data_1FUF # _model_server_result.job_id B7W0F3r0_vd6OHbalBx1Tw _model_server_result.datetime_utc '2025-03-04 15:14:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fuf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":98}' # _entry.id 1FUF # _exptl.entry_id 1FUF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 202.34 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPERMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 120.69 _cell.angle_gamma 90 _cell.entry_id 1FUF _cell.length_a 60.06 _cell.length_b 29.1 _cell.length_c 52.57 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FUF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' A 12 A A 12 1_555 A P CBR 13 A CBR 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? covale ? covale2 A O3' CBR 13 A CBR 13 1_555 A P C 14 A C 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? covale ? covale3 B O3' A 12 B A 26 1_555 B P CBR 13 B CBR 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale4 B O3' CBR 13 B CBR 27 1_555 B P C 14 B C 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.597 ? metalc ? metalc1 E O HOH . A HOH 92 1_555 C MG MG . A MG 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc2 E O HOH . A HOH 93 1_555 C MG MG . A MG 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc3 E O HOH . A HOH 96 1_555 C MG MG . A MG 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc4 C MG MG . A MG 97 1_555 F O HOH . B HOH 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc5 C MG MG . A MG 97 1_555 F O HOH . B HOH 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? hydrog WATSON-CRICK hydrog1 A N1 G 1 A G 1 1_555 B N3 C 14 B C 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 G 1 A G 1 1_555 B O2 C 14 B C 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 G 1 A G 1 1_555 B N4 C 14 B C 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 G 2 A G 2 1_555 B N3 CBR 13 B CBR 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 G 2 A G 2 1_555 B O2 CBR 13 B CBR 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 G 2 A G 2 1_555 B N4 CBR 13 B CBR 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 U 3 A U 3 1_555 B N1 A 12 B A 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O4 U 3 A U 3 1_555 B N6 A 12 B A 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED HOOGSTEEN' hydrog9 A N6 A 4 A A 4 1_555 B O2 U 6 B U 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED HOOGSTEEN' hydrog10 A N7 A 4 A A 4 1_555 B N3 U 6 B U 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 A 4 A A 4 1_555 B N3 U 11 B U 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N6 A 4 A A 4 1_555 B O4 U 11 B U 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog13 A N3 U 5 A U 5 1_555 B O6 G 10 B G 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog14 A O2 U 5 A U 5 1_555 B N1 G 10 B G 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED HOOGSTEEN' hydrog15 A N3 U 6 A U 6 1_555 B N7 A 4 B A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED HOOGSTEEN' hydrog16 A O2 U 6 A U 6 1_555 B N6 A 4 B A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 C 8 A C 8 1_555 B N1 G 9 B G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N4 C 8 A C 8 1_555 B O6 G 9 B G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O2 C 8 A C 8 1_555 B N2 G 9 B G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 G 9 A G 9 1_555 B N3 C 8 B C 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N2 G 9 A G 9 1_555 B O2 C 8 B C 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O6 G 9 A G 9 1_555 B N4 C 8 B C 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog23 A N1 G 10 A G 10 1_555 B O2 U 5 B U 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog24 A O6 G 10 A G 10 1_555 B N3 U 5 B U 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 U 11 A U 11 1_555 B N1 A 4 B A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O4 U 11 A U 11 1_555 B N6 A 4 B A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N1 A 12 A A 12 1_555 B N3 U 3 B U 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N6 A 12 A A 12 1_555 B O4 U 3 B U 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N3 CBR 13 A CBR 13 1_555 B N1 G 2 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N4 CBR 13 A CBR 13 1_555 B O6 G 2 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A O2 CBR 13 A CBR 13 1_555 B N2 G 2 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A N3 C 14 A C 14 1_555 B N1 G 1 B G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N4 C 14 A C 14 1_555 B O6 G 1 B G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A O2 C 14 A C 14 1_555 B N2 G 1 B G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H26 N4' _chem_comp.formula_weight 202.34 _chem_comp.id SPM _chem_comp.mon_nstd_flag . _chem_comp.name SPERMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 SPM sing 153 n n N1 HN11 SPM sing 154 n n N1 HN12 SPM sing 155 n n C2 C3 SPM sing 156 n n C2 H21 SPM sing 157 n n C2 H22 SPM sing 158 n n C3 C4 SPM sing 159 n n C3 H31 SPM sing 160 n n C3 H32 SPM sing 161 n n C4 N5 SPM sing 162 n n C4 H41 SPM sing 163 n n C4 H42 SPM sing 164 n n N5 C6 SPM sing 165 n n N5 HN5 SPM sing 166 n n C6 C7 SPM sing 167 n n C6 H61 SPM sing 168 n n C6 H62 SPM sing 169 n n C7 C8 SPM sing 170 n n C7 H71 SPM sing 171 n n C7 H72 SPM sing 172 n n C8 C9 SPM sing 173 n n C8 H81 SPM sing 174 n n C8 H82 SPM sing 175 n n C9 N10 SPM sing 176 n n C9 H91 SPM sing 177 n n C9 H92 SPM sing 178 n n N10 C11 SPM sing 179 n n N10 HN0 SPM sing 180 n n C11 C12 SPM sing 181 n n C11 H111 SPM sing 182 n n C11 H112 SPM sing 183 n n C12 C13 SPM sing 184 n n C12 H121 SPM sing 185 n n C12 H122 SPM sing 186 n n C13 N14 SPM sing 187 n n C13 H131 SPM sing 188 n n C13 H132 SPM sing 189 n n N14 HN41 SPM sing 190 n n N14 HN42 SPM sing 191 n n # _atom_sites.entry_id 1FUF _atom_sites.fract_transf_matrix[1][1] 0.01665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009882 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034364 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02212 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 97 97 MG MG . D 3 SPM B 1 98 98 SPM SPM . E 4 HOH A 1 30 30 HOH HOH . E 4 HOH A 2 31 31 HOH HOH . E 4 HOH A 3 34 34 HOH HOH . E 4 HOH A 4 35 35 HOH HOH . E 4 HOH A 5 36 36 HOH HOH . E 4 HOH A 6 38 38 HOH HOH . E 4 HOH A 7 39 39 HOH HOH . E 4 HOH A 8 40 40 HOH HOH . E 4 HOH A 9 43 43 HOH HOH . E 4 HOH A 10 44 44 HOH HOH . E 4 HOH A 11 48 48 HOH HOH . E 4 HOH A 12 50 50 HOH HOH . E 4 HOH A 13 53 53 HOH HOH . E 4 HOH A 14 54 54 HOH HOH . E 4 HOH A 15 56 56 HOH HOH . E 4 HOH A 16 57 57 HOH HOH . E 4 HOH A 17 58 58 HOH HOH . E 4 HOH A 18 62 62 HOH HOH . E 4 HOH A 19 63 63 HOH HOH . E 4 HOH A 20 64 64 HOH HOH . E 4 HOH A 21 65 65 HOH HOH . E 4 HOH A 22 66 66 HOH HOH . E 4 HOH A 23 67 67 HOH HOH . E 4 HOH A 24 69 69 HOH HOH . E 4 HOH A 25 70 70 HOH HOH . E 4 HOH A 26 71 71 HOH HOH . E 4 HOH A 27 72 72 HOH HOH . E 4 HOH A 28 73 73 HOH HOH . E 4 HOH A 29 74 74 HOH HOH . E 4 HOH A 30 78 78 HOH HOH . E 4 HOH A 31 79 79 HOH HOH . E 4 HOH A 32 80 80 HOH HOH . E 4 HOH A 33 84 84 HOH HOH . E 4 HOH A 34 86 86 HOH HOH . E 4 HOH A 35 88 88 HOH HOH . E 4 HOH A 36 92 92 HOH HOH . E 4 HOH A 37 93 93 HOH HOH . E 4 HOH A 38 96 96 HOH HOH . F 4 HOH B 1 29 29 HOH HOH . F 4 HOH B 2 32 32 HOH HOH . F 4 HOH B 3 33 33 HOH HOH . F 4 HOH B 4 37 37 HOH HOH . F 4 HOH B 5 41 41 HOH HOH . F 4 HOH B 6 42 42 HOH HOH . F 4 HOH B 7 45 45 HOH HOH . F 4 HOH B 8 46 46 HOH HOH . F 4 HOH B 9 47 47 HOH HOH . F 4 HOH B 10 49 49 HOH HOH . F 4 HOH B 11 51 51 HOH HOH . F 4 HOH B 12 52 52 HOH HOH . F 4 HOH B 13 55 55 HOH HOH . F 4 HOH B 14 59 59 HOH HOH . F 4 HOH B 15 60 60 HOH HOH . F 4 HOH B 16 61 61 HOH HOH . F 4 HOH B 17 68 68 HOH HOH . F 4 HOH B 18 75 75 HOH HOH . F 4 HOH B 19 76 76 HOH HOH . F 4 HOH B 20 77 77 HOH HOH . F 4 HOH B 21 81 81 HOH HOH . F 4 HOH B 22 82 82 HOH HOH . F 4 HOH B 23 83 83 HOH HOH . F 4 HOH B 24 85 85 HOH HOH . F 4 HOH B 25 87 87 HOH HOH . F 4 HOH B 26 89 89 HOH HOH . F 4 HOH B 27 90 90 HOH HOH . F 4 HOH B 28 91 91 HOH HOH . F 4 HOH B 29 94 94 HOH HOH . F 4 HOH B 30 95 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 SPM . . . D 3 -7.054 1.06 9.215 1 34.75 ? N1 SPM 98 B 1 HETATM 2 C C2 SPM . . . D 3 -5.661 1.69 9.189 1 37.94 ? C2 SPM 98 B 1 HETATM 3 C C3 SPM . . . D 3 -4.801 0.785 9.994 1 36.43 ? C3 SPM 98 B 1 HETATM 4 C C4 SPM . . . D 3 -3.343 1.207 10.076 1 36.64 ? C4 SPM 98 B 1 HETATM 5 N N5 SPM . . . D 3 -2.479 -0.002 10.14 1 32.98 ? N5 SPM 98 B 1 HETATM 6 C C6 SPM . . . D 3 -1.003 0.429 10.214 1 36.66 ? C6 SPM 98 B 1 HETATM 7 C C7 SPM . . . D 3 -0.276 -0.938 10.632 1 32.53 ? C7 SPM 98 B 1 HETATM 8 C C8 SPM . . . D 3 1.006 -0.843 10.375 1 34.79 ? C8 SPM 98 B 1 HETATM 9 C C9 SPM . . . D 3 1.398 -2.38 10.782 1 37.16 ? C9 SPM 98 B 1 HETATM 10 N N10 SPM . . . D 3 2.862 -2.387 10.227 1 38.65 ? N10 SPM 98 B 1 HETATM 11 C C11 SPM . . . D 3 3.615 -3.759 10.45 1 37.6 ? C11 SPM 98 B 1 HETATM 12 C C12 SPM . . . D 3 5.112 -3.556 9.829 1 34.3 ? C12 SPM 98 B 1 HETATM 13 C C13 SPM . . . D 3 5.487 -4.93 9.355 1 35.97 ? C13 SPM 98 B 1 HETATM 14 N N14 SPM . . . D 3 6.41 -4.708 8.18 1 32.51 ? N14 SPM 98 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #