data_1FY1 # _model_server_result.job_id z-DZp_4zoN3Mi08zwBSV6w _model_server_result.datetime_utc '2024-11-22 19:51:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fy1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 1FY1 # _exptl.entry_id 1FY1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FY1 _cell.length_a 38.72 _cell.length_b 66.56 _cell.length_c 102.99 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 1141 NAG 2 n B NAG 2 B 2 NAG ? 1142 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 42 A CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 A SG CYS 123 A CYS 123 1_555 A SG CYS 181 A CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 154 A CYS 154 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 171 A CYS 171 1_555 A SG CYS 196 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? covale ? covale1 A ND2 ASN 100 A ASN 100 1_555 C C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 A ND2 ASN 114 A ASN 114 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale3 A ND2 ASN 145 A ASN 145 1_555 D C1 NAG . A NAG 1451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 245 n n C1 O1 NAG sing 246 n n C1 O5 NAG sing 247 n n C1 H1 NAG sing 248 n n C2 C3 NAG sing 249 n n C2 N2 NAG sing 250 n n C2 H2 NAG sing 251 n n C3 C4 NAG sing 252 n n C3 O3 NAG sing 253 n n C3 H3 NAG sing 254 n n C4 C5 NAG sing 255 n n C4 O4 NAG sing 256 n n C4 H4 NAG sing 257 n n C5 C6 NAG sing 258 n n C5 O5 NAG sing 259 n n C5 H5 NAG sing 260 n n C6 O6 NAG sing 261 n n C6 H61 NAG sing 262 n n C6 H62 NAG sing 263 n n C7 C8 NAG sing 264 n n C7 N2 NAG sing 265 n n C7 O7 NAG doub 266 n n C8 H81 NAG sing 267 n n C8 H82 NAG sing 268 n n C8 H83 NAG sing 269 n n N2 HN2 NAG sing 270 n n O1 HO1 NAG sing 271 n n O3 HO3 NAG sing 272 n n O4 HO4 NAG sing 273 n n O6 HO6 NAG sing 274 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1FY1 _atom_sites.fract_transf_matrix[1][1] 0.025826 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015024 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 1001 1001 NAG NAG . D 3 NAG A 1 1451 1451 NAG NAG . E 4 EOH A 1 300 300 EOH ETH . F 5 HOH A 1 1501 1501 HOH HOH . F 5 HOH A 2 1502 1502 HOH HOH . F 5 HOH A 3 1503 1503 HOH HOH . F 5 HOH A 4 1504 1504 HOH HOH . F 5 HOH A 5 1505 1505 HOH HOH . F 5 HOH A 6 1506 1506 HOH HOH . F 5 HOH A 7 1507 1507 HOH HOH . F 5 HOH A 8 1508 1508 HOH HOH . F 5 HOH A 9 1509 1509 HOH HOH . F 5 HOH A 10 1510 1510 HOH HOH . F 5 HOH A 11 1511 1511 HOH HOH . F 5 HOH A 12 1512 1512 HOH HOH . F 5 HOH A 13 1513 1513 HOH HOH . F 5 HOH A 14 1514 1514 HOH HOH . F 5 HOH A 15 1515 1515 HOH HOH . F 5 HOH A 16 1516 1516 HOH HOH . F 5 HOH A 17 1517 1517 HOH HOH . F 5 HOH A 18 1518 1518 HOH HOH . F 5 HOH A 19 1519 1519 HOH HOH . F 5 HOH A 20 1520 1520 HOH HOH . F 5 HOH A 21 1521 1521 HOH HOH . F 5 HOH A 22 1522 1522 HOH HOH . F 5 HOH A 23 1523 1523 HOH HOH . F 5 HOH A 24 1524 1524 HOH HOH . F 5 HOH A 25 1525 1525 HOH HOH . F 5 HOH A 26 1526 1526 HOH HOH . F 5 HOH A 27 1527 1527 HOH HOH . F 5 HOH A 28 1528 1528 HOH HOH . F 5 HOH A 29 1529 1529 HOH HOH . F 5 HOH A 30 1530 1530 HOH HOH . F 5 HOH A 31 1531 1531 HOH HOH . F 5 HOH A 32 1532 1532 HOH HOH . F 5 HOH A 33 1533 1533 HOH HOH . F 5 HOH A 34 1534 1534 HOH HOH . F 5 HOH A 35 1535 1535 HOH HOH . F 5 HOH A 36 1536 1536 HOH HOH . F 5 HOH A 37 1537 1537 HOH HOH . F 5 HOH A 38 1538 1538 HOH HOH . F 5 HOH A 39 1539 1539 HOH HOH . F 5 HOH A 40 1540 1540 HOH HOH . F 5 HOH A 41 1541 1541 HOH HOH . F 5 HOH A 42 1542 1542 HOH HOH . F 5 HOH A 43 1543 1543 HOH HOH . F 5 HOH A 44 1544 1544 HOH HOH . F 5 HOH A 45 1545 1545 HOH HOH . F 5 HOH A 46 1546 1546 HOH HOH . F 5 HOH A 47 1547 1547 HOH HOH . F 5 HOH A 48 1548 1548 HOH HOH . F 5 HOH A 49 1549 1549 HOH HOH . F 5 HOH A 50 1550 1550 HOH HOH . F 5 HOH A 51 1551 1551 HOH HOH . F 5 HOH A 52 1552 1552 HOH HOH . F 5 HOH A 53 1553 1553 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 14.093 22.051 9.815 1 97 ? C1 NAG 1001 A 1 HETATM 2 C C2 NAG . . . C 3 13.846 22.25 8.303 1 54.58 ? C2 NAG 1001 A 1 HETATM 3 C C3 NAG . . . C 3 12.705 23.293 8.049 1 100 ? C3 NAG 1001 A 1 HETATM 4 C C4 NAG . . . C 3 11.485 23.307 9.015 1 100 ? C4 NAG 1001 A 1 HETATM 5 C C5 NAG . . . C 3 12.1 23.355 10.426 1 100 ? C5 NAG 1001 A 1 HETATM 6 C C6 NAG . . . C 3 11.109 23.536 11.592 1 100 ? C6 NAG 1001 A 1 HETATM 7 C C7 NAG . . . C 3 15.651 22.426 6.566 1 71.2 ? C7 NAG 1001 A 1 HETATM 8 C C8 NAG . . . C 3 16.706 23.453 6.081 1 89.68 ? C8 NAG 1001 A 1 HETATM 9 N N2 NAG . . . C 3 15.066 22.838 7.698 1 100 ? N2 NAG 1001 A 1 HETATM 10 O O3 NAG . . . C 3 12.264 23.13 6.722 1 100 ? O3 NAG 1001 A 1 HETATM 11 O O4 NAG . . . C 3 10.573 24.448 8.759 1 71.83 ? O4 NAG 1001 A 1 HETATM 12 O O5 NAG . . . C 3 12.863 22.133 10.516 1 100 ? O5 NAG 1001 A 1 HETATM 13 O O6 NAG . . . C 3 10.318 22.343 11.818 1 91.71 ? O6 NAG 1001 A 1 HETATM 14 O O7 NAG . . . C 3 14.98 21.748 5.784 1 100 ? O7 NAG 1001 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #