data_1FSS # _model_server_result.job_id 9KWLZU2qYYhGZsqf5USRJA _model_server_result.datetime_utc '2025-02-27 13:48:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fss # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":990}' # _entry.id 1FSS # _exptl.entry_id 1FSS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FSS _cell.length_a 87.39 _cell.length_b 115 _cell.length_c 67.47 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FSS _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 115 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 67 A CYS 67 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 254 A CYS 254 1_555 A SG CYS 265 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 402 A CYS 402 1_555 A SG CYS 521 A CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 3 B CYS 3 1_555 B SG CYS 22 B CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 B SG CYS 17 B CYS 17 1_555 B SG CYS 39 B CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf6 B SG CYS 41 B CYS 41 1_555 B SG CYS 52 B CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 B SG CYS 53 B CYS 53 1_555 B SG CYS 59 B CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 59 A ASN 59 1_555 C C1 NAG . A NAG 990 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? metalc ? metalc1 A OE2 GLU 49 A GLU 49 1_555 E ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc2 A OE1 GLU 49 A GLU 49 1_555 E ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc3 A OE2 GLU 163 A GLU 163 4_456 D ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc4 A OE1 GLU 163 A GLU 163 4_456 D ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc5 A OE1 GLU 260 A GLU 260 4_456 D ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc6 A NE2 HIS 264 A HIS 264 4_456 D ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc7 A OD2 ASP 285 A ASP 285 4_556 E ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc8 A OE1 GLU 350 A GLU 350 1_555 D ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc9 A OE2 GLU 350 A GLU 350 1_555 D ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc10 E ZN ZN . A ZN 902 1_555 B ND1 HIS 29 B HIS 29 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1FSS _atom_sites.fract_transf_matrix[1][1] 0.011443 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008696 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 990 990 NAG NAG . D 4 ZN A 1 901 901 ZN ZN . E 4 ZN A 1 902 902 ZN ZN . F 5 HOH A 1 702 702 HOH HOH . F 5 HOH A 2 703 703 HOH HOH . F 5 HOH A 3 704 704 HOH HOH . F 5 HOH A 4 706 706 HOH HOH . F 5 HOH A 5 707 707 HOH HOH . F 5 HOH A 6 708 708 HOH HOH . F 5 HOH A 7 709 709 HOH HOH . F 5 HOH A 8 710 710 HOH HOH . F 5 HOH A 9 711 711 HOH HOH . F 5 HOH A 10 712 712 HOH HOH . F 5 HOH A 11 713 713 HOH HOH . F 5 HOH A 12 714 714 HOH HOH . F 5 HOH A 13 715 715 HOH HOH . F 5 HOH A 14 716 716 HOH HOH . F 5 HOH A 15 717 717 HOH HOH . F 5 HOH A 16 718 718 HOH HOH . F 5 HOH A 17 720 720 HOH HOH . F 5 HOH A 18 721 721 HOH HOH . F 5 HOH A 19 722 722 HOH HOH . F 5 HOH A 20 723 723 HOH HOH . F 5 HOH A 21 724 724 HOH HOH . F 5 HOH A 22 725 725 HOH HOH . F 5 HOH A 23 727 727 HOH HOH . F 5 HOH A 24 728 728 HOH HOH . F 5 HOH A 25 729 729 HOH HOH . F 5 HOH A 26 730 730 HOH HOH . F 5 HOH A 27 731 731 HOH HOH . F 5 HOH A 28 732 732 HOH HOH . F 5 HOH A 29 733 733 HOH HOH . F 5 HOH A 30 734 734 HOH HOH . F 5 HOH A 31 735 735 HOH HOH . F 5 HOH A 32 800 800 HOH HOH . G 5 HOH B 1 701 701 HOH HOH . G 5 HOH B 2 705 705 HOH HOH . G 5 HOH B 3 719 719 HOH HOH . G 5 HOH B 4 726 726 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 39.707 11.948 13.548 1 77.9 ? C1 NAG 990 A 1 HETATM 2 C C2 NAG . . . C 3 38.303 11.798 12.94 1 77.9 ? C2 NAG 990 A 1 HETATM 3 C C3 NAG . . . C 3 38.298 10.659 11.883 1 77.9 ? C3 NAG 990 A 1 HETATM 4 C C4 NAG . . . C 3 39.488 10.779 10.925 1 77.9 ? C4 NAG 990 A 1 HETATM 5 C C5 NAG . . . C 3 40.795 10.893 11.709 1 77.9 ? C5 NAG 990 A 1 HETATM 6 C C6 NAG . . . C 3 42.024 11.044 10.792 1 77.9 ? C6 NAG 990 A 1 HETATM 7 C C7 NAG . . . C 3 36.465 10.526 14.071 1 77.9 ? C7 NAG 990 A 1 HETATM 8 C C8 NAG . . . C 3 35.576 10.449 15.308 1 77.9 ? C8 NAG 990 A 1 HETATM 9 N N2 NAG . . . C 3 37.339 11.535 14.039 1 77.9 ? N2 NAG 990 A 1 HETATM 10 O O3 NAG . . . C 3 37.111 10.72 11.128 1 77.9 ? O3 NAG 990 A 1 HETATM 11 O O4 NAG . . . C 3 39.539 9.637 10.086 1 77.9 ? O4 NAG 990 A 1 HETATM 12 O O5 NAG . . . C 3 40.708 12.041 12.538 1 77.9 ? O5 NAG 990 A 1 HETATM 13 O O6 NAG . . . C 3 41.634 11.185 9.438 1 77.9 ? O6 NAG 990 A 1 HETATM 14 O O7 NAG . . . C 3 36.337 9.69 13.184 1 77.9 ? O7 NAG 990 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #