data_1FRF # _model_server_result.job_id 2_eJ85538Exr7XHrZfOcHA _model_server_result.datetime_utc '2024-11-17 06:43:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1frf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":566}' # _entry.id 1FRF # _exptl.entry_id 1FRF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.88 _cell.angle_gamma 90 _cell.entry_id 1FRF _cell.length_a 65.61 _cell.length_b 99.77 _cell.length_c 184.51 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FRF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 75 L CYS 75 1_555 B SG CYS 546 L CYS 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? disulf ? disulf2 B SG CYS 259 L CYS 259 1_555 B SG CYS 436 L CYS 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc1 A SG CYS 17 S CYS 17 1_555 E FE1 SF4 . S SF4 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc2 A SG CYS 20 S CYS 20 1_555 E FE4 SF4 . S SF4 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc3 A SG CYS 114 S CYS 114 1_555 E FE2 SF4 . S SF4 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc4 A SG CYS 147 S CYS 147 1_555 E FE3 SF4 . S SF4 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc5 A ND1 HIS 184 S HIS 184 1_555 C FE2 SF4 . S SF4 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc6 A SG CYS 187 S CYS 187 1_555 C FE4 SF4 . S SF4 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc7 A SG CYS 212 S CYS 212 1_555 C FE3 SF4 . S SF4 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc8 A SG CYS 218 S CYS 218 1_555 C FE1 SF4 . S SF4 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc9 A SG CYS 227 S CYS 227 1_555 D FE3 F3S . S F3S 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc10 A SG CYS 245 S CYS 245 1_555 D FE4 F3S . S F3S 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc11 A SG CYS 248 S CYS 248 1_555 D FE1 F3S . S F3S 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc12 B OE1 GLU 53 L GLU 53 1_555 H MG MG . L MG 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc13 B SG CYS 72 L CYS 72 1_555 G NI NI . L NI 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc14 B SG CYS 75 L CYS 75 1_555 F FE FE . L FE 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc15 B SG CYS 75 L CYS 75 1_555 G NI NI . L NI 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.618 ? metalc ? metalc16 B O LEU 495 L LEU 495 1_555 H MG MG . L MG 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc17 B SG CYS 543 L CYS 543 1_555 G NI NI . L NI 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc18 B SG CYS 546 L CYS 546 1_555 F FE FE . L FE 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc19 B SG CYS 546 L CYS 546 1_555 G NI NI . L NI 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc20 B NE2 HIS 549 L HIS 549 1_555 H MG MG . L MG 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc21 F FE FE . L FE 565 1_555 J O HOH . L HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1FRF _atom_sites.fract_transf_matrix[1][1] 0.015241 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000234 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010023 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00542 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SF4 S 1 265 265 SF4 FS4 . D 4 F3S S 1 266 266 F3S FS3 . E 3 SF4 S 1 267 267 SF4 FS4 . F 5 FE L 1 565 550 FE FE . G 6 NI L 1 566 551 NI NI . H 7 MG L 1 567 552 MG MG . I 8 HOH S 1 268 1 HOH HOH . I 8 HOH S 2 269 2 HOH HOH . I 8 HOH S 3 270 4 HOH HOH . I 8 HOH S 4 271 8 HOH HOH . I 8 HOH S 5 272 10 HOH HOH . I 8 HOH S 6 273 12 HOH HOH . I 8 HOH S 7 274 14 HOH HOH . I 8 HOH S 8 275 15 HOH HOH . I 8 HOH S 9 276 19 HOH HOH . I 8 HOH S 10 277 21 HOH HOH . I 8 HOH S 11 278 22 HOH HOH . I 8 HOH S 12 279 23 HOH HOH . I 8 HOH S 13 280 28 HOH HOH . I 8 HOH S 14 281 32 HOH HOH . I 8 HOH S 15 282 33 HOH HOH . I 8 HOH S 16 283 35 HOH HOH . I 8 HOH S 17 284 40 HOH HOH . I 8 HOH S 18 285 43 HOH HOH . I 8 HOH S 19 286 44 HOH HOH . I 8 HOH S 20 287 45 HOH HOH . I 8 HOH S 21 288 48 HOH HOH . I 8 HOH S 22 289 57 HOH HOH . I 8 HOH S 23 290 59 HOH HOH . I 8 HOH S 24 291 61 HOH HOH . I 8 HOH S 25 292 62 HOH HOH . I 8 HOH S 26 293 65 HOH HOH . I 8 HOH S 27 294 67 HOH HOH . I 8 HOH S 28 295 68 HOH HOH . I 8 HOH S 29 296 69 HOH HOH . I 8 HOH S 30 297 70 HOH HOH . I 8 HOH S 31 298 71 HOH HOH . I 8 HOH S 32 299 75 HOH HOH . I 8 HOH S 33 300 77 HOH HOH . I 8 HOH S 34 301 81 HOH HOH . I 8 HOH S 35 302 82 HOH HOH . I 8 HOH S 36 303 87 HOH HOH . I 8 HOH S 37 304 89 HOH HOH . I 8 HOH S 38 305 94 HOH HOH . I 8 HOH S 39 306 95 HOH HOH . I 8 HOH S 40 307 97 HOH HOH . I 8 HOH S 41 308 99 HOH HOH . I 8 HOH S 42 309 100 HOH HOH . I 8 HOH S 43 310 101 HOH HOH . I 8 HOH S 44 311 104 HOH HOH . I 8 HOH S 45 312 106 HOH HOH . I 8 HOH S 46 313 107 HOH HOH . I 8 HOH S 47 314 109 HOH HOH . I 8 HOH S 48 315 110 HOH HOH . I 8 HOH S 49 316 114 HOH HOH . I 8 HOH S 50 317 120 HOH HOH . I 8 HOH S 51 318 121 HOH HOH . I 8 HOH S 52 319 123 HOH HOH . I 8 HOH S 53 320 128 HOH HOH . I 8 HOH S 54 321 130 HOH HOH . J 8 HOH L 1 568 3 HOH HOH . J 8 HOH L 2 569 5 HOH HOH . J 8 HOH L 3 570 6 HOH HOH . J 8 HOH L 4 571 7 HOH HOH . J 8 HOH L 5 572 9 HOH HOH . J 8 HOH L 6 573 11 HOH HOH . J 8 HOH L 7 574 13 HOH HOH . J 8 HOH L 8 575 16 HOH HOH . J 8 HOH L 9 576 17 HOH HOH . J 8 HOH L 10 577 18 HOH HOH . J 8 HOH L 11 578 20 HOH HOH . J 8 HOH L 12 579 24 HOH HOH . J 8 HOH L 13 580 25 HOH HOH . J 8 HOH L 14 581 26 HOH HOH . J 8 HOH L 15 582 27 HOH HOH . J 8 HOH L 16 583 29 HOH HOH . J 8 HOH L 17 584 30 HOH HOH . J 8 HOH L 18 585 31 HOH HOH . J 8 HOH L 19 586 34 HOH HOH . J 8 HOH L 20 587 36 HOH HOH . J 8 HOH L 21 588 37 HOH HOH . J 8 HOH L 22 589 38 HOH HOH . J 8 HOH L 23 590 39 HOH HOH . J 8 HOH L 24 591 41 HOH HOH . J 8 HOH L 25 592 42 HOH HOH . J 8 HOH L 26 593 46 HOH HOH . J 8 HOH L 27 594 47 HOH HOH . J 8 HOH L 28 595 49 HOH HOH . J 8 HOH L 29 596 50 HOH HOH . J 8 HOH L 30 597 51 HOH HOH . J 8 HOH L 31 598 52 HOH HOH . J 8 HOH L 32 599 53 HOH HOH . J 8 HOH L 33 600 54 HOH HOH . J 8 HOH L 34 601 55 HOH HOH . J 8 HOH L 35 602 56 HOH HOH . J 8 HOH L 36 603 58 HOH HOH . J 8 HOH L 37 604 60 HOH HOH . J 8 HOH L 38 605 63 HOH HOH . J 8 HOH L 39 606 64 HOH HOH . J 8 HOH L 40 607 66 HOH HOH . J 8 HOH L 41 608 72 HOH HOH . J 8 HOH L 42 609 73 HOH HOH . J 8 HOH L 43 610 74 HOH HOH . J 8 HOH L 44 611 76 HOH HOH . J 8 HOH L 45 612 78 HOH HOH . J 8 HOH L 46 613 79 HOH HOH . J 8 HOH L 47 614 80 HOH HOH . J 8 HOH L 48 615 83 HOH HOH . J 8 HOH L 49 616 84 HOH HOH . J 8 HOH L 50 617 85 HOH HOH . J 8 HOH L 51 618 86 HOH HOH . J 8 HOH L 52 619 88 HOH HOH . J 8 HOH L 53 620 90 HOH HOH . J 8 HOH L 54 621 91 HOH HOH . J 8 HOH L 55 622 92 HOH HOH . J 8 HOH L 56 623 93 HOH HOH . J 8 HOH L 57 624 96 HOH HOH . J 8 HOH L 58 625 98 HOH HOH . J 8 HOH L 59 626 102 HOH HOH . J 8 HOH L 60 627 103 HOH HOH . J 8 HOH L 61 628 105 HOH HOH . J 8 HOH L 62 629 108 HOH HOH . J 8 HOH L 63 630 111 HOH HOH . J 8 HOH L 64 631 112 HOH HOH . J 8 HOH L 65 632 113 HOH HOH . J 8 HOH L 66 633 115 HOH HOH . J 8 HOH L 67 634 116 HOH HOH . J 8 HOH L 68 635 117 HOH HOH . J 8 HOH L 69 636 118 HOH HOH . J 8 HOH L 70 637 119 HOH HOH . J 8 HOH L 71 638 122 HOH HOH . J 8 HOH L 72 639 124 HOH HOH . J 8 HOH L 73 640 125 HOH HOH . J 8 HOH L 74 641 126 HOH HOH . J 8 HOH L 75 642 127 HOH HOH . J 8 HOH L 76 643 129 HOH HOH . J 8 HOH L 77 644 131 HOH HOH . J 8 HOH L 78 645 132 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 6 _atom_site.Cartn_x 24.622 _atom_site.Cartn_y -1.181 _atom_site.Cartn_z 81.903 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 566 _atom_site.auth_asym_id L _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 65 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 468 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #