data_1FXS # _model_server_result.job_id FR_utGmFDtBhTjmZF2_wrQ _model_server_result.datetime_utc '2024-10-10 02:22:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fxs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":350}' # _entry.id 1FXS # _exptl.entry_id 1FXS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1FXS _cell.length_a 104.2 _cell.length_b 104.2 _cell.length_c 75.1 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1,2 A,B,C 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z+1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 52.1 90.239847 25.033333 3 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 1FXS _atom_sites.fract_transf_matrix[1][1] 0.009597 _atom_sites.fract_transf_matrix[1][2] 0.005541 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013316 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 350 350 NAP NAP . C 3 HOH A 1 351 3 HOH HOH . C 3 HOH A 2 352 4 HOH HOH . C 3 HOH A 3 353 5 HOH HOH . C 3 HOH A 4 354 6 HOH HOH . C 3 HOH A 5 355 7 HOH HOH . C 3 HOH A 6 356 8 HOH HOH . C 3 HOH A 7 357 9 HOH HOH . C 3 HOH A 8 358 10 HOH HOH . C 3 HOH A 9 359 11 HOH HOH . C 3 HOH A 10 360 12 HOH HOH . C 3 HOH A 11 361 13 HOH HOH . C 3 HOH A 12 362 14 HOH HOH . C 3 HOH A 13 363 15 HOH HOH . C 3 HOH A 14 364 16 HOH HOH . C 3 HOH A 15 365 17 HOH HOH . C 3 HOH A 16 366 18 HOH HOH . C 3 HOH A 17 367 19 HOH HOH . C 3 HOH A 18 368 20 HOH HOH . C 3 HOH A 19 369 21 HOH HOH . C 3 HOH A 20 370 22 HOH HOH . C 3 HOH A 21 371 23 HOH HOH . C 3 HOH A 22 372 24 HOH HOH . C 3 HOH A 23 373 25 HOH HOH . C 3 HOH A 24 374 26 HOH HOH . C 3 HOH A 25 375 27 HOH HOH . C 3 HOH A 26 376 28 HOH HOH . C 3 HOH A 27 377 29 HOH HOH . C 3 HOH A 28 378 30 HOH HOH . C 3 HOH A 29 379 31 HOH HOH . C 3 HOH A 30 380 32 HOH HOH . C 3 HOH A 31 381 33 HOH HOH . C 3 HOH A 32 382 34 HOH HOH . C 3 HOH A 33 383 35 HOH HOH . C 3 HOH A 34 384 36 HOH HOH . C 3 HOH A 35 385 37 HOH HOH . C 3 HOH A 36 386 38 HOH HOH . C 3 HOH A 37 387 39 HOH HOH . C 3 HOH A 38 388 40 HOH HOH . C 3 HOH A 39 389 41 HOH HOH . C 3 HOH A 40 390 42 HOH HOH . C 3 HOH A 41 391 43 HOH HOH . C 3 HOH A 42 392 44 HOH HOH . C 3 HOH A 43 393 46 HOH HOH . C 3 HOH A 44 394 47 HOH HOH . C 3 HOH A 45 395 48 HOH HOH . C 3 HOH A 46 396 49 HOH HOH . C 3 HOH A 47 397 50 HOH HOH . C 3 HOH A 48 398 51 HOH HOH . C 3 HOH A 49 399 52 HOH HOH . C 3 HOH A 50 400 53 HOH HOH . C 3 HOH A 51 401 54 HOH HOH . C 3 HOH A 52 402 55 HOH HOH . C 3 HOH A 53 403 56 HOH HOH . C 3 HOH A 54 404 57 HOH HOH . C 3 HOH A 55 405 58 HOH HOH . C 3 HOH A 56 406 59 HOH HOH . C 3 HOH A 57 407 60 HOH HOH . C 3 HOH A 58 408 61 HOH HOH . C 3 HOH A 59 409 62 HOH HOH . C 3 HOH A 60 410 64 HOH HOH . C 3 HOH A 61 411 66 HOH HOH . C 3 HOH A 62 412 67 HOH HOH . C 3 HOH A 63 413 68 HOH HOH . C 3 HOH A 64 414 69 HOH HOH . C 3 HOH A 65 415 70 HOH HOH . C 3 HOH A 66 416 71 HOH HOH . C 3 HOH A 67 417 72 HOH HOH . C 3 HOH A 68 418 73 HOH HOH . C 3 HOH A 69 419 74 HOH HOH . C 3 HOH A 70 420 75 HOH HOH . C 3 HOH A 71 421 76 HOH HOH . C 3 HOH A 72 422 77 HOH HOH . C 3 HOH A 73 423 78 HOH HOH . C 3 HOH A 74 424 79 HOH HOH . C 3 HOH A 75 425 80 HOH HOH . C 3 HOH A 76 426 81 HOH HOH . C 3 HOH A 77 427 82 HOH HOH . C 3 HOH A 78 428 83 HOH HOH . C 3 HOH A 79 429 84 HOH HOH . C 3 HOH A 80 430 85 HOH HOH . C 3 HOH A 81 431 86 HOH HOH . C 3 HOH A 82 432 87 HOH HOH . C 3 HOH A 83 433 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 31.315 25.65 13.389 1 34.76 ? PA NAP 350 A 1 HETATM 2 O O1A NAP . . . B 2 31.563 25.016 12.043 1 31.65 ? O1A NAP 350 A 1 HETATM 3 O O2A NAP . . . B 2 32.085 25.166 14.562 1 37.84 ? O2A NAP 350 A 1 HETATM 4 O O5B NAP . . . B 2 29.684 25.558 13.65 1 39.24 ? O5B NAP 350 A 1 HETATM 5 C C5B NAP . . . B 2 28.75 25.313 12.566 1 36.88 ? C5B NAP 350 A 1 HETATM 6 C C4B NAP . . . B 2 27.842 24.205 13.036 1 35.36 ? C4B NAP 350 A 1 HETATM 7 O O4B NAP . . . B 2 26.718 24.16 12.128 1 36.4 ? O4B NAP 350 A 1 HETATM 8 C C3B NAP . . . B 2 28.498 22.848 12.994 1 35.93 ? C3B NAP 350 A 1 HETATM 9 O O3B NAP . . . B 2 28.28 22.123 14.231 1 34.09 ? O3B NAP 350 A 1 HETATM 10 C C2B NAP . . . B 2 27.823 22.165 11.864 1 39.63 ? C2B NAP 350 A 1 HETATM 11 O O2B NAP . . . B 2 27.698 20.766 12.111 1 47.76 ? O2B NAP 350 A 1 HETATM 12 C C1B NAP . . . B 2 26.459 22.787 11.809 1 35.6 ? C1B NAP 350 A 1 HETATM 13 N N9A NAP . . . B 2 25.866 22.654 10.439 1 33.14 ? N9A NAP 350 A 1 HETATM 14 C C8A NAP . . . B 2 26.342 23.165 9.236 1 30.1 ? C8A NAP 350 A 1 HETATM 15 N N7A NAP . . . B 2 25.58 22.847 8.223 1 32.59 ? N7A NAP 350 A 1 HETATM 16 C C5A NAP . . . B 2 24.548 22.085 8.771 1 31.41 ? C5A NAP 350 A 1 HETATM 17 C C6A NAP . . . B 2 23.419 21.453 8.194 1 30.25 ? C6A NAP 350 A 1 HETATM 18 N N6A NAP . . . B 2 23.18 21.507 6.891 1 29.06 ? N6A NAP 350 A 1 HETATM 19 N N1A NAP . . . B 2 22.576 20.769 9.014 1 28.7 ? N1A NAP 350 A 1 HETATM 20 C C2A NAP . . . B 2 22.831 20.718 10.33 1 28.43 ? C2A NAP 350 A 1 HETATM 21 N N3A NAP . . . B 2 23.865 21.28 10.954 1 30.51 ? N3A NAP 350 A 1 HETATM 22 C C4A NAP . . . B 2 24.696 21.965 10.107 1 31.9 ? C4A NAP 350 A 1 HETATM 23 O O3 NAP . . . B 2 31.431 27.248 13.257 1 37.22 ? O3 NAP 350 A 1 HETATM 24 P PN NAP . . . B 2 31.468 28.504 14.272 1 35.69 ? PN NAP 350 A 1 HETATM 25 O O1N NAP . . . B 2 32.94 28.921 14.381 1 40.67 ? O1N NAP 350 A 1 HETATM 26 O O2N NAP . . . B 2 30.791 28.014 15.557 1 35.97 ? O2N NAP 350 A 1 HETATM 27 O O5D NAP . . . B 2 30.642 29.696 13.569 1 41.76 ? O5D NAP 350 A 1 HETATM 28 C C5D NAP . . . B 2 29.194 29.797 13.621 1 38.01 ? C5D NAP 350 A 1 HETATM 29 C C4D NAP . . . B 2 28.817 31.252 13.326 1 41.09 ? C4D NAP 350 A 1 HETATM 30 O O4D NAP . . . B 2 29.468 32.058 14.355 1 41.66 ? O4D NAP 350 A 1 HETATM 31 C C3D NAP . . . B 2 29.433 31.777 12.022 1 42.1 ? C3D NAP 350 A 1 HETATM 32 O O3D NAP . . . B 2 28.658 31.471 10.835 1 38.55 ? O3D NAP 350 A 1 HETATM 33 C C2D NAP . . . B 2 29.57 33.266 12.272 1 42.29 ? C2D NAP 350 A 1 HETATM 34 O O2D NAP . . . B 2 28.363 33.916 11.954 1 45.57 ? O2D NAP 350 A 1 HETATM 35 C C1D NAP . . . B 2 29.908 33.315 13.798 1 41.41 ? C1D NAP 350 A 1 HETATM 36 N N1N NAP . . . B 2 31.359 33.479 13.921 1 41.86 ? N1N NAP 350 A 1 HETATM 37 C C2N NAP . . . B 2 31.799 34.743 13.573 1 43.61 ? C2N NAP 350 A 1 HETATM 38 C C3N NAP . . . B 2 33.189 35.007 13.653 1 44.66 ? C3N NAP 350 A 1 HETATM 39 C C7N NAP . . . B 2 33.656 36.335 13.282 1 48.04 ? C7N NAP 350 A 1 HETATM 40 O O7N NAP . . . B 2 32.753 37.26 12.896 1 50.66 ? O7N NAP 350 A 1 HETATM 41 N N7N NAP . . . B 2 34.863 36.682 13.302 1 52.5 ? N7N NAP 350 A 1 HETATM 42 C C4N NAP . . . B 2 34.07 33.999 14.067 1 42.95 ? C4N NAP 350 A 1 HETATM 43 C C5N NAP . . . B 2 33.626 32.752 14.411 1 44.6 ? C5N NAP 350 A 1 HETATM 44 C C6N NAP . . . B 2 32.263 32.485 14.334 1 44.58 ? C6N NAP 350 A 1 HETATM 45 P P2B NAP . . . B 2 28.713 19.674 11.451 1 52.24 ? P2B NAP 350 A 1 HETATM 46 O O1X NAP . . . B 2 30.12 20.272 11.538 1 50.46 ? O1X NAP 350 A 1 HETATM 47 O O2X NAP . . . B 2 28.435 18.481 12.338 1 53.78 ? O2X NAP 350 A 1 HETATM 48 O O3X NAP . . . B 2 28.235 19.553 10.022 1 50.69 ? O3X NAP 350 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #