data_1FRZ # _model_server_result.job_id SeLMwRl-dY8cfTk5qDHOaQ _model_server_result.datetime_utc '2024-11-28 16:41:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1frz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2567}' # _entry.id 1FRZ # _exptl.entry_id 1FRZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.188 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1FRZ _cell.length_a 125.72 _cell.length_b 125.72 _cell.length_c 223.95 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FRZ _symmetry.cell_setting rhombohedral _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C8 H16 N O9 P' _chem_comp.formula_weight 301.188 _chem_comp.id 16G _chem_comp.mon_nstd_flag n _chem_comp.name 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms N-ACETYL-D-GLUCOSAMINE-6-PHOSPHATE;N-acetyl-6-O-phosphono-alpha-D-glucosamine;2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucose;2-acetamido-2-deoxy-6-O-phosphono-D-glucose;2-acetamido-2-deoxy-6-O-phosphono-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 16G sing 1 n n C1 O1 16G sing 2 n n C1 O5 16G sing 3 n n C1 H1 16G sing 4 n n C2 C3 16G sing 5 n n C2 N2 16G sing 6 n n C2 H2 16G sing 7 n n C3 C4 16G sing 8 n n C3 O3 16G sing 9 n n C3 H3 16G sing 10 n n C4 C5 16G sing 11 n n C4 O4 16G sing 12 n n C4 H4 16G sing 13 n n C5 C6 16G sing 14 n n C5 O5 16G sing 15 n n C5 H5 16G sing 16 n n C6 O6 16G sing 17 n n C6 H61 16G sing 18 n n C6 H62 16G sing 19 n n C7 C8 16G sing 20 n n C7 N2 16G sing 21 n n C7 O7 16G doub 22 n n C8 H81 16G sing 23 n n C8 H82 16G sing 24 n n C8 H83 16G sing 25 n n N2 HN2 16G sing 26 n n O1 HO1 16G sing 27 n n O3 HO3 16G sing 28 n n O4 HO4 16G sing 29 n n O6 P 16G sing 30 n n P O1P 16G doub 31 n n P O2P 16G sing 32 n n P O3P 16G sing 33 n n O2P HOP2 16G sing 34 n n O3P HOP3 16G sing 35 n n # _pdbx_chem_comp_identifier.comp_id 16G _pdbx_chem_comp_identifier.identifier a-D-GlcpNAc6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1FRZ _atom_sites.fract_transf_matrix[1][1] 0.007954 _atom_sites.fract_transf_matrix[1][2] 0.004592 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009185 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004465 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 16G A 1 1267 1267 16G 16G . D 2 16G B 1 2567 2567 16G 16G . E 3 HOH A 1 1268 2 HOH HOH . E 3 HOH A 2 1269 8 HOH HOH . E 3 HOH A 3 1270 9 HOH HOH . E 3 HOH A 4 1271 10 HOH HOH . E 3 HOH A 5 1272 12 HOH HOH . E 3 HOH A 6 1273 19 HOH HOH . E 3 HOH A 7 1274 21 HOH HOH . E 3 HOH A 8 1275 22 HOH HOH . E 3 HOH A 9 1276 23 HOH HOH . E 3 HOH A 10 1277 24 HOH HOH . E 3 HOH A 11 1278 26 HOH HOH . E 3 HOH A 12 1279 27 HOH HOH . E 3 HOH A 13 1280 28 HOH HOH . E 3 HOH A 14 1281 31 HOH HOH . E 3 HOH A 15 1282 33 HOH HOH . E 3 HOH A 16 1283 41 HOH HOH . E 3 HOH A 17 1284 42 HOH HOH . E 3 HOH A 18 1285 44 HOH HOH . E 3 HOH A 19 1286 46 HOH HOH . E 3 HOH A 20 1287 47 HOH HOH . E 3 HOH A 21 1288 49 HOH HOH . E 3 HOH A 22 1289 57 HOH HOH . E 3 HOH A 23 1290 58 HOH HOH . E 3 HOH A 24 1291 60 HOH HOH . E 3 HOH A 25 1292 63 HOH HOH . E 3 HOH A 26 1293 65 HOH HOH . E 3 HOH A 27 1294 67 HOH HOH . E 3 HOH A 28 1295 71 HOH HOH . E 3 HOH A 29 1296 72 HOH HOH . E 3 HOH A 30 1297 73 HOH HOH . E 3 HOH A 31 1298 74 HOH HOH . E 3 HOH A 32 1299 75 HOH HOH . E 3 HOH A 33 1300 76 HOH HOH . E 3 HOH A 34 1301 77 HOH HOH . E 3 HOH A 35 1302 83 HOH HOH . E 3 HOH A 36 1303 89 HOH HOH . E 3 HOH A 37 1304 92 HOH HOH . E 3 HOH A 38 1305 97 HOH HOH . E 3 HOH A 39 1306 98 HOH HOH . E 3 HOH A 40 1307 99 HOH HOH . E 3 HOH A 41 1308 100 HOH HOH . E 3 HOH A 42 1309 101 HOH HOH . E 3 HOH A 43 1310 103 HOH HOH . E 3 HOH A 44 1311 106 HOH HOH . E 3 HOH A 45 1312 107 HOH HOH . E 3 HOH A 46 1313 111 HOH HOH . E 3 HOH A 47 1314 112 HOH HOH . E 3 HOH A 48 1315 113 HOH HOH . E 3 HOH A 49 1316 114 HOH HOH . E 3 HOH A 50 1317 115 HOH HOH . E 3 HOH A 51 1318 119 HOH HOH . E 3 HOH A 52 1319 123 HOH HOH . E 3 HOH A 53 1320 124 HOH HOH . E 3 HOH A 54 1321 129 HOH HOH . E 3 HOH A 55 1322 134 HOH HOH . E 3 HOH A 56 1323 135 HOH HOH . E 3 HOH A 57 1324 141 HOH HOH . E 3 HOH A 58 1325 148 HOH HOH . E 3 HOH A 59 1326 150 HOH HOH . E 3 HOH A 60 1327 154 HOH HOH . E 3 HOH A 61 1328 155 HOH HOH . E 3 HOH A 62 1329 156 HOH HOH . E 3 HOH A 63 1330 158 HOH HOH . E 3 HOH A 64 1331 163 HOH HOH . E 3 HOH A 65 1332 164 HOH HOH . E 3 HOH A 66 1333 165 HOH HOH . E 3 HOH A 67 1334 166 HOH HOH . E 3 HOH A 68 1335 167 HOH HOH . E 3 HOH A 69 1336 170 HOH HOH . E 3 HOH A 70 1337 171 HOH HOH . E 3 HOH A 71 1338 172 HOH HOH . E 3 HOH A 72 1339 173 HOH HOH . E 3 HOH A 73 1340 174 HOH HOH . E 3 HOH A 74 1341 181 HOH HOH . E 3 HOH A 75 1342 185 HOH HOH . E 3 HOH A 76 1343 189 HOH HOH . E 3 HOH A 77 1344 201 HOH HOH . E 3 HOH A 78 1345 203 HOH HOH . E 3 HOH A 79 1346 206 HOH HOH . E 3 HOH A 80 1347 208 HOH HOH . E 3 HOH A 81 1348 215 HOH HOH . E 3 HOH A 82 1349 219 HOH HOH . E 3 HOH A 83 1350 220 HOH HOH . E 3 HOH A 84 1351 221 HOH HOH . E 3 HOH A 85 1352 223 HOH HOH . E 3 HOH A 86 1353 226 HOH HOH . E 3 HOH A 87 1354 229 HOH HOH . E 3 HOH A 88 1355 231 HOH HOH . E 3 HOH A 89 1356 236 HOH HOH . E 3 HOH A 90 1357 240 HOH HOH . E 3 HOH A 91 1358 244 HOH HOH . E 3 HOH A 92 1359 246 HOH HOH . E 3 HOH A 93 1360 251 HOH HOH . E 3 HOH A 94 1361 255 HOH HOH . E 3 HOH A 95 1362 258 HOH HOH . E 3 HOH A 96 1363 262 HOH HOH . E 3 HOH A 97 1364 263 HOH HOH . E 3 HOH A 98 1365 266 HOH HOH . E 3 HOH A 99 1366 267 HOH HOH . E 3 HOH A 100 1367 275 HOH HOH . E 3 HOH A 101 1368 289 HOH HOH . E 3 HOH A 102 1369 298 HOH HOH . E 3 HOH A 103 1370 305 HOH HOH . E 3 HOH A 104 1371 306 HOH HOH . E 3 HOH A 105 1372 308 HOH HOH . E 3 HOH A 106 1373 310 HOH HOH . E 3 HOH A 107 1374 311 HOH HOH . E 3 HOH A 108 1375 312 HOH HOH . F 3 HOH B 1 2568 4 HOH HOH . F 3 HOH B 2 2569 5 HOH HOH . F 3 HOH B 3 2570 6 HOH HOH . F 3 HOH B 4 2571 7 HOH HOH . F 3 HOH B 5 2572 11 HOH HOH . F 3 HOH B 6 2573 13 HOH HOH . F 3 HOH B 7 2574 14 HOH HOH . F 3 HOH B 8 2575 15 HOH HOH . F 3 HOH B 9 2576 16 HOH HOH . F 3 HOH B 10 2577 17 HOH HOH . F 3 HOH B 11 2578 18 HOH HOH . F 3 HOH B 12 2579 20 HOH HOH . F 3 HOH B 13 2580 25 HOH HOH . F 3 HOH B 14 2581 29 HOH HOH . F 3 HOH B 15 2582 30 HOH HOH . F 3 HOH B 16 2583 32 HOH HOH . F 3 HOH B 17 2584 34 HOH HOH . F 3 HOH B 18 2585 35 HOH HOH . F 3 HOH B 19 2586 36 HOH HOH . F 3 HOH B 20 2587 37 HOH HOH . F 3 HOH B 21 2588 38 HOH HOH . F 3 HOH B 22 2589 40 HOH HOH . F 3 HOH B 23 2590 43 HOH HOH . F 3 HOH B 24 2591 45 HOH HOH . F 3 HOH B 25 2592 48 HOH HOH . F 3 HOH B 26 2593 50 HOH HOH . F 3 HOH B 27 2594 51 HOH HOH . F 3 HOH B 28 2595 52 HOH HOH . F 3 HOH B 29 2596 53 HOH HOH . F 3 HOH B 30 2597 54 HOH HOH . F 3 HOH B 31 2598 55 HOH HOH . F 3 HOH B 32 2599 56 HOH HOH . F 3 HOH B 33 2600 59 HOH HOH . F 3 HOH B 34 2601 61 HOH HOH . F 3 HOH B 35 2602 62 HOH HOH . F 3 HOH B 36 2603 66 HOH HOH . F 3 HOH B 37 2604 70 HOH HOH . F 3 HOH B 38 2605 78 HOH HOH . F 3 HOH B 39 2606 81 HOH HOH . F 3 HOH B 40 2607 82 HOH HOH . F 3 HOH B 41 2608 84 HOH HOH . F 3 HOH B 42 2609 88 HOH HOH . F 3 HOH B 43 2610 90 HOH HOH . F 3 HOH B 44 2611 91 HOH HOH . F 3 HOH B 45 2612 93 HOH HOH . F 3 HOH B 46 2613 94 HOH HOH . F 3 HOH B 47 2614 95 HOH HOH . F 3 HOH B 48 2615 96 HOH HOH . F 3 HOH B 49 2616 105 HOH HOH . F 3 HOH B 50 2617 108 HOH HOH . F 3 HOH B 51 2618 110 HOH HOH . F 3 HOH B 52 2619 116 HOH HOH . F 3 HOH B 53 2620 121 HOH HOH . F 3 HOH B 54 2621 126 HOH HOH . F 3 HOH B 55 2622 128 HOH HOH . F 3 HOH B 56 2623 130 HOH HOH . F 3 HOH B 57 2624 131 HOH HOH . F 3 HOH B 58 2625 132 HOH HOH . F 3 HOH B 59 2626 133 HOH HOH . F 3 HOH B 60 2627 136 HOH HOH . F 3 HOH B 61 2628 137 HOH HOH . F 3 HOH B 62 2629 139 HOH HOH . F 3 HOH B 63 2630 142 HOH HOH . F 3 HOH B 64 2631 143 HOH HOH . F 3 HOH B 65 2632 144 HOH HOH . F 3 HOH B 66 2633 145 HOH HOH . F 3 HOH B 67 2634 146 HOH HOH . F 3 HOH B 68 2635 149 HOH HOH . F 3 HOH B 69 2636 152 HOH HOH . F 3 HOH B 70 2637 157 HOH HOH . F 3 HOH B 71 2638 159 HOH HOH . F 3 HOH B 72 2639 160 HOH HOH . F 3 HOH B 73 2640 161 HOH HOH . F 3 HOH B 74 2641 175 HOH HOH . F 3 HOH B 75 2642 177 HOH HOH . F 3 HOH B 76 2643 179 HOH HOH . F 3 HOH B 77 2644 180 HOH HOH . F 3 HOH B 78 2645 183 HOH HOH . F 3 HOH B 79 2646 184 HOH HOH . F 3 HOH B 80 2647 186 HOH HOH . F 3 HOH B 81 2648 187 HOH HOH . F 3 HOH B 82 2649 188 HOH HOH . F 3 HOH B 83 2650 190 HOH HOH . F 3 HOH B 84 2651 192 HOH HOH . F 3 HOH B 85 2652 194 HOH HOH . F 3 HOH B 86 2653 199 HOH HOH . F 3 HOH B 87 2654 204 HOH HOH . F 3 HOH B 88 2655 205 HOH HOH . F 3 HOH B 89 2656 207 HOH HOH . F 3 HOH B 90 2657 211 HOH HOH . F 3 HOH B 91 2658 214 HOH HOH . F 3 HOH B 92 2659 217 HOH HOH . F 3 HOH B 93 2660 218 HOH HOH . F 3 HOH B 94 2661 224 HOH HOH . F 3 HOH B 95 2662 234 HOH HOH . F 3 HOH B 96 2663 235 HOH HOH . F 3 HOH B 97 2664 241 HOH HOH . F 3 HOH B 98 2665 243 HOH HOH . F 3 HOH B 99 2666 245 HOH HOH . F 3 HOH B 100 2667 252 HOH HOH . F 3 HOH B 101 2668 253 HOH HOH . F 3 HOH B 102 2669 256 HOH HOH . F 3 HOH B 103 2670 259 HOH HOH . F 3 HOH B 104 2671 264 HOH HOH . F 3 HOH B 105 2672 268 HOH HOH . F 3 HOH B 106 2673 270 HOH HOH . F 3 HOH B 107 2674 271 HOH HOH . F 3 HOH B 108 2675 272 HOH HOH . F 3 HOH B 109 2676 273 HOH HOH . F 3 HOH B 110 2677 274 HOH HOH . F 3 HOH B 111 2678 279 HOH HOH . F 3 HOH B 112 2679 281 HOH HOH . F 3 HOH B 113 2680 282 HOH HOH . F 3 HOH B 114 2681 285 HOH HOH . F 3 HOH B 115 2682 290 HOH HOH . F 3 HOH B 116 2683 291 HOH HOH . F 3 HOH B 117 2684 292 HOH HOH . F 3 HOH B 118 2685 293 HOH HOH . F 3 HOH B 119 2686 296 HOH HOH . F 3 HOH B 120 2687 297 HOH HOH . F 3 HOH B 121 2688 299 HOH HOH . F 3 HOH B 122 2689 300 HOH HOH . F 3 HOH B 123 2690 301 HOH HOH . F 3 HOH B 124 2691 303 HOH HOH . F 3 HOH B 125 2692 304 HOH HOH . F 3 HOH B 126 2693 307 HOH HOH . F 3 HOH B 127 2694 309 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 16G . . . D 2 9.298 -19.785 61.644 1 39.92 ? C1 16G 2567 B 1 HETATM 2 C C2 16G . . . D 2 10.339 -19.472 62.754 1 38.72 ? C2 16G 2567 B 1 HETATM 3 C C3 16G . . . D 2 9.578 -18.861 63.933 1 37.91 ? C3 16G 2567 B 1 HETATM 4 C C4 16G . . . D 2 8.944 -17.553 63.482 1 37.77 ? C4 16G 2567 B 1 HETATM 5 C C5 16G . . . D 2 8 -17.804 62.239 1 36.12 ? C5 16G 2567 B 1 HETATM 6 C C6 16G . . . D 2 7.592 -16.55 61.462 1 34.62 ? C6 16G 2567 B 1 HETATM 7 C C7 16G . . . D 2 12.043 -21.163 62.418 1 41.45 ? C7 16G 2567 B 1 HETATM 8 C C8 16G . . . D 2 12.669 -22.466 62.887 1 41.54 ? C8 16G 2567 B 1 HETATM 9 N N2 16G . . . D 2 10.986 -20.727 63.126 1 39.35 ? N2 16G 2567 B 1 HETATM 10 O O1 16G . . . D 2 8.315 -20.685 62.082 1 41.2 ? O1 16G 2567 B 1 HETATM 11 O O3 16G . . . D 2 10.458 -18.572 65.026 1 35.43 ? O3 16G 2567 B 1 HETATM 12 O O4 16G . . . D 2 8.207 -17.014 64.585 1 35.82 ? O4 16G 2567 B 1 HETATM 13 O O5 16G . . . D 2 8.686 -18.568 61.243 1 38.67 ? O5 16G 2567 B 1 HETATM 14 O O6 16G . . . D 2 6.953 -15.667 62.264 1 33.88 ? O6 16G 2567 B 1 HETATM 15 O O7 16G . . . D 2 12.502 -20.516 61.439 1 42.48 ? O7 16G 2567 B 1 HETATM 16 P P 16G . . . D 2 7.426 -14.213 62.572 1 28.75 ? P 16G 2567 B 1 HETATM 17 O O1P 16G . . . D 2 6.176 -13.507 62.27 1 29.41 ? O1P 16G 2567 B 1 HETATM 18 O O2P 16G . . . D 2 8.499 -13.8 61.669 1 29.53 ? O2P 16G 2567 B 1 HETATM 19 O O3P 16G . . . D 2 7.737 -14.298 63.985 1 30.45 ? O3P 16G 2567 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #