data_1FUT # _model_server_result.job_id j3cpIA362D7KU_KkxQnAVg _model_server_result.datetime_utc '2024-11-26 17:02:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fut # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":108}' # _entry.id 1FUT # _exptl.entry_id 1FUT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-2'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1FUT _cell.length_a 40.16 _cell.length_b 40.16 _cell.length_c 120.85 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FUT _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 102 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 24 A CYS 24 1_555 A SG CYS 83 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? covale ? covale1 A C PCA 1 A PCA 1 1_555 A N SER 2 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 2GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-2'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 2GP doub 1 n n P O2P 2GP sing 2 n n P O3P 2GP sing 3 n n P O2' 2GP sing 4 n n O2P HOP2 2GP sing 5 n n O3P HOP3 2GP sing 6 n n O5' C5' 2GP sing 7 n n O5' HO5' 2GP sing 8 n n C5' C4' 2GP sing 9 n n C5' "H5'1" 2GP sing 10 n n C5' "H5'2" 2GP sing 11 n n C4' O4' 2GP sing 12 n n C4' C3' 2GP sing 13 n n C4' H4' 2GP sing 14 n n O4' C1' 2GP sing 15 n n C3' O3' 2GP sing 16 n n C3' C2' 2GP sing 17 n n C3' H3' 2GP sing 18 n n O3' HO3' 2GP sing 19 n n C2' O2' 2GP sing 20 n n C2' C1' 2GP sing 21 n n C2' H2' 2GP sing 22 n n C1' N9 2GP sing 23 n n C1' H1' 2GP sing 24 n n N9 C8 2GP sing 25 n y N9 C4 2GP sing 26 n y C8 N7 2GP doub 27 n y C8 H8 2GP sing 28 n n N7 C5 2GP sing 29 n y C5 C6 2GP sing 30 n n C5 C4 2GP doub 31 n y C6 O6 2GP doub 32 n n C6 N1 2GP sing 33 n n N1 C2 2GP sing 34 n n N1 HN1 2GP sing 35 n n C2 N2 2GP sing 36 n n C2 N3 2GP doub 37 n n N2 HN21 2GP sing 38 n n N2 HN22 2GP sing 39 n n N3 C4 2GP sing 40 n n # _atom_sites.entry_id 1FUT _atom_sites.fract_transf_matrix[1][1] 0.0249 _atom_sites.fract_transf_matrix[1][2] 0.014376 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2GP A 1 108 108 2GP 2GP . C 3 HOH A 1 109 109 HOH HOH . C 3 HOH A 2 110 110 HOH HOH . C 3 HOH A 3 111 111 HOH HOH . C 3 HOH A 4 112 112 HOH HOH . C 3 HOH A 5 113 113 HOH HOH . C 3 HOH A 6 114 114 HOH HOH . C 3 HOH A 7 115 115 HOH HOH . C 3 HOH A 8 116 116 HOH HOH . C 3 HOH A 9 117 117 HOH HOH . C 3 HOH A 10 118 118 HOH HOH . C 3 HOH A 11 119 119 HOH HOH . C 3 HOH A 12 120 120 HOH HOH . C 3 HOH A 13 121 121 HOH HOH . C 3 HOH A 14 122 122 HOH HOH . C 3 HOH A 15 123 123 HOH HOH . C 3 HOH A 16 124 124 HOH HOH . C 3 HOH A 17 125 125 HOH HOH . C 3 HOH A 18 126 126 HOH HOH . C 3 HOH A 19 127 127 HOH HOH . C 3 HOH A 20 128 128 HOH HOH . C 3 HOH A 21 129 129 HOH HOH . C 3 HOH A 22 130 130 HOH HOH . C 3 HOH A 23 131 131 HOH HOH . C 3 HOH A 24 132 132 HOH HOH . C 3 HOH A 25 133 133 HOH HOH . C 3 HOH A 26 134 134 HOH HOH . C 3 HOH A 27 135 135 HOH HOH . C 3 HOH A 28 136 136 HOH HOH . C 3 HOH A 29 137 137 HOH HOH . C 3 HOH A 30 138 138 HOH HOH . C 3 HOH A 31 139 139 HOH HOH . C 3 HOH A 32 140 140 HOH HOH . C 3 HOH A 33 141 141 HOH HOH . C 3 HOH A 34 142 142 HOH HOH . C 3 HOH A 35 143 143 HOH HOH . C 3 HOH A 36 144 144 HOH HOH . C 3 HOH A 37 145 145 HOH HOH . C 3 HOH A 38 146 146 HOH HOH . C 3 HOH A 39 147 147 HOH HOH . C 3 HOH A 40 148 148 HOH HOH . C 3 HOH A 41 149 149 HOH HOH . C 3 HOH A 42 150 150 HOH HOH . C 3 HOH A 43 151 151 HOH HOH . C 3 HOH A 44 152 152 HOH HOH . C 3 HOH A 45 153 153 HOH HOH . C 3 HOH A 46 154 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 2GP . . . B 2 -1.934 15.246 10.018 1 31.17 ? P 2GP 108 A 1 HETATM 2 O O1P 2GP . . . B 2 -2.929 16.051 10.88 1 33.08 ? O1P 2GP 108 A 1 HETATM 3 O O2P 2GP . . . B 2 -1.196 16.216 9.103 1 32.51 ? O2P 2GP 108 A 1 HETATM 4 O O3P 2GP . . . B 2 -2.735 14.168 9.354 1 32.4 ? O3P 2GP 108 A 1 HETATM 5 O O5' 2GP . . . B 2 1.757 17.748 11.756 1 34.35 ? O5' 2GP 108 A 1 HETATM 6 C C5' 2GP . . . B 2 2.757 16.769 12.004 1 33.34 ? C5' 2GP 108 A 1 HETATM 7 C C4' 2GP . . . B 2 2.552 15.434 11.334 1 32.96 ? C4' 2GP 108 A 1 HETATM 8 O O4' 2GP . . . B 2 2.346 14.378 12.394 1 32.09 ? O4' 2GP 108 A 1 HETATM 9 C C3' 2GP . . . B 2 1.393 15.296 10.315 1 32.03 ? C3' 2GP 108 A 1 HETATM 10 O O3' 2GP . . . B 2 1.61 14.241 9.392 1 31.17 ? O3' 2GP 108 A 1 HETATM 11 C C2' 2GP . . . B 2 0.299 15.019 11.337 1 31.91 ? C2' 2GP 108 A 1 HETATM 12 O O2' 2GP . . . B 2 -0.897 14.466 10.872 1 31.42 ? O2' 2GP 108 A 1 HETATM 13 C C1' 2GP . . . B 2 0.962 14.173 12.407 1 32.16 ? C1' 2GP 108 A 1 HETATM 14 N N9 2GP . . . B 2 0.466 14.157 13.758 1 31.3 ? N9 2GP 108 A 1 HETATM 15 C C8 2GP . . . B 2 -0.014 13.133 14.485 1 31.93 ? C8 2GP 108 A 1 HETATM 16 N N7 2GP . . . B 2 -0.37 13.497 15.683 1 30.6 ? N7 2GP 108 A 1 HETATM 17 C C5 2GP . . . B 2 -0.087 14.858 15.767 1 31.27 ? C5 2GP 108 A 1 HETATM 18 C C6 2GP . . . B 2 -0.291 15.83 16.786 1 30.98 ? C6 2GP 108 A 1 HETATM 19 O O6 2GP . . . B 2 -0.75 15.685 17.943 1 30.99 ? O6 2GP 108 A 1 HETATM 20 N N1 2GP . . . B 2 0.054 17.099 16.393 1 30.31 ? N1 2GP 108 A 1 HETATM 21 C C2 2GP . . . B 2 0.57 17.41 15.151 1 30.37 ? C2 2GP 108 A 1 HETATM 22 N N2 2GP . . . B 2 0.898 18.701 14.957 1 29.81 ? N2 2GP 108 A 1 HETATM 23 N N3 2GP . . . B 2 0.796 16.524 14.201 1 30.58 ? N3 2GP 108 A 1 HETATM 24 C C4 2GP . . . B 2 0.42 15.271 14.572 1 30.87 ? C4 2GP 108 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #