data_1FXY # _model_server_result.job_id sXZZFKFEm9EuCKJS4G4sEw _model_server_result.datetime_utc '2024-12-21 16:06:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fxy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 1FXY # _exptl.entry_id 1FXY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 453.986 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.46 _cell.angle_gamma 90 _cell.entry_id 1FXY _cell.length_a 65.51 _cell.length_b 48.92 _cell.length_c 75.54 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FXY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 37.873571 0 70.303054 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 141 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 120 A CYS 136 1_555 A SG CYS 187 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 152 A CYS 168 1_555 A SG CYS 166 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 177 A CYS 191 1_555 A SG CYS 201 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 B C3 0G6 . A 0G6 1 1_555 A NE2 HIS 42 A HIS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.5 ? covale ? covale2 B C2 0G6 . A 0G6 1 1_555 A OG SER 181 A SER 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? # _chem_comp.formula 'C21 H34 Cl N6 O3 1' _chem_comp.formula_weight 453.986 _chem_comp.id 0G6 _chem_comp.mon_nstd_flag . _chem_comp.name D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms PPACK # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA 0G6 sing 1 n n N H 0G6 sing 2 n n N H2 0G6 sing 3 n n CA C 0G6 sing 4 n n CA CB 0G6 sing 5 n n CA HA 0G6 sing 6 n n C O 0G6 doub 7 n n C N1 0G6 sing 8 n n CB CG 0G6 sing 9 n n CB HB2 0G6 sing 10 n n CB HB3 0G6 sing 11 n n CG CD1 0G6 doub 12 n y CG CD2 0G6 sing 13 n y CD1 CE1 0G6 sing 14 n y CD1 HD1 0G6 sing 15 n n CD2 CE2 0G6 doub 16 n y CD2 HD2 0G6 sing 17 n n CE1 CZ 0G6 doub 18 n y CE1 HE1 0G6 sing 19 n n CE2 CZ 0G6 sing 20 n y CE2 HE2 0G6 sing 21 n n CZ HZ 0G6 sing 22 n n N1 CA1 0G6 sing 23 n n N1 CD 0G6 sing 24 n n CA1 C1 0G6 sing 25 n n CA1 CB1 0G6 sing 26 n n CA1 HA1 0G6 sing 27 n n C1 O1 0G6 doub 28 n n C1 N2 0G6 sing 29 n n CB1 CG1 0G6 sing 30 n n CB1 HB21 0G6 sing 31 n n CB1 HB31 0G6 sing 32 n n CG1 CD 0G6 sing 33 n n CG1 HG2 0G6 sing 34 n n CG1 HG3 0G6 sing 35 n n CD HD21 0G6 sing 36 n n CD HD3 0G6 sing 37 n n N2 CA2 0G6 sing 38 n n N2 H1 0G6 sing 39 n n CA2 C2 0G6 sing 40 n n CA2 CB2 0G6 sing 41 n n CA2 HA2 0G6 sing 42 n n C2 O2 0G6 sing 43 n n C2 C3 0G6 sing 44 n n CB2 CG2 0G6 sing 45 n n CB2 HB22 0G6 sing 46 n n CB2 HB32 0G6 sing 47 n n CG2 CD3 0G6 sing 48 n n CG2 HG21 0G6 sing 49 n n CG2 HG31 0G6 sing 50 n n CD3 NE 0G6 sing 51 n n CD3 HD22 0G6 sing 52 n n CD3 HD31 0G6 sing 53 n n NE CZ1 0G6 sing 54 n n NE HE 0G6 sing 55 n n CZ1 NH1 0G6 sing 56 n n CZ1 NH2 0G6 doub 57 n n NH1 HH11 0G6 sing 58 n n NH1 HH12 0G6 sing 59 n n NH2 HH21 0G6 sing 60 n n NH2 HH22 0G6 sing 61 n n C3 H11 0G6 sing 62 n n C3 H21 0G6 sing 63 n n CL C3 0G6 sing 64 n n C2 H33 0G6 sing 65 n n O2 H34 0G6 sing 66 n n # _atom_sites.entry_id 1FXY _atom_sites.fract_transf_matrix[1][1] 0.015265 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006001 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014224 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0G6 A 1 1 1 0G6 DPN . C 3 HOH A 1 247 1 HOH HOH . C 3 HOH A 2 248 2 HOH HOH . C 3 HOH A 3 249 3 HOH HOH . C 3 HOH A 4 250 4 HOH HOH . C 3 HOH A 5 251 5 HOH HOH . C 3 HOH A 6 252 6 HOH HOH . C 3 HOH A 7 253 7 HOH HOH . C 3 HOH A 8 254 8 HOH HOH . C 3 HOH A 9 255 9 HOH HOH . C 3 HOH A 10 256 10 HOH HOH . C 3 HOH A 11 257 11 HOH HOH . C 3 HOH A 12 258 12 HOH HOH . C 3 HOH A 13 259 13 HOH HOH . C 3 HOH A 14 260 14 HOH HOH . C 3 HOH A 15 261 15 HOH HOH . C 3 HOH A 16 262 16 HOH HOH . C 3 HOH A 17 263 17 HOH HOH . C 3 HOH A 18 264 18 HOH HOH . C 3 HOH A 19 265 19 HOH HOH . C 3 HOH A 20 266 20 HOH HOH . C 3 HOH A 21 267 21 HOH HOH . C 3 HOH A 22 268 22 HOH HOH . C 3 HOH A 23 269 23 HOH HOH . C 3 HOH A 24 270 24 HOH HOH . C 3 HOH A 25 271 25 HOH HOH . C 3 HOH A 26 272 26 HOH HOH . C 3 HOH A 27 273 27 HOH HOH . C 3 HOH A 28 274 28 HOH HOH . C 3 HOH A 29 275 29 HOH HOH . C 3 HOH A 30 276 30 HOH HOH . C 3 HOH A 31 277 31 HOH HOH . C 3 HOH A 32 278 32 HOH HOH . C 3 HOH A 33 279 33 HOH HOH . C 3 HOH A 34 280 34 HOH HOH . C 3 HOH A 35 281 35 HOH HOH . C 3 HOH A 36 282 36 HOH HOH . C 3 HOH A 37 283 37 HOH HOH . C 3 HOH A 38 284 38 HOH HOH . C 3 HOH A 39 285 39 HOH HOH . C 3 HOH A 40 286 40 HOH HOH . C 3 HOH A 41 287 41 HOH HOH . C 3 HOH A 42 288 42 HOH HOH . C 3 HOH A 43 289 45 HOH HOH . C 3 HOH A 44 290 47 HOH HOH . C 3 HOH A 45 291 49 HOH HOH . C 3 HOH A 46 292 51 HOH HOH . C 3 HOH A 47 293 53 HOH HOH . C 3 HOH A 48 294 54 HOH HOH . C 3 HOH A 49 295 55 HOH HOH . C 3 HOH A 50 296 56 HOH HOH . C 3 HOH A 51 297 57 HOH HOH . C 3 HOH A 52 298 58 HOH HOH . C 3 HOH A 53 299 59 HOH HOH . C 3 HOH A 54 300 60 HOH HOH . C 3 HOH A 55 301 61 HOH HOH . C 3 HOH A 56 302 62 HOH HOH . C 3 HOH A 57 303 64 HOH HOH . C 3 HOH A 58 304 65 HOH HOH . C 3 HOH A 59 305 66 HOH HOH . C 3 HOH A 60 306 69 HOH HOH . C 3 HOH A 61 307 71 HOH HOH . C 3 HOH A 62 308 72 HOH HOH . C 3 HOH A 63 309 76 HOH HOH . C 3 HOH A 64 310 77 HOH HOH . C 3 HOH A 65 311 79 HOH HOH . C 3 HOH A 66 312 81 HOH HOH . C 3 HOH A 67 313 82 HOH HOH . C 3 HOH A 68 314 83 HOH HOH . C 3 HOH A 69 315 85 HOH HOH . C 3 HOH A 70 316 86 HOH HOH . C 3 HOH A 71 317 89 HOH HOH . C 3 HOH A 72 318 90 HOH HOH . C 3 HOH A 73 319 91 HOH HOH . C 3 HOH A 74 320 92 HOH HOH . C 3 HOH A 75 321 94 HOH HOH . C 3 HOH A 76 322 95 HOH HOH . C 3 HOH A 77 323 97 HOH HOH . C 3 HOH A 78 324 98 HOH HOH . C 3 HOH A 79 325 99 HOH HOH . C 3 HOH A 80 326 100 HOH HOH . C 3 HOH A 81 327 101 HOH HOH . C 3 HOH A 82 328 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 0G6 . . . B 2 20.518 11.878 12.614 1 23.14 ? N 0G6 1 A 1 HETATM 2 C CA 0G6 . . . B 2 21.054 11.229 13.842 1 15.84 ? CA 0G6 1 A 1 HETATM 3 C C 0G6 . . . B 2 20.069 10.21 14.39 1 16.2 ? C 0G6 1 A 1 HETATM 4 O O 0G6 . . . B 2 19.548 9.376 13.649 1 14.43 ? O 0G6 1 A 1 HETATM 5 C CB 0G6 . . . B 2 22.373 10.521 13.531 1 17.98 ? CB 0G6 1 A 1 HETATM 6 C CG 0G6 . . . B 2 23.535 11.449 13.361 1 19.94 ? CG 0G6 1 A 1 HETATM 7 C CD1 0G6 . . . B 2 23.903 12.316 14.382 1 21.58 ? CD1 0G6 1 A 1 HETATM 8 C CD2 0G6 . . . B 2 24.27 11.452 12.179 1 21.43 ? CD2 0G6 1 A 1 HETATM 9 C CE1 0G6 . . . B 2 24.987 13.172 14.229 1 19.07 ? CE1 0G6 1 A 1 HETATM 10 C CE2 0G6 . . . B 2 25.356 12.304 12.016 1 16.01 ? CE2 0G6 1 A 1 HETATM 11 C CZ 0G6 . . . B 2 25.714 13.165 13.043 1 17.64 ? CZ 0G6 1 A 1 HETATM 12 N N1 0G6 . . . B 2 19.778 10.281 15.696 1 14.3 ? N1 0G6 1 A 1 HETATM 13 C CA1 0G6 . . . B 2 18.847 9.328 16.304 1 15.1 ? CA1 0G6 1 A 1 HETATM 14 C C1 0G6 . . . B 2 17.414 9.453 15.787 1 16.17 ? C1 0G6 1 A 1 HETATM 15 O O1 0G6 . . . B 2 16.916 10.551 15.528 1 15.3 ? O1 0G6 1 A 1 HETATM 16 C CB1 0G6 . . . B 2 18.948 9.632 17.798 1 14 ? CB1 0G6 1 A 1 HETATM 17 C CG1 0G6 . . . B 2 19.328 11.074 17.849 1 11.98 ? CG1 0G6 1 A 1 HETATM 18 C CD 0G6 . . . B 2 20.254 11.279 16.671 1 13.38 ? CD 0G6 1 A 1 HETATM 19 N N2 0G6 . . . B 2 16.752 8.307 15.661 1 15.35 ? N2 0G6 1 A 1 HETATM 20 C CA2 0G6 . . . B 2 15.38 8.254 15.186 1 12.91 ? CA2 0G6 1 A 1 HETATM 21 C C2 0G6 . . . B 2 14.428 7.868 16.387 1 12.66 ? C2 0G6 1 A 1 HETATM 22 O O2 0G6 . . . B 2 13.1 8.197 15.985 1 14.51 ? O2 0G6 1 A 1 HETATM 23 C CB2 0G6 . . . B 2 15.288 7.248 14.038 1 9.11 ? CB2 0G6 1 A 1 HETATM 24 C CG2 0G6 . . . B 2 16.004 7.709 12.786 1 10.77 ? CG2 0G6 1 A 1 HETATM 25 C CD3 0G6 . . . B 2 16.131 6.6 11.759 1 17.43 ? CD3 0G6 1 A 1 HETATM 26 N NE 0G6 . . . B 2 16.808 7.063 10.547 1 14 ? NE 0G6 1 A 1 HETATM 27 C CZ1 0G6 . . . B 2 17.047 6.303 9.48 1 14.05 ? CZ1 0G6 1 A 1 HETATM 28 N NH1 0G6 . . . B 2 16.667 5.031 9.456 1 9.56 ? NH1 0G6 1 A 1 HETATM 29 N NH2 0G6 . . . B 2 17.675 6.818 8.433 1 11.64 ? NH2 0G6 1 A 1 HETATM 30 C C3 0G6 . . . B 2 14.725 8.566 17.783 1 10.06 ? C3 0G6 1 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #