sing 141 n n 
O3' HO3A GDU sing 142 n n 
O4' HO4' GDU sing 143 n n 
O6' HO6' GDU sing 144 n n 
#
_atom_sites.entry_id                     1FR8 
_atom_sites.fract_transf_matrix[1][1]    0.009549 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006197 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009406 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GDU A 1 100 100 GDU GDU . 
D 2 GDU B 1 403 200 GDU GDU . 
E 3 HOH A 1 1 1 HOH HOH . 
E 3 HOH A 2 2 2 HOH HOH . 
E 3 HOH A 3 3 3 HOH HOH . 
E 3 HOH A 4 4 4 HOH HOH . 
E 3 HOH A 5 5 5 HOH HOH . 
E 3 HOH A 6 6 6 HOH HOH . 
E 3 HOH A 7 7 7 HOH HOH . 
E 3 HOH A 8 8 8 HOH HOH . 
E 3 HOH A 9 9 9 HOH HOH . 
E 3 HOH A 10 10 10 HOH HOH . 
E 3 HOH A 11 11 11 HOH HOH . 
E 3 HOH A 12 12 12 HOH HOH . 
E 3 HOH A 13 13 13 HOH HOH . 
E 3 HOH A 14 14 14 HOH HOH . 
E 3 HOH A 15 15 15 HOH HOH . 
E 3 HOH A 16 16 16 HOH HOH . 
E 3 HOH A 17 17 17 HOH HOH . 
E 3 HOH A 18 18 18 HOH HOH . 
E 3 HOH A 19 19 19 HOH HOH . 
E 3 HOH A 20 20 20 HOH HOH . 
E 3 HOH A 21 21 21 HOH HOH . 
E 3 HOH A 22 23 23 HOH HOH . 
E 3 HOH A 23 24 24 HOH HOH . 
E 3 HOH A 24 25 25 HOH HOH . 
E 3 HOH A 25 54 54 HOH HOH . 
E 3 HOH A 26 67 67 HOH HOH . 
E 3 HOH A 27 69 69 HOH HOH . 
E 3 HOH A 28 74 74 HOH HOH . 
E 3 HOH A 29 75 75 HOH HOH . 
E 3 HOH A 30 76 76 HOH HOH . 
E 3 HOH A 31 77 77 HOH HOH . 
E 3 HOH A 32 500 500 HOH HOH . 
F 3 HOH B 1 22 22 HOH HOH . 
F 3 HOH B 2 26 26 HOH HOH . 
F 3 HOH B 3 27 27 HOH HOH . 
F 3 HOH B 4 28 28 HOH HOH . 
F 3 HOH B 5 29 29 HOH HOH . 
F 3 HOH B 6 30 30 HOH HOH . 
F 3 HOH B 7 31 31 HOH HOH . 
F 3 HOH B 8 32 32 HOH HOH . 
F 3 HOH B 9 33 33 HOH HOH . 
F 3 HOH B 10 34 34 HOH HOH . 
F 3 HOH B 11 35 35 HOH HOH . 
F 3 HOH B 12 36 36 HOH HOH . 
F 3 HOH B 13 37 37 HOH HOH . 
F 3 HOH B 14 38 38 HOH HOH . 
F 3 HOH B 15 39 39 HOH HOH . 
F 3 HOH B 16 40 40 HOH HOH . 
F 3 HOH B 17 41 41 HOH HOH . 
F 3 HOH B 18 42 42 HOH HOH . 
F 3 HOH B 19 43 43 HOH HOH . 
F 3 HOH B 20 44 44 HOH HOH . 
F 3 HOH B 21 45 45 HOH HOH . 
F 3 HOH B 22 46 46 HOH HOH . 
F 3 HOH B 23 47 47 HOH HOH . 
F 3 HOH B 24 48 48 HOH HOH . 
F 3 HOH B 25 49 49 HOH HOH . 
F 3 HOH B 26 50 50 HOH HOH . 
F 3 HOH B 27 51 51 HOH HOH . 
F 3 HOH B 28 52 52 HOH HOH . 
F 3 HOH B 29 53 53 HOH HOH . 
F 3 HOH B 30 55 55 HOH HOH . 
F 3 HOH B 31 56 56 HOH HOH . 
F 3 HOH B 32 57 57 HOH HOH . 
F 3 HOH B 33 58 58 HOH HOH . 
F 3 HOH B 34 59 59 HOH HOH . 
F 3 HOH B 35 60 60 HOH HOH . 
F 3 HOH B 36 61 61 HOH HOH . 
F 3 HOH B 37 62 62 HOH HOH . 
F 3 HOH B 38 63 63 HOH HOH . 
F 3 HOH B 39 64 64 HOH HOH . 
F 3 HOH B 40 65 65 HOH HOH . 
F 3 HOH B 41 66 66 HOH HOH . 
F 3 HOH B 42 68 68 HOH HOH . 
F 3 HOH B 43 70 70 HOH HOH . 
F 3 HOH B 44 71 71 HOH HOH . 
F 3 HOH B 45 72 72 HOH HOH . 
F 3 HOH B 46 73 73 HOH HOH . 
F 3 HOH B 47 600 600 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 GDU . . . D 2 19.386 20.483 40.386 1 53.81 ? N1 GDU 403 B 1 
HETATM 2 C C2 GDU . . . D 2 20.767 20.583 40.646 1 49.97 ? C2 GDU 403 B 1 
HETATM 3 N N3 GDU . . . D 2 21.562 20.345 39.547 1 47.89 ? N3 GDU 403 B 1 
HETATM 4 C C4 GDU . . . D 2 21.136 20.027 38.242 1 52.72 ? C4 GDU 403 B 1 
HETATM 5 C C5 GDU . . . D 2 19.712 19.954 38.068 1 52.17 ? C5 GDU 403 B 1 
HETATM 6 C C6 GDU . . . D 2 18.911 20.172 39.089 1 50.91 ? C6 GDU 403 B 1 
HETATM 7 O O2 GDU . . . D 2 21.158 20.862 41.795 1 40.18 ? O2 GDU 403 B 1 
HETATM 8 O O4 GDU . . . D 2 21.962 19.831 37.354 1 58.8 ? O4 GDU 403 B 1 
HETATM 9 C C1D GDU . . . D 2 18.488 20.726 41.558 1 62.89 ? C1D GDU 403 B 1 
HETATM 10 C C2D GDU . . . D 2 18.098 22.087 41.961 1 65.54 ? C2D GDU 403 B 1 
HETATM 11 O O2D GDU . . . D 2 18.852 22.452 43.119 1 67.57 ? O2D GDU 403 B 1 
HETATM 12 C C3D GDU . . . D 2 16.584 22.003 42.232 1 69.93 ? C3D GDU 403 B 1 
HETATM 13 C C4D GDU . . . D 2 16.09 20.685 41.62 1 72.18 ? C4D GDU 403 B 1 
HETATM 14 O O4D GDU . . . D 2 17.318 19.947 41.38 1 68.13 ? O4D GDU 403 B 1 
HETATM 15 O O3D GDU . . . D 2 16.354 21.971 43.638 1 67.73 ? O3D GDU 403 B 1 
HETATM 16 C C5D GDU . . . D 2 15.218 20.828 40.346 1 77.76 ? C5D GDU 403 B 1 
HETATM 17 O O5D GDU . . . D 2 15.684 21.602 39.188 1 90.53 ? O5D GDU 403 B 1 
HETATM 18 P PA GDU . . . D 2 14.897 21.815 37.766 1 96.1 ? PA GDU 403 B 1 
HETATM 19 O O1A GDU . . . D 2 15.198 23.023 36.991 1 98.32 ? O1A GDU 403 B 1 
HETATM 20 O O2A GDU . . . D 2 13.578 21.144 37.425 1 93.68 ? O2A GDU 403 B 1 
HETATM 21 O O3A GDU . . . D 2 13.967 22.683 38.898 1 98.74 ? O3A GDU 403 B 1 
HETATM 22 P PB GDU . . . D 2 13.103 24.028 38.806 1 99 ? PB GDU 403 B 1 
HETATM 23 O O1B GDU . . . D 2 12.393 24.431 40.212 1 98.79 ? O1B GDU 403 B 1 
HETATM 24 O O2B GDU . . . D 2 12.701 24.673 37.486 1 99 ? O2B GDU 403 B 1 
HETATM 25 O O3B GDU . . . D 2 12.05 23.119 38.221 1 99 ? O3B GDU 403 B 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           25 
#