data_1FTH # _model_server_result.job_id Qi0QY52FQNuYX4alyYniag _model_server_result.datetime_utc '2025-03-04 07:27:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fth # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":5001}' # _entry.id 1FTH # _exptl.entry_id 1FTH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3'-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.745 _cell.angle_gamma 90 _cell.entry_id 1FTH _cell.length_a 120.188 _cell.length_b 62.273 _cell.length_c 51.673 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FTH _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id A3P _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-3'-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P A3P doub 1 n n P1 O2P A3P sing 2 n n P1 O3P A3P sing 3 n n P1 O3' A3P sing 4 n n O2P HOP2 A3P sing 5 n n O3P HOP3 A3P sing 6 n n P2 O4P A3P doub 7 n n P2 O5P A3P sing 8 n n P2 O6P A3P sing 9 n n P2 O5' A3P sing 10 n n O5P HOP5 A3P sing 11 n n O6P HOP6 A3P sing 12 n n O5' C5' A3P sing 13 n n C5' C4' A3P sing 14 n n C5' "H5'1" A3P sing 15 n n C5' "H5'2" A3P sing 16 n n C4' O4' A3P sing 17 n n C4' C3' A3P sing 18 n n C4' H4' A3P sing 19 n n O4' C1' A3P sing 20 n n C3' O3' A3P sing 21 n n C3' C2' A3P sing 22 n n C3' H3' A3P sing 23 n n C2' O2' A3P sing 24 n n C2' C1' A3P sing 25 n n C2' H2' A3P sing 26 n n O2' HO2' A3P sing 27 n n C1' N9 A3P sing 28 n n C1' H1' A3P sing 29 n n N9 C8 A3P sing 30 n y N9 C4 A3P sing 31 n y C8 N7 A3P doub 32 n y C8 H8 A3P sing 33 n n N7 C5 A3P sing 34 n y C5 C6 A3P sing 35 n y C5 C4 A3P doub 36 n y C6 N6 A3P sing 37 n n C6 N1 A3P doub 38 n y N6 HN61 A3P sing 39 n n N6 HN62 A3P sing 40 n n N1 C2 A3P sing 41 n y C2 N3 A3P doub 42 n y C2 H2 A3P sing 43 n n N3 C4 A3P sing 44 n y # _atom_sites.entry_id 1FTH _atom_sites.fract_transf_matrix[1][1] 0.00832 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00128 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016058 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 A3P B 1 5001 5001 A3P A3P . E 2 A3P C 1 5002 5002 A3P A3P . F 3 HOH A 1 4001 4001 HOH HOH . F 3 HOH A 2 4002 4002 HOH HOH . F 3 HOH A 3 4004 4004 HOH HOH . F 3 HOH A 4 4008 4008 HOH HOH . F 3 HOH A 5 4009 4009 HOH HOH . F 3 HOH A 6 4011 4011 HOH HOH . F 3 HOH A 7 4013 4013 HOH HOH . F 3 HOH A 8 4014 4014 HOH HOH . F 3 HOH A 9 4015 4015 HOH HOH . F 3 HOH A 10 4017 4017 HOH HOH . F 3 HOH A 11 4018 4018 HOH HOH . F 3 HOH A 12 4020 4020 HOH HOH . F 3 HOH A 13 4025 4025 HOH HOH . F 3 HOH A 14 4029 4029 HOH HOH . F 3 HOH A 15 4036 4036 HOH HOH . F 3 HOH A 16 4038 4038 HOH HOH . F 3 HOH A 17 4039 4039 HOH HOH . F 3 HOH A 18 4041 4041 HOH HOH . F 3 HOH A 19 4049 4049 HOH HOH . F 3 HOH A 20 4050 4050 HOH HOH . F 3 HOH A 21 4052 4052 HOH HOH . F 3 HOH A 22 4055 4055 HOH HOH . F 3 HOH A 23 4061 4061 HOH HOH . F 3 HOH A 24 4063 4063 HOH HOH . F 3 HOH A 25 4064 4064 HOH HOH . F 3 HOH A 26 4068 4068 HOH HOH . F 3 HOH A 27 4069 4069 HOH HOH . F 3 HOH A 28 4072 4072 HOH HOH . F 3 HOH A 29 4076 4076 HOH HOH . F 3 HOH A 30 4078 4078 HOH HOH . F 3 HOH A 31 4080 4080 HOH HOH . F 3 HOH A 32 4085 4085 HOH HOH . F 3 HOH A 33 4086 4086 HOH HOH . F 3 HOH A 34 4087 4087 HOH HOH . F 3 HOH A 35 4094 4094 HOH HOH . F 3 HOH A 36 4095 4095 HOH HOH . F 3 HOH A 37 4096 4096 HOH HOH . F 3 HOH A 38 4097 4097 HOH HOH . F 3 HOH A 39 4098 4098 HOH HOH . F 3 HOH A 40 4102 4102 HOH HOH . F 3 HOH A 41 4103 4103 HOH HOH . F 3 HOH A 42 4104 4104 HOH HOH . F 3 HOH A 43 4105 4105 HOH HOH . F 3 HOH A 44 4108 4108 HOH HOH . F 3 HOH A 45 4109 4109 HOH HOH . F 3 HOH A 46 4110 4110 HOH HOH . F 3 HOH A 47 4113 4113 HOH HOH . F 3 HOH A 48 4116 4116 HOH HOH . F 3 HOH A 49 4117 4117 HOH HOH . F 3 HOH A 50 4119 4119 HOH HOH . F 3 HOH A 51 4120 4120 HOH HOH . F 3 HOH A 52 4124 4124 HOH HOH . F 3 HOH A 53 4127 4127 HOH HOH . F 3 HOH A 54 4130 4130 HOH HOH . F 3 HOH A 55 4131 4131 HOH HOH . F 3 HOH A 56 4133 4133 HOH HOH . F 3 HOH A 57 4134 4134 HOH HOH . F 3 HOH A 58 4135 4135 HOH HOH . F 3 HOH A 59 4136 4136 HOH HOH . F 3 HOH A 60 4137 4137 HOH HOH . F 3 HOH A 61 4138 4138 HOH HOH . F 3 HOH A 62 4140 4140 HOH HOH . F 3 HOH A 63 4143 4143 HOH HOH . F 3 HOH A 64 4145 4145 HOH HOH . F 3 HOH A 65 4146 4146 HOH HOH . F 3 HOH A 66 4148 4148 HOH HOH . F 3 HOH A 67 4149 4149 HOH HOH . F 3 HOH A 68 4150 4150 HOH HOH . F 3 HOH A 69 4156 4156 HOH HOH . F 3 HOH A 70 4157 4157 HOH HOH . F 3 HOH A 71 4158 4158 HOH HOH . F 3 HOH A 72 4159 4159 HOH HOH . F 3 HOH A 73 4160 4160 HOH HOH . F 3 HOH A 74 4162 4162 HOH HOH . F 3 HOH A 75 4163 4163 HOH HOH . F 3 HOH A 76 4164 4164 HOH HOH . F 3 HOH A 77 4169 4169 HOH HOH . F 3 HOH A 78 4173 4173 HOH HOH . F 3 HOH A 79 4174 4174 HOH HOH . F 3 HOH A 80 4175 4175 HOH HOH . F 3 HOH A 81 4176 4176 HOH HOH . F 3 HOH A 82 4177 4177 HOH HOH . F 3 HOH A 83 4178 4178 HOH HOH . F 3 HOH A 84 4179 4179 HOH HOH . F 3 HOH A 85 4185 4185 HOH HOH . F 3 HOH A 86 4186 4186 HOH HOH . F 3 HOH A 87 4187 4187 HOH HOH . F 3 HOH A 88 4188 4188 HOH HOH . F 3 HOH A 89 4189 4189 HOH HOH . F 3 HOH A 90 4190 4190 HOH HOH . F 3 HOH A 91 4191 4191 HOH HOH . F 3 HOH A 92 4192 4192 HOH HOH . F 3 HOH A 93 4193 4193 HOH HOH . F 3 HOH A 94 4194 4194 HOH HOH . F 3 HOH A 95 4195 4195 HOH HOH . F 3 HOH A 96 4196 4196 HOH HOH . F 3 HOH A 97 4197 4197 HOH HOH . F 3 HOH A 98 4198 4198 HOH HOH . F 3 HOH A 99 4214 4214 HOH HOH . G 3 HOH B 1 4003 4003 HOH HOH . G 3 HOH B 2 4005 4005 HOH HOH . G 3 HOH B 3 4006 4006 HOH HOH . G 3 HOH B 4 4007 4007 HOH HOH . G 3 HOH B 5 4010 4010 HOH HOH . G 3 HOH B 6 4019 4019 HOH HOH . G 3 HOH B 7 4023 4023 HOH HOH . G 3 HOH B 8 4026 4026 HOH HOH . G 3 HOH B 9 4028 4028 HOH HOH . G 3 HOH B 10 4030 4030 HOH HOH . G 3 HOH B 11 4032 4032 HOH HOH . G 3 HOH B 12 4033 4033 HOH HOH . G 3 HOH B 13 4035 4035 HOH HOH . G 3 HOH B 14 4037 4037 HOH HOH . G 3 HOH B 15 4040 4040 HOH HOH . G 3 HOH B 16 4044 4044 HOH HOH . G 3 HOH B 17 4046 4046 HOH HOH . G 3 HOH B 18 4047 4047 HOH HOH . G 3 HOH B 19 4048 4048 HOH HOH . G 3 HOH B 20 4051 4051 HOH HOH . G 3 HOH B 21 4053 4053 HOH HOH . G 3 HOH B 22 4054 4054 HOH HOH . G 3 HOH B 23 4056 4056 HOH HOH . G 3 HOH B 24 4057 4057 HOH HOH . G 3 HOH B 25 4058 4058 HOH HOH . G 3 HOH B 26 4059 4059 HOH HOH . G 3 HOH B 27 4067 4067 HOH HOH . G 3 HOH B 28 4071 4071 HOH HOH . G 3 HOH B 29 4074 4074 HOH HOH . G 3 HOH B 30 4077 4077 HOH HOH . G 3 HOH B 31 4079 4079 HOH HOH . G 3 HOH B 32 4081 4081 HOH HOH . G 3 HOH B 33 4082 4082 HOH HOH . G 3 HOH B 34 4083 4083 HOH HOH . G 3 HOH B 35 4084 4084 HOH HOH . G 3 HOH B 36 4088 4088 HOH HOH . G 3 HOH B 37 4089 4089 HOH HOH . G 3 HOH B 38 4090 4090 HOH HOH . G 3 HOH B 39 4091 4091 HOH HOH . G 3 HOH B 40 4092 4092 HOH HOH . G 3 HOH B 41 4093 4093 HOH HOH . G 3 HOH B 42 4099 4099 HOH HOH . G 3 HOH B 43 4100 4100 HOH HOH . G 3 HOH B 44 4106 4106 HOH HOH . G 3 HOH B 45 4111 4111 HOH HOH . G 3 HOH B 46 4112 4112 HOH HOH . G 3 HOH B 47 4118 4118 HOH HOH . G 3 HOH B 48 4122 4122 HOH HOH . G 3 HOH B 49 4123 4123 HOH HOH . G 3 HOH B 50 4125 4125 HOH HOH . G 3 HOH B 51 4128 4128 HOH HOH . G 3 HOH B 52 4129 4129 HOH HOH . G 3 HOH B 53 4139 4139 HOH HOH . G 3 HOH B 54 4142 4142 HOH HOH . G 3 HOH B 55 4147 4147 HOH HOH . G 3 HOH B 56 4151 4151 HOH HOH . G 3 HOH B 57 4154 4154 HOH HOH . G 3 HOH B 58 4155 4155 HOH HOH . G 3 HOH B 59 4165 4165 HOH HOH . G 3 HOH B 60 4166 4166 HOH HOH . G 3 HOH B 61 4167 4167 HOH HOH . G 3 HOH B 62 4170 4170 HOH HOH . G 3 HOH B 63 4171 4171 HOH HOH . G 3 HOH B 64 4180 4180 HOH HOH . G 3 HOH B 65 4181 4181 HOH HOH . G 3 HOH B 66 4182 4182 HOH HOH . G 3 HOH B 67 4199 4199 HOH HOH . G 3 HOH B 68 4200 4200 HOH HOH . G 3 HOH B 69 4201 4201 HOH HOH . G 3 HOH B 70 4202 4202 HOH HOH . G 3 HOH B 71 4203 4203 HOH HOH . G 3 HOH B 72 4204 4204 HOH HOH . G 3 HOH B 73 4205 4205 HOH HOH . G 3 HOH B 74 4213 4213 HOH HOH . H 3 HOH C 1 4012 4012 HOH HOH . H 3 HOH C 2 4016 4016 HOH HOH . H 3 HOH C 3 4021 4021 HOH HOH . H 3 HOH C 4 4022 4022 HOH HOH . H 3 HOH C 5 4024 4024 HOH HOH . H 3 HOH C 6 4027 4027 HOH HOH . H 3 HOH C 7 4031 4031 HOH HOH . H 3 HOH C 8 4034 4034 HOH HOH . H 3 HOH C 9 4042 4042 HOH HOH . H 3 HOH C 10 4043 4043 HOH HOH . H 3 HOH C 11 4045 4045 HOH HOH . H 3 HOH C 12 4060 4060 HOH HOH . H 3 HOH C 13 4062 4062 HOH HOH . H 3 HOH C 14 4065 4065 HOH HOH . H 3 HOH C 15 4066 4066 HOH HOH . H 3 HOH C 16 4070 4070 HOH HOH . H 3 HOH C 17 4073 4073 HOH HOH . H 3 HOH C 18 4075 4075 HOH HOH . H 3 HOH C 19 4101 4101 HOH HOH . H 3 HOH C 20 4107 4107 HOH HOH . H 3 HOH C 21 4114 4114 HOH HOH . H 3 HOH C 22 4115 4115 HOH HOH . H 3 HOH C 23 4121 4121 HOH HOH . H 3 HOH C 24 4126 4126 HOH HOH . H 3 HOH C 25 4132 4132 HOH HOH . H 3 HOH C 26 4141 4141 HOH HOH . H 3 HOH C 27 4144 4144 HOH HOH . H 3 HOH C 28 4152 4152 HOH HOH . H 3 HOH C 29 4153 4153 HOH HOH . H 3 HOH C 30 4161 4161 HOH HOH . H 3 HOH C 31 4168 4168 HOH HOH . H 3 HOH C 32 4183 4183 HOH HOH . H 3 HOH C 33 4184 4184 HOH HOH . H 3 HOH C 34 4206 4206 HOH HOH . H 3 HOH C 35 4207 4207 HOH HOH . H 3 HOH C 36 4208 4208 HOH HOH . H 3 HOH C 37 4209 4209 HOH HOH . H 3 HOH C 38 4210 4210 HOH HOH . H 3 HOH C 39 4211 4211 HOH HOH . H 3 HOH C 40 4212 4212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 A3P . . . D 2 11.793 8.89 27.153 1 39.03 ? P1 A3P 5001 B 1 HETATM 2 O O1P A3P . . . D 2 10.704 7.813 27.428 1 38.33 ? O1P A3P 5001 B 1 HETATM 3 O O2P A3P . . . D 2 13.132 8.456 27.811 1 37.89 ? O2P A3P 5001 B 1 HETATM 4 O O3P A3P . . . D 2 11.335 10.27 27.727 1 38.47 ? O3P A3P 5001 B 1 HETATM 5 P P2 A3P . . . D 2 10.59 10.301 20.038 1 42.78 ? P2 A3P 5001 B 1 HETATM 6 O O4P A3P . . . D 2 10.502 11.856 20.091 1 42.15 ? O4P A3P 5001 B 1 HETATM 7 O O5P A3P . . . D 2 9.206 9.705 19.706 1 42.7 ? O5P A3P 5001 B 1 HETATM 8 O O6P A3P . . . D 2 11.625 9.857 18.958 1 42.46 ? O6P A3P 5001 B 1 HETATM 9 O O5' A3P . . . D 2 11.097 9.701 21.424 1 40.68 ? O5' A3P 5001 B 1 HETATM 10 C C5' A3P . . . D 2 11.437 10.535 22.603 1 38.41 ? C5' A3P 5001 B 1 HETATM 11 C C4' A3P . . . D 2 12.686 9.957 23.335 1 36.82 ? C4' A3P 5001 B 1 HETATM 12 O O4' A3P . . . D 2 13.848 10.686 22.92 1 36.03 ? O4' A3P 5001 B 1 HETATM 13 C C3' A3P . . . D 2 12.653 10.099 24.87 1 36.67 ? C3' A3P 5001 B 1 HETATM 14 O O3' A3P . . . D 2 11.976 8.971 25.57 1 37.31 ? O3' A3P 5001 B 1 HETATM 15 C C2' A3P . . . D 2 14.141 10.11 25.224 1 35.7 ? C2' A3P 5001 B 1 HETATM 16 O O2' A3P . . . D 2 14.631 8.784 25.491 1 35.5 ? O2' A3P 5001 B 1 HETATM 17 C C1' A3P . . . D 2 14.83 10.703 23.979 1 35.3 ? C1' A3P 5001 B 1 HETATM 18 N N9 A3P . . . D 2 15.583 11.96 24.157 1 34.23 ? N9 A3P 5001 B 1 HETATM 19 C C8 A3P . . . D 2 15.031 13.103 24.683 1 33.76 ? C8 A3P 5001 B 1 HETATM 20 N N7 A3P . . . D 2 15.978 14.09 24.723 1 33.36 ? N7 A3P 5001 B 1 HETATM 21 C C5 A3P . . . D 2 17.134 13.556 24.215 1 33.72 ? C5 A3P 5001 B 1 HETATM 22 C C6 A3P . . . D 2 18.408 14.006 23.991 1 33.53 ? C6 A3P 5001 B 1 HETATM 23 N N6 A3P . . . D 2 18.756 15.278 24.301 1 33.44 ? N6 A3P 5001 B 1 HETATM 24 N N1 A3P . . . D 2 19.354 13.196 23.456 1 33.03 ? N1 A3P 5001 B 1 HETATM 25 C C2 A3P . . . D 2 19.088 11.91 23.12 1 33.21 ? C2 A3P 5001 B 1 HETATM 26 N N3 A3P . . . D 2 17.868 11.378 23.304 1 33.65 ? N3 A3P 5001 B 1 HETATM 27 C C4 A3P . . . D 2 16.903 12.203 23.85 1 33.62 ? C4 A3P 5001 B 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #