data_1FXD # _model_server_result.job_id 9HKW21sbyc4eLGFUEgEvbA _model_server_result.datetime_utc '2024-11-09 02:23:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fxd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":59}' # _entry.id 1FXD # _exptl.entry_id 1FXD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 295.795 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE3-S4 CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.7 _cell.angle_gamma 90 _cell.entry_id 1FXD _cell.length_a 40.87 _cell.length_b 45.28 _cell.length_c 26.47 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FXD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 34.153027 0 25.603577 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 A CYS 18 1_555 A SG CYS 42 A CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? covale ? covale1 A C ALA 10 A ALA 10 1_555 A N SCH 11 A SCH 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? covale ? covale2 A C SCH 11 A SCH 11 1_555 A N GLU 12 A GLU 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? metalc ? metalc1 B FE3 F3S . A F3S 59 1_555 A SG CYS 14 A CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc2 B FE4 F3S . A F3S 59 1_555 A SG CYS 50 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc3 B FE1 F3S . A F3S 59 1_555 A SG CYS 8 A CYS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? # _chem_comp.formula 'Fe3 S4' _chem_comp.formula_weight 295.795 _chem_comp.id F3S _chem_comp.mon_nstd_flag . _chem_comp.name 'FE3-S4 CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1FXD _atom_sites.fract_transf_matrix[1][1] 0.024468 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006419 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.039057 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F3S A 1 59 59 F3S F3S . C 3 HOH A 1 67 67 HOH HOH . C 3 HOH A 2 68 68 HOH HOH . C 3 HOH A 3 69 69 HOH HOH . C 3 HOH A 4 70 70 HOH HOH . C 3 HOH A 5 71 71 HOH HOH . C 3 HOH A 6 72 72 HOH HOH . C 3 HOH A 7 73 73 HOH HOH . C 3 HOH A 8 74 74 HOH HOH . C 3 HOH A 9 75 75 HOH HOH . C 3 HOH A 10 76 76 HOH HOH . C 3 HOH A 11 77 77 HOH HOH . C 3 HOH A 12 79 79 HOH HOH . C 3 HOH A 13 81 81 HOH HOH . C 3 HOH A 14 82 82 HOH HOH . C 3 HOH A 15 84 84 HOH HOH . C 3 HOH A 16 85 85 HOH HOH . C 3 HOH A 17 87 87 HOH HOH . C 3 HOH A 18 88 88 HOH HOH . C 3 HOH A 19 90 90 HOH HOH . C 3 HOH A 20 91 91 HOH HOH . C 3 HOH A 21 92 92 HOH HOH . C 3 HOH A 22 93 93 HOH HOH . C 3 HOH A 23 94 94 HOH HOH . C 3 HOH A 24 95 95 HOH HOH . C 3 HOH A 25 96 96 HOH HOH . C 3 HOH A 26 97 97 HOH HOH . C 3 HOH A 27 99 99 HOH HOH . C 3 HOH A 28 100 100 HOH HOH . C 3 HOH A 29 102 102 HOH HOH . C 3 HOH A 30 107 107 HOH HOH . C 3 HOH A 31 109 109 HOH HOH . C 3 HOH A 32 110 110 HOH HOH . C 3 HOH A 33 112 112 HOH HOH . C 3 HOH A 34 113 113 HOH HOH . C 3 HOH A 35 114 114 HOH HOH . C 3 HOH A 36 115 115 HOH HOH . C 3 HOH A 37 116 116 HOH HOH . C 3 HOH A 38 117 117 HOH HOH . C 3 HOH A 39 118 118 HOH HOH . C 3 HOH A 40 119 119 HOH HOH . C 3 HOH A 41 120 120 HOH HOH . C 3 HOH A 42 121 121 HOH HOH . C 3 HOH A 43 122 122 HOH HOH . C 3 HOH A 44 123 123 HOH HOH . C 3 HOH A 45 124 124 HOH HOH . C 3 HOH A 46 125 125 HOH HOH . C 3 HOH A 47 126 126 HOH HOH . C 3 HOH A 48 127 127 HOH HOH . C 3 HOH A 49 128 128 HOH HOH . C 3 HOH A 50 129 129 HOH HOH . C 3 HOH A 51 130 130 HOH HOH . C 3 HOH A 52 131 131 HOH HOH . C 3 HOH A 53 133 133 HOH HOH . C 3 HOH A 54 134 134 HOH HOH . C 3 HOH A 55 135 135 HOH HOH . C 3 HOH A 56 136 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 F3S . . . B 2 9.97 0.183 2.543 1 12.19 ? FE1 F3S 59 A 1 HETATM 2 FE FE3 F3S . . . B 2 8.234 0.467 4.591 1 11.58 ? FE3 F3S 59 A 1 HETATM 3 FE FE4 F3S . . . B 2 7.501 -1.03 2.358 1 11.17 ? FE4 F3S 59 A 1 HETATM 4 S S1 F3S . . . B 2 9.574 2.048 3.697 1 11.54 ? S1 F3S 59 A 1 HETATM 5 S S2 F3S . . . B 2 8.567 0.118 0.689 1 12.36 ? S2 F3S 59 A 1 HETATM 6 S S3 F3S . . . B 2 9.167 -1.539 3.882 1 9.69 ? S3 F3S 59 A 1 HETATM 7 S S4 F3S . . . B 2 6.287 0.494 3.416 1 12.6 ? S4 F3S 59 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #