data_1FSA # _model_server_result.job_id NFUB04FNbg6Wg7um1LgyXg _model_server_result.datetime_utc '2024-10-20 19:45:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fsa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":340}' # _entry.id 1FSA # _exptl.entry_id 1FSA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FSA _cell.length_a 61.05 _cell.length_b 166.72 _cell.length_c 79.98 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FSA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 61.05 166.72 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 118 A ASP 118 1_555 D MN MN . A MN 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc2 A OD2 ASP 121 A ASP 121 1_555 D MN MN . A MN 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc3 A OE2 GLU 280 A GLU 280 1_555 D MN MN . A MN 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc4 C O1 F6P . A F6P 338 1_555 D MN MN . A MN 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc5 D MN MN . A MN 339 1_555 I O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc6 B OD2 ASP 118 B ASP 118 1_555 G MN MN . B MN 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc7 B OD1 ASP 121 B ASP 121 1_555 G MN MN . B MN 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc8 B OE2 GLU 280 B GLU 280 1_555 G MN MN . B MN 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc9 G MN MN . B MN 339 1_555 J O HOH . B HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 1FSA _atom_sites.fract_transf_matrix[1][1] 0.01638 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 F6P A 1 338 1 F6P F6P . D 3 MN A 1 339 3 MN MN . E 4 AMP A 1 340 2 AMP AMP . F 2 F6P B 1 338 1 F6P F6P . G 3 MN B 1 339 3 MN MN . H 4 AMP B 1 340 2 AMP AMP . I 5 HOH A 1 341 11 HOH HOH . I 5 HOH A 2 342 14 HOH HOH . I 5 HOH A 3 343 12 HOH HOH . I 5 HOH A 4 344 13 HOH HOH . I 5 HOH A 5 345 14 HOH HOH . I 5 HOH A 6 346 17 HOH HOH . I 5 HOH A 7 347 18 HOH HOH . I 5 HOH A 8 348 21 HOH HOH . I 5 HOH A 9 349 22 HOH HOH . I 5 HOH A 10 350 23 HOH HOH . I 5 HOH A 11 351 24 HOH HOH . I 5 HOH A 12 352 25 HOH HOH . I 5 HOH A 13 353 26 HOH HOH . I 5 HOH A 14 354 27 HOH HOH . I 5 HOH A 15 355 28 HOH HOH . I 5 HOH A 16 356 29 HOH HOH . I 5 HOH A 17 357 31 HOH HOH . I 5 HOH A 18 358 32 HOH HOH . I 5 HOH A 19 359 33 HOH HOH . I 5 HOH A 20 360 39 HOH HOH . I 5 HOH A 21 361 41 HOH HOH . I 5 HOH A 22 362 42 HOH HOH . I 5 HOH A 23 363 43 HOH HOH . I 5 HOH A 24 364 44 HOH HOH . I 5 HOH A 25 365 45 HOH HOH . I 5 HOH A 26 366 46 HOH HOH . I 5 HOH A 27 367 47 HOH HOH . I 5 HOH A 28 368 48 HOH HOH . I 5 HOH A 29 369 50 HOH HOH . I 5 HOH A 30 370 51 HOH HOH . I 5 HOH A 31 371 52 HOH HOH . I 5 HOH A 32 372 60 HOH HOH . I 5 HOH A 33 373 64 HOH HOH . I 5 HOH A 34 374 66 HOH HOH . I 5 HOH A 35 375 67 HOH HOH . I 5 HOH A 36 376 68 HOH HOH . I 5 HOH A 37 377 69 HOH HOH . I 5 HOH A 38 378 70 HOH HOH . I 5 HOH A 39 379 71 HOH HOH . I 5 HOH A 40 380 74 HOH HOH . I 5 HOH A 41 381 75 HOH HOH . I 5 HOH A 42 382 76 HOH HOH . I 5 HOH A 43 383 79 HOH HOH . I 5 HOH A 44 384 80 HOH HOH . I 5 HOH A 45 385 83 HOH HOH . I 5 HOH A 46 386 86 HOH HOH . I 5 HOH A 47 387 87 HOH HOH . I 5 HOH A 48 388 91 HOH HOH . I 5 HOH A 49 389 95 HOH HOH . I 5 HOH A 50 390 96 HOH HOH . I 5 HOH A 51 391 97 HOH HOH . I 5 HOH A 52 392 98 HOH HOH . I 5 HOH A 53 393 99 HOH HOH . I 5 HOH A 54 394 100 HOH HOH . I 5 HOH A 55 395 101 HOH HOH . I 5 HOH A 56 396 105 HOH HOH . I 5 HOH A 57 397 110 HOH HOH . I 5 HOH A 58 398 111 HOH HOH . I 5 HOH A 59 399 112 HOH HOH . I 5 HOH A 60 400 113 HOH HOH . I 5 HOH A 61 401 114 HOH HOH . I 5 HOH A 62 402 116 HOH HOH . I 5 HOH A 63 403 117 HOH HOH . I 5 HOH A 64 404 118 HOH HOH . I 5 HOH A 65 405 119 HOH HOH . I 5 HOH A 66 406 121 HOH HOH . I 5 HOH A 67 407 122 HOH HOH . I 5 HOH A 68 408 123 HOH HOH . I 5 HOH A 69 409 124 HOH HOH . I 5 HOH A 70 410 125 HOH HOH . I 5 HOH A 71 411 126 HOH HOH . J 5 HOH B 1 341 12 HOH HOH . J 5 HOH B 2 342 13 HOH HOH . J 5 HOH B 3 343 1 HOH HOH . J 5 HOH B 4 344 2 HOH HOH . J 5 HOH B 5 345 3 HOH HOH . J 5 HOH B 6 346 4 HOH HOH . J 5 HOH B 7 347 5 HOH HOH . J 5 HOH B 8 348 6 HOH HOH . J 5 HOH B 9 349 7 HOH HOH . J 5 HOH B 10 350 8 HOH HOH . J 5 HOH B 11 351 9 HOH HOH . J 5 HOH B 12 352 10 HOH HOH . J 5 HOH B 13 353 11 HOH HOH . J 5 HOH B 14 354 15 HOH HOH . J 5 HOH B 15 355 19 HOH HOH . J 5 HOH B 16 356 20 HOH HOH . J 5 HOH B 17 357 30 HOH HOH . J 5 HOH B 18 358 35 HOH HOH . J 5 HOH B 19 359 36 HOH HOH . J 5 HOH B 20 360 37 HOH HOH . J 5 HOH B 21 361 38 HOH HOH . J 5 HOH B 22 362 40 HOH HOH . J 5 HOH B 23 363 49 HOH HOH . J 5 HOH B 24 364 53 HOH HOH . J 5 HOH B 25 365 54 HOH HOH . J 5 HOH B 26 366 55 HOH HOH . J 5 HOH B 27 367 56 HOH HOH . J 5 HOH B 28 368 57 HOH HOH . J 5 HOH B 29 369 58 HOH HOH . J 5 HOH B 30 370 59 HOH HOH . J 5 HOH B 31 371 61 HOH HOH . J 5 HOH B 32 372 62 HOH HOH . J 5 HOH B 33 373 63 HOH HOH . J 5 HOH B 34 374 65 HOH HOH . J 5 HOH B 35 375 72 HOH HOH . J 5 HOH B 36 376 73 HOH HOH . J 5 HOH B 37 377 77 HOH HOH . J 5 HOH B 38 378 78 HOH HOH . J 5 HOH B 39 379 81 HOH HOH . J 5 HOH B 40 380 82 HOH HOH . J 5 HOH B 41 381 84 HOH HOH . J 5 HOH B 42 382 85 HOH HOH . J 5 HOH B 43 383 88 HOH HOH . J 5 HOH B 44 384 89 HOH HOH . J 5 HOH B 45 385 90 HOH HOH . J 5 HOH B 46 386 92 HOH HOH . J 5 HOH B 47 387 93 HOH HOH . J 5 HOH B 48 388 94 HOH HOH . J 5 HOH B 49 389 102 HOH HOH . J 5 HOH B 50 390 103 HOH HOH . J 5 HOH B 51 391 104 HOH HOH . J 5 HOH B 52 392 106 HOH HOH . J 5 HOH B 53 393 107 HOH HOH . J 5 HOH B 54 394 108 HOH HOH . J 5 HOH B 55 395 109 HOH HOH . J 5 HOH B 56 396 115 HOH HOH . J 5 HOH B 57 397 120 HOH HOH . J 5 HOH B 58 398 127 HOH HOH . J 5 HOH B 59 399 128 HOH HOH . J 5 HOH B 60 400 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . H 4 26.726 91.456 52.492 1 13.03 ? P AMP 340 B 1 HETATM 2 O O1P AMP . . . H 4 26.336 90.497 53.603 1 17.12 ? O1P AMP 340 B 1 HETATM 3 O O2P AMP . . . H 4 26.85 90.417 51.416 1 20.02 ? O2P AMP 340 B 1 HETATM 4 O O3P AMP . . . H 4 25.615 92.408 52.209 1 6.08 ? O3P AMP 340 B 1 HETATM 5 O O5' AMP . . . H 4 28.157 92.157 52.557 1 13.58 ? O5' AMP 340 B 1 HETATM 6 C C5' AMP . . . H 4 28.209 93.216 53.568 1 16.77 ? C5' AMP 340 B 1 HETATM 7 C C4' AMP . . . H 4 29.119 94.221 53.118 1 15.53 ? C4' AMP 340 B 1 HETATM 8 O O4' AMP . . . H 4 30.477 93.748 53.04 1 19.64 ? O4' AMP 340 B 1 HETATM 9 C C3' AMP . . . H 4 28.814 94.745 51.715 1 16.2 ? C3' AMP 340 B 1 HETATM 10 O O3' AMP . . . H 4 27.944 95.833 51.682 1 14.84 ? O3' AMP 340 B 1 HETATM 11 C C2' AMP . . . H 4 30.167 95.317 51.33 1 17.63 ? C2' AMP 340 B 1 HETATM 12 O O2' AMP . . . H 4 30.37 96.599 51.892 1 19.38 ? O2' AMP 340 B 1 HETATM 13 C C1' AMP . . . H 4 31.118 94.232 51.866 1 18.85 ? C1' AMP 340 B 1 HETATM 14 N N9 AMP . . . H 4 31.215 93.23 50.724 1 21.8 ? N9 AMP 340 B 1 HETATM 15 C C8 AMP . . . H 4 30.467 92.082 50.524 1 22.55 ? C8 AMP 340 B 1 HETATM 16 N N7 AMP . . . H 4 30.749 91.514 49.3 1 23.92 ? N7 AMP 340 B 1 HETATM 17 C C5 AMP . . . H 4 31.675 92.375 48.737 1 22.7 ? C5 AMP 340 B 1 HETATM 18 C C6 AMP . . . H 4 32.306 92.306 47.457 1 26.67 ? C6 AMP 340 B 1 HETATM 19 N N6 AMP . . . H 4 32.029 91.328 46.584 1 28.94 ? N6 AMP 340 B 1 HETATM 20 N N1 AMP . . . H 4 33.206 93.328 47.152 1 23.57 ? N1 AMP 340 B 1 HETATM 21 C C2 AMP . . . H 4 33.447 94.325 48.067 1 21.02 ? C2 AMP 340 B 1 HETATM 22 N N3 AMP . . . H 4 32.844 94.376 49.271 1 18.98 ? N3 AMP 340 B 1 HETATM 23 C C4 AMP . . . H 4 31.963 93.409 49.599 1 19.97 ? C4 AMP 340 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #