data_1FY1
#
_model_server_result.job_id            YW8ICAKs5S9MjQhEBUNUtw 
_model_server_result.datetime_utc      '2024-11-05 01:29:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1fy1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1451}' 
#
_entry.id    1FY1 
#
_exptl.entry_id    1FY1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1FY1 
_cell.length_a            38.72 
_cell.length_b            66.56 
_cell.length_c            102.99 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1FY1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG ? 1141 NAG 
2 n B NAG 2 B 2 NAG ? 1142 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 42 A CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf2 A SG CYS 123 A CYS 123 1_555 A SG CYS 181 A CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 A SG CYS 154 A CYS 154 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 A SG CYS 171 A CYS 171 1_555 A SG CYS 196 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
covale ? covale1 A ND2 ASN 100 A ASN 100 1_555 C C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale2 A ND2 ASN 114 A ASN 114 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? 
covale ? covale3 A ND2 ASN 145 A ASN 145 1_555 D C1 NAG . A NAG 1451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1FY1 
_atom_sites.fract_transf_matrix[1][1]    0.025826 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015024 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00971 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 1001 1001 NAG NAG . 
D 3 NAG A 1 1451 1451 NAG NAG . 
E 4 EOH A 1 300 300 EOH ETH . 
F 5 HOH A 1 1501 1501 HOH HOH . 
F 5 HOH A 2 1502 1502 HOH HOH . 
F 5 HOH A 3 1503 1503 HOH HOH . 
F 5 HOH A 4 1504 1504 HOH HOH . 
F 5 HOH A 5 1505 1505 HOH HOH . 
F 5 HOH A 6 1506 1506 HOH HOH . 
F 5 HOH A 7 1507 1507 HOH HOH . 
F 5 HOH A 8 1508 1508 HOH HOH . 
F 5 HOH A 9 1509 1509 HOH HOH . 
F 5 HOH A 10 1510 1510 HOH HOH . 
F 5 HOH A 11 1511 1511 HOH HOH . 
F 5 HOH A 12 1512 1512 HOH HOH . 
F 5 HOH A 13 1513 1513 HOH HOH . 
F 5 HOH A 14 1514 1514 HOH HOH . 
F 5 HOH A 15 1515 1515 HOH HOH . 
F 5 HOH A 16 1516 1516 HOH HOH . 
F 5 HOH A 17 1517 1517 HOH HOH . 
F 5 HOH A 18 1518 1518 HOH HOH . 
F 5 HOH A 19 1519 1519 HOH HOH . 
F 5 HOH A 20 1520 1520 HOH HOH . 
F 5 HOH A 21 1521 1521 HOH HOH . 
F 5 HOH A 22 1522 1522 HOH HOH . 
F 5 HOH A 23 1523 1523 HOH HOH . 
F 5 HOH A 24 1524 1524 HOH HOH . 
F 5 HOH A 25 1525 1525 HOH HOH . 
F 5 HOH A 26 1526 1526 HOH HOH . 
F 5 HOH A 27 1527 1527 HOH HOH . 
F 5 HOH A 28 1528 1528 HOH HOH . 
F 5 HOH A 29 1529 1529 HOH HOH . 
F 5 HOH A 30 1530 1530 HOH HOH . 
F 5 HOH A 31 1531 1531 HOH HOH . 
F 5 HOH A 32 1532 1532 HOH HOH . 
F 5 HOH A 33 1533 1533 HOH HOH . 
F 5 HOH A 34 1534 1534 HOH HOH . 
F 5 HOH A 35 1535 1535 HOH HOH . 
F 5 HOH A 36 1536 1536 HOH HOH . 
F 5 HOH A 37 1537 1537 HOH HOH . 
F 5 HOH A 38 1538 1538 HOH HOH . 
F 5 HOH A 39 1539 1539 HOH HOH . 
F 5 HOH A 40 1540 1540 HOH HOH . 
F 5 HOH A 41 1541 1541 HOH HOH . 
F 5 HOH A 42 1542 1542 HOH HOH . 
F 5 HOH A 43 1543 1543 HOH HOH . 
F 5 HOH A 44 1544 1544 HOH HOH . 
F 5 HOH A 45 1545 1545 HOH HOH . 
F 5 HOH A 46 1546 1546 HOH HOH . 
F 5 HOH A 47 1547 1547 HOH HOH . 
F 5 HOH A 48 1548 1548 HOH HOH . 
F 5 HOH A 49 1549 1549 HOH HOH . 
F 5 HOH A 50 1550 1550 HOH HOH . 
F 5 HOH A 51 1551 1551 HOH HOH . 
F 5 HOH A 52 1552 1552 HOH HOH . 
F 5 HOH A 53 1553 1553 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 3 26.279 23.98 40.983 1 63.53 ? C1 NAG 1451 A 1 
HETATM 2 C C2 NAG . . . D 3 26.265 25.393 41.544 1 32.62 ? C2 NAG 1451 A 1 
HETATM 3 C C3 NAG . . . D 3 27.678 25.975 41.259 1 53.95 ? C3 NAG 1451 A 1 
HETATM 4 C C4 NAG . . . D 3 28.819 25.038 41.776 1 60.39 ? C4 NAG 1451 A 1 
HETATM 5 C C5 NAG . . . D 3 28.652 23.577 41.342 1 84.4 ? C5 NAG 1451 A 1 
HETATM 6 C C6 NAG . . . D 3 29.567 22.593 42.1 1 80.09 ? C6 NAG 1451 A 1 
HETATM 7 C C7 NAG . . . D 3 24.034 26.446 41.277 1 100 ? C7 NAG 1451 A 1 
HETATM 8 C C8 NAG . . . D 3 23.453 27.292 40.123 1 32.84 ? C8 NAG 1451 A 1 
HETATM 9 N N2 NAG . . . D 3 25.251 26.156 40.815 1 22.33 ? N2 NAG 1451 A 1 
HETATM 10 O O3 NAG . . . D 3 27.671 27.192 41.963 1 91.72 ? O3 NAG 1451 A 1 
HETATM 11 O O4 NAG . . . D 3 30.221 25.401 41.482 1 65.33 ? O4 NAG 1451 A 1 
HETATM 12 O O5 NAG . . . D 3 27.295 23.263 41.642 1 61.47 ? O5 NAG 1451 A 1 
HETATM 13 O O6 NAG . . . D 3 29.202 22.484 43.508 1 85.67 ? O6 NAG 1451 A 1 
HETATM 14 O O7 NAG . . . D 3 23.596 26.146 42.418 1 46.18 ? O7 NAG 1451 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#