data_1FX8 # _model_server_result.job_id GkSBovBQhtTc_TSPwF_3FA _model_server_result.datetime_utc '2024-11-17 06:31:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fx8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":474}' # _entry.id 1FX8 # _exptl.entry_id 1FX8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FX8 _cell.length_a 96.76 _cell.length_b 96.76 _cell.length_c 184.322 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FX8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 96.76 96.76 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 96.76 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 96.76 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1FX8 _atom_sites.fract_transf_matrix[1][1] 0.010335 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010335 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 473 473 BOG BOG . C 2 BOG A 1 474 474 BOG BOG . D 2 BOG A 1 475 475 BOG BOG . E 3 GOL A 1 662 662 GOL CRY . F 3 GOL A 1 661 661 GOL CRY . G 3 GOL A 1 663 663 GOL CRY . H 4 HOH A 1 300 300 HOH HOH . H 4 HOH A 2 301 301 HOH HOH . H 4 HOH A 3 302 302 HOH HOH . H 4 HOH A 4 303 303 HOH HOH . H 4 HOH A 5 304 304 HOH HOH . H 4 HOH A 6 305 305 HOH HOH . H 4 HOH A 7 308 308 HOH HOH . H 4 HOH A 8 309 309 HOH HOH . H 4 HOH A 9 310 310 HOH HOH . H 4 HOH A 10 311 311 HOH HOH . H 4 HOH A 11 312 312 HOH HOH . H 4 HOH A 12 313 313 HOH HOH . H 4 HOH A 13 314 314 HOH HOH . H 4 HOH A 14 315 315 HOH HOH . H 4 HOH A 15 316 316 HOH HOH . H 4 HOH A 16 317 317 HOH HOH . H 4 HOH A 17 318 318 HOH HOH . H 4 HOH A 18 319 319 HOH HOH . H 4 HOH A 19 320 320 HOH HOH . H 4 HOH A 20 321 321 HOH HOH . H 4 HOH A 21 322 322 HOH HOH . H 4 HOH A 22 323 323 HOH HOH . H 4 HOH A 23 324 324 HOH HOH . H 4 HOH A 24 325 325 HOH HOH . H 4 HOH A 25 326 326 HOH HOH . H 4 HOH A 26 327 327 HOH HOH . H 4 HOH A 27 328 328 HOH HOH . H 4 HOH A 28 329 329 HOH HOH . H 4 HOH A 29 330 330 HOH HOH . H 4 HOH A 30 331 331 HOH HOH . H 4 HOH A 31 332 332 HOH HOH . H 4 HOH A 32 333 333 HOH HOH . H 4 HOH A 33 334 334 HOH HOH . H 4 HOH A 34 335 335 HOH HOH . H 4 HOH A 35 336 336 HOH HOH . H 4 HOH A 36 337 337 HOH HOH . H 4 HOH A 37 339 339 HOH HOH . H 4 HOH A 38 340 340 HOH HOH . H 4 HOH A 39 341 341 HOH HOH . H 4 HOH A 40 342 342 HOH HOH . H 4 HOH A 41 343 343 HOH HOH . H 4 HOH A 42 344 344 HOH HOH . H 4 HOH A 43 345 345 HOH HOH . H 4 HOH A 44 346 346 HOH HOH . H 4 HOH A 45 347 347 HOH HOH . H 4 HOH A 46 348 348 HOH HOH . H 4 HOH A 47 349 349 HOH HOH . H 4 HOH A 48 350 350 HOH HOH . H 4 HOH A 49 351 351 HOH HOH . H 4 HOH A 50 352 352 HOH HOH . H 4 HOH A 51 353 353 HOH HOH . H 4 HOH A 52 354 354 HOH HOH . H 4 HOH A 53 355 355 HOH HOH . H 4 HOH A 54 356 356 HOH HOH . H 4 HOH A 55 357 357 HOH HOH . H 4 HOH A 56 358 358 HOH HOH . H 4 HOH A 57 359 359 HOH HOH . H 4 HOH A 58 360 360 HOH HOH . H 4 HOH A 59 361 361 HOH HOH . H 4 HOH A 60 362 362 HOH HOH . H 4 HOH A 61 363 363 HOH HOH . H 4 HOH A 62 364 364 HOH HOH . H 4 HOH A 63 365 365 HOH HOH . H 4 HOH A 64 366 366 HOH HOH . H 4 HOH A 65 367 367 HOH HOH . H 4 HOH A 66 368 368 HOH HOH . H 4 HOH A 67 369 369 HOH HOH . H 4 HOH A 68 370 370 HOH HOH . H 4 HOH A 69 371 371 HOH HOH . H 4 HOH A 70 372 372 HOH HOH . H 4 HOH A 71 373 373 HOH HOH . H 4 HOH A 72 374 374 HOH HOH . H 4 HOH A 73 375 375 HOH HOH . H 4 HOH A 74 376 376 HOH HOH . H 4 HOH A 75 377 377 HOH HOH . H 4 HOH A 76 378 378 HOH HOH . H 4 HOH A 77 379 379 HOH HOH . H 4 HOH A 78 380 380 HOH HOH . H 4 HOH A 79 381 381 HOH HOH . H 4 HOH A 80 382 382 HOH HOH . H 4 HOH A 81 383 383 HOH HOH . H 4 HOH A 82 384 384 HOH HOH . H 4 HOH A 83 385 385 HOH HOH . H 4 HOH A 84 386 386 HOH HOH . H 4 HOH A 85 387 387 HOH HOH . H 4 HOH A 86 388 388 HOH HOH . H 4 HOH A 87 389 389 HOH HOH . H 4 HOH A 88 390 390 HOH HOH . H 4 HOH A 89 391 391 HOH HOH . H 4 HOH A 90 392 392 HOH HOH . H 4 HOH A 91 393 393 HOH HOH . H 4 HOH A 92 394 394 HOH HOH . H 4 HOH A 93 395 395 HOH HOH . H 4 HOH A 94 396 396 HOH HOH . H 4 HOH A 95 397 397 HOH HOH . H 4 HOH A 96 398 398 HOH HOH . H 4 HOH A 97 399 399 HOH HOH . H 4 HOH A 98 400 400 HOH HOH . H 4 HOH A 99 401 401 HOH HOH . H 4 HOH A 100 402 402 HOH HOH . H 4 HOH A 101 403 403 HOH HOH . H 4 HOH A 102 404 404 HOH HOH . H 4 HOH A 103 405 405 HOH HOH . H 4 HOH A 104 406 406 HOH HOH . H 4 HOH A 105 407 407 HOH HOH . H 4 HOH A 106 408 408 HOH HOH . H 4 HOH A 107 409 409 HOH HOH . H 4 HOH A 108 410 410 HOH HOH . H 4 HOH A 109 411 411 HOH HOH . H 4 HOH A 110 412 412 HOH HOH . H 4 HOH A 111 436 436 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . C 2 16.277 69.982 149.37 1 65.62 ? C1 BOG 474 A 1 HETATM 2 O O1 BOG . . . C 2 16.872 69.757 150.657 1 67.96 ? O1 BOG 474 A 1 HETATM 3 C C2 BOG . . . C 2 16.968 71.152 148.619 1 64.56 ? C2 BOG 474 A 1 HETATM 4 O O2 BOG . . . C 2 17.039 72.351 149.393 1 64.75 ? O2 BOG 474 A 1 HETATM 5 C C3 BOG . . . C 2 16.193 71.408 147.328 1 63.77 ? C3 BOG 474 A 1 HETATM 6 O O3 BOG . . . C 2 16.762 72.486 146.584 1 61.11 ? O3 BOG 474 A 1 HETATM 7 C C4 BOG . . . C 2 16.136 70.136 146.471 1 63.98 ? C4 BOG 474 A 1 HETATM 8 O O4 BOG . . . C 2 15.252 70.333 145.375 1 65.48 ? O4 BOG 474 A 1 HETATM 9 C C5 BOG . . . C 2 15.781 68.834 147.253 1 64.04 ? C5 BOG 474 A 1 HETATM 10 O O5 BOG . . . C 2 16.358 68.788 148.578 1 64.37 ? O5 BOG 474 A 1 HETATM 11 C C6 BOG . . . C 2 16.281 67.563 146.495 1 63.88 ? C6 BOG 474 A 1 HETATM 12 O O6 BOG . . . C 2 15.859 67.475 145.131 1 62.14 ? O6 BOG 474 A 1 HETATM 13 C C1' BOG . . . C 2 16.16 68.783 151.42 1 68.44 ? C1' BOG 474 A 1 HETATM 14 C C2' BOG . . . C 2 16.593 68.841 152.894 1 70.29 ? C2' BOG 474 A 1 HETATM 15 C C3' BOG . . . C 2 15.748 67.88 153.757 1 71.56 ? C3' BOG 474 A 1 HETATM 16 C C4' BOG . . . C 2 16.149 67.952 155.244 1 71.66 ? C4' BOG 474 A 1 HETATM 17 C C5' BOG . . . C 2 17.531 67.335 155.493 1 72.56 ? C5' BOG 474 A 1 HETATM 18 C C6' BOG . . . C 2 17.955 67.467 156.966 1 72.87 ? C6' BOG 474 A 1 HETATM 19 C C7' BOG . . . C 2 19.328 66.81 157.185 1 73.08 ? C7' BOG 474 A 1 HETATM 20 C C8' BOG . . . C 2 19.858 67.078 158.596 1 73.32 ? C8' BOG 474 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #