data_1FRW # _model_server_result.job_id YSUK7xj0nWQNE6BxV11hTw _model_server_result.datetime_utc '2024-10-11 14:28:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1frw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":197}' # _entry.id 1FRW # _exptl.entry_id 1FRW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FRW _cell.length_a 124.387 _cell.length_b 124.387 _cell.length_c 67.399 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FRW _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 49 A HIS 49 1_555 C ZN ZN . A ZN 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc2 A ND1 HIS 49 A HIS 49 7_555 C ZN ZN . A ZN 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc3 A OD2 ASP 101 A ASP 101 1_555 D MN MN . A MN 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc4 B OXT ACT . A ACT 195 1_555 C ZN ZN . A ZN 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc5 B OXT ACT . A ACT 195 1_555 C ZN ZN . A ZN 196 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? metalc ? metalc6 D MN MN . A MN 197 1_555 E O2G GTP . A GTP 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc7 D MN MN . A MN 197 1_555 E O2B GTP . A GTP 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? metalc ? metalc8 D MN MN . A MN 197 1_555 F O HOH . A HOH 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc9 D MN MN . A MN 197 1_555 F O HOH . A HOH 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1FRW _atom_sites.fract_transf_matrix[1][1] 0.008039 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014837 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 195 2 ACT ACT . C 3 ZN A 1 196 4 ZN ZN . D 4 MN A 1 197 5 MN MN . E 5 GTP A 1 198 3 GTP GTP . F 6 HOH A 1 199 6 HOH HOH . F 6 HOH A 2 200 7 HOH HOH . F 6 HOH A 3 201 8 HOH HOH . F 6 HOH A 4 202 9 HOH HOH . F 6 HOH A 5 203 10 HOH HOH . F 6 HOH A 6 204 11 HOH HOH . F 6 HOH A 7 205 12 HOH HOH . F 6 HOH A 8 206 13 HOH HOH . F 6 HOH A 9 207 14 HOH HOH . F 6 HOH A 10 208 15 HOH HOH . F 6 HOH A 11 209 16 HOH HOH . F 6 HOH A 12 210 17 HOH HOH . F 6 HOH A 13 211 18 HOH HOH . F 6 HOH A 14 212 19 HOH HOH . F 6 HOH A 15 213 20 HOH HOH . F 6 HOH A 16 214 21 HOH HOH . F 6 HOH A 17 215 22 HOH HOH . F 6 HOH A 18 216 23 HOH HOH . F 6 HOH A 19 217 24 HOH HOH . F 6 HOH A 20 218 25 HOH HOH . F 6 HOH A 21 219 26 HOH HOH . F 6 HOH A 22 220 27 HOH HOH . F 6 HOH A 23 221 28 HOH HOH . F 6 HOH A 24 222 29 HOH HOH . F 6 HOH A 25 223 30 HOH HOH . F 6 HOH A 26 224 31 HOH HOH . F 6 HOH A 27 225 32 HOH HOH . F 6 HOH A 28 226 33 HOH HOH . F 6 HOH A 29 227 34 HOH HOH . F 6 HOH A 30 228 35 HOH HOH . F 6 HOH A 31 229 36 HOH HOH . F 6 HOH A 32 230 37 HOH HOH . F 6 HOH A 33 231 38 HOH HOH . F 6 HOH A 34 232 39 HOH HOH . F 6 HOH A 35 233 40 HOH HOH . F 6 HOH A 36 234 41 HOH HOH . F 6 HOH A 37 235 42 HOH HOH . F 6 HOH A 38 236 43 HOH HOH . F 6 HOH A 39 237 44 HOH HOH . F 6 HOH A 40 238 45 HOH HOH . F 6 HOH A 41 239 46 HOH HOH . F 6 HOH A 42 240 47 HOH HOH . F 6 HOH A 43 241 48 HOH HOH . F 6 HOH A 44 242 49 HOH HOH . F 6 HOH A 45 243 50 HOH HOH . F 6 HOH A 46 244 51 HOH HOH . F 6 HOH A 47 245 52 HOH HOH . F 6 HOH A 48 246 53 HOH HOH . F 6 HOH A 49 247 54 HOH HOH . F 6 HOH A 50 248 55 HOH HOH . F 6 HOH A 51 249 56 HOH HOH . F 6 HOH A 52 250 57 HOH HOH . F 6 HOH A 53 251 58 HOH HOH . F 6 HOH A 54 252 59 HOH HOH . F 6 HOH A 55 253 60 HOH HOH . F 6 HOH A 56 254 61 HOH HOH . F 6 HOH A 57 255 62 HOH HOH . F 6 HOH A 58 256 63 HOH HOH . F 6 HOH A 59 257 64 HOH HOH . F 6 HOH A 60 258 65 HOH HOH . F 6 HOH A 61 259 66 HOH HOH . F 6 HOH A 62 260 67 HOH HOH . F 6 HOH A 63 261 68 HOH HOH . F 6 HOH A 64 262 69 HOH HOH . F 6 HOH A 65 263 70 HOH HOH . F 6 HOH A 66 264 71 HOH HOH . F 6 HOH A 67 265 72 HOH HOH . F 6 HOH A 68 266 74 HOH HOH . F 6 HOH A 69 267 75 HOH HOH . F 6 HOH A 70 268 76 HOH HOH . F 6 HOH A 71 269 77 HOH HOH . F 6 HOH A 72 270 78 HOH HOH . F 6 HOH A 73 271 79 HOH HOH . F 6 HOH A 74 272 80 HOH HOH . F 6 HOH A 75 273 81 HOH HOH . F 6 HOH A 76 274 82 HOH HOH . F 6 HOH A 77 275 83 HOH HOH . F 6 HOH A 78 276 84 HOH HOH . F 6 HOH A 79 277 85 HOH HOH . F 6 HOH A 80 278 86 HOH HOH . F 6 HOH A 81 279 87 HOH HOH . F 6 HOH A 82 280 88 HOH HOH . F 6 HOH A 83 281 89 HOH HOH . F 6 HOH A 84 282 90 HOH HOH . F 6 HOH A 85 283 91 HOH HOH . F 6 HOH A 86 284 92 HOH HOH . F 6 HOH A 87 285 93 HOH HOH . F 6 HOH A 88 286 94 HOH HOH . F 6 HOH A 89 287 95 HOH HOH . F 6 HOH A 90 288 96 HOH HOH . F 6 HOH A 91 289 97 HOH HOH . F 6 HOH A 92 290 98 HOH HOH . F 6 HOH A 93 291 99 HOH HOH . F 6 HOH A 94 292 100 HOH HOH . F 6 HOH A 95 293 101 HOH HOH . F 6 HOH A 96 294 102 HOH HOH . F 6 HOH A 97 295 103 HOH HOH . F 6 HOH A 98 296 104 HOH HOH . F 6 HOH A 99 297 105 HOH HOH . F 6 HOH A 100 298 106 HOH HOH . F 6 HOH A 101 299 107 HOH HOH . F 6 HOH A 102 300 108 HOH HOH . F 6 HOH A 103 301 109 HOH HOH . F 6 HOH A 104 302 110 HOH HOH . F 6 HOH A 105 303 111 HOH HOH . F 6 HOH A 106 304 112 HOH HOH . F 6 HOH A 107 305 113 HOH HOH . F 6 HOH A 108 306 114 HOH HOH . F 6 HOH A 109 307 115 HOH HOH . F 6 HOH A 110 308 116 HOH HOH . F 6 HOH A 111 309 117 HOH HOH . F 6 HOH A 112 310 118 HOH HOH . F 6 HOH A 113 311 119 HOH HOH . F 6 HOH A 114 312 121 HOH HOH . F 6 HOH A 115 313 122 HOH HOH . F 6 HOH A 116 314 123 HOH HOH . F 6 HOH A 117 315 124 HOH HOH . F 6 HOH A 118 316 125 HOH HOH . F 6 HOH A 119 317 126 HOH HOH . F 6 HOH A 120 318 127 HOH HOH . F 6 HOH A 121 319 128 HOH HOH . F 6 HOH A 122 320 129 HOH HOH . F 6 HOH A 123 321 130 HOH HOH . F 6 HOH A 124 322 131 HOH HOH . F 6 HOH A 125 323 132 HOH HOH . F 6 HOH A 126 324 133 HOH HOH . F 6 HOH A 127 325 134 HOH HOH . F 6 HOH A 128 326 135 HOH HOH . F 6 HOH A 129 327 136 HOH HOH . F 6 HOH A 130 328 137 HOH HOH . F 6 HOH A 131 329 138 HOH HOH . F 6 HOH A 132 330 139 HOH HOH . F 6 HOH A 133 331 140 HOH HOH . F 6 HOH A 134 332 141 HOH HOH . F 6 HOH A 135 333 142 HOH HOH . F 6 HOH A 136 334 143 HOH HOH . F 6 HOH A 137 335 144 HOH HOH . F 6 HOH A 138 336 145 HOH HOH . F 6 HOH A 139 337 146 HOH HOH . F 6 HOH A 140 338 147 HOH HOH . F 6 HOH A 141 339 148 HOH HOH . F 6 HOH A 142 340 149 HOH HOH . F 6 HOH A 143 341 150 HOH HOH . F 6 HOH A 144 342 152 HOH HOH . F 6 HOH A 145 343 153 HOH HOH . F 6 HOH A 146 344 154 HOH HOH . F 6 HOH A 147 345 155 HOH HOH . F 6 HOH A 148 346 156 HOH HOH . F 6 HOH A 149 347 157 HOH HOH . F 6 HOH A 150 348 159 HOH HOH . F 6 HOH A 151 349 160 HOH HOH . F 6 HOH A 152 350 161 HOH HOH . F 6 HOH A 153 351 162 HOH HOH . F 6 HOH A 154 352 163 HOH HOH . F 6 HOH A 155 353 164 HOH HOH . F 6 HOH A 156 354 165 HOH HOH . F 6 HOH A 157 355 166 HOH HOH . F 6 HOH A 158 356 167 HOH HOH . F 6 HOH A 159 357 168 HOH HOH . F 6 HOH A 160 358 169 HOH HOH . F 6 HOH A 161 359 170 HOH HOH . F 6 HOH A 162 360 171 HOH HOH . F 6 HOH A 163 361 172 HOH HOH . F 6 HOH A 164 362 173 HOH HOH . F 6 HOH A 165 363 174 HOH HOH . F 6 HOH A 166 364 175 HOH HOH . F 6 HOH A 167 365 176 HOH HOH . F 6 HOH A 168 366 177 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 14.784 _atom_site.Cartn_y 29.823 _atom_site.Cartn_z 21.766 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.89 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 197 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #