data_1FYD # _model_server_result.job_id 8kuRe2z5l3asoI7DvUE-xA _model_server_result.datetime_utc '2024-11-07 22:37:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fyd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2500}' # _entry.id 1FYD # _exptl.entry_id 1FYD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.15 _cell.angle_gamma 90 _cell.entry_id 1FYD _cell.length_a 53.45 _cell.length_b 87.2 _cell.length_c 61.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FYD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 208 A THR 208 1_555 C MG MG . A MG 2500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? metalc ? metalc2 F O HOH . A HOH 2186 1_555 C MG MG . A MG 2500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc3 F O HOH . A HOH 2187 1_555 C MG MG . A MG 2500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc4 C MG MG . A MG 2500 1_555 D O3P AMP . A AMP 4000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc5 C MG MG . A MG 2500 1_555 E O5 POP . A POP 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc6 C MG MG . A MG 2500 1_555 E O3 POP . A POP 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1FYD _atom_sites.fract_transf_matrix[1][1] 0.018709 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007238 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017526 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 2500 2500 MG MG . D 3 AMP A 1 4000 4000 AMP AMP . E 4 POP A 1 5000 5000 POP PP . F 5 HOH A 1 2001 2001 HOH HOH . F 5 HOH A 2 2002 2002 HOH HOH . F 5 HOH A 3 2003 2003 HOH HOH . F 5 HOH A 4 2005 2005 HOH HOH . F 5 HOH A 5 2006 2006 HOH HOH . F 5 HOH A 6 2008 2008 HOH HOH . F 5 HOH A 7 2009 2009 HOH HOH . F 5 HOH A 8 2012 2012 HOH HOH . F 5 HOH A 9 2013 2013 HOH HOH . F 5 HOH A 10 2027 2027 HOH HOH . F 5 HOH A 11 2028 2028 HOH HOH . F 5 HOH A 12 2030 2030 HOH HOH . F 5 HOH A 13 2031 2031 HOH HOH . F 5 HOH A 14 2034 2034 HOH HOH . F 5 HOH A 15 2037 2037 HOH HOH . F 5 HOH A 16 2038 2038 HOH HOH . F 5 HOH A 17 2040 2040 HOH HOH . F 5 HOH A 18 2046 2046 HOH HOH . F 5 HOH A 19 2047 2047 HOH HOH . F 5 HOH A 20 2050 2050 HOH HOH . F 5 HOH A 21 2051 2051 HOH HOH . F 5 HOH A 22 2052 2052 HOH HOH . F 5 HOH A 23 2053 2053 HOH HOH . F 5 HOH A 24 2055 2055 HOH HOH . F 5 HOH A 25 2056 2056 HOH HOH . F 5 HOH A 26 2057 2057 HOH HOH . F 5 HOH A 27 2058 2058 HOH HOH . F 5 HOH A 28 2060 2060 HOH HOH . F 5 HOH A 29 2061 2061 HOH HOH . F 5 HOH A 30 2062 2062 HOH HOH . F 5 HOH A 31 2065 2065 HOH HOH . F 5 HOH A 32 2066 2066 HOH HOH . F 5 HOH A 33 2067 2067 HOH HOH . F 5 HOH A 34 2068 2068 HOH HOH . F 5 HOH A 35 2070 2070 HOH HOH . F 5 HOH A 36 2072 2072 HOH HOH . F 5 HOH A 37 2073 2073 HOH HOH . F 5 HOH A 38 2076 2076 HOH HOH . F 5 HOH A 39 2078 2078 HOH HOH . F 5 HOH A 40 2080 2080 HOH HOH . F 5 HOH A 41 2082 2082 HOH HOH . F 5 HOH A 42 2084 2084 HOH HOH . F 5 HOH A 43 2085 2085 HOH HOH . F 5 HOH A 44 2087 2087 HOH HOH . F 5 HOH A 45 2088 2088 HOH HOH . F 5 HOH A 46 2090 2090 HOH HOH . F 5 HOH A 47 2095 2095 HOH HOH . F 5 HOH A 48 2097 2097 HOH HOH . F 5 HOH A 49 2100 2100 HOH HOH . F 5 HOH A 50 2101 2101 HOH HOH . F 5 HOH A 51 2102 2102 HOH HOH . F 5 HOH A 52 2105 2105 HOH HOH . F 5 HOH A 53 2106 2106 HOH HOH . F 5 HOH A 54 2107 2107 HOH HOH . F 5 HOH A 55 2111 2111 HOH HOH . F 5 HOH A 56 2112 2112 HOH HOH . F 5 HOH A 57 2114 2114 HOH HOH . F 5 HOH A 58 2115 2115 HOH HOH . F 5 HOH A 59 2116 2116 HOH HOH . F 5 HOH A 60 2117 2117 HOH HOH . F 5 HOH A 61 2118 2118 HOH HOH . F 5 HOH A 62 2119 2119 HOH HOH . F 5 HOH A 63 2120 2120 HOH HOH . F 5 HOH A 64 2121 2121 HOH HOH . F 5 HOH A 65 2122 2122 HOH HOH . F 5 HOH A 66 2125 2125 HOH HOH . F 5 HOH A 67 2126 2126 HOH HOH . F 5 HOH A 68 2128 2128 HOH HOH . F 5 HOH A 69 2132 2132 HOH HOH . F 5 HOH A 70 2133 2133 HOH HOH . F 5 HOH A 71 2135 2135 HOH HOH . F 5 HOH A 72 2137 2137 HOH HOH . F 5 HOH A 73 2138 2138 HOH HOH . F 5 HOH A 74 2139 2139 HOH HOH . F 5 HOH A 75 2141 2141 HOH HOH . F 5 HOH A 76 2142 2142 HOH HOH . F 5 HOH A 77 2143 2143 HOH HOH . F 5 HOH A 78 2144 2144 HOH HOH . F 5 HOH A 79 2145 2145 HOH HOH . F 5 HOH A 80 2146 2146 HOH HOH . F 5 HOH A 81 2147 2147 HOH HOH . F 5 HOH A 82 2148 2148 HOH HOH . F 5 HOH A 83 2149 2149 HOH HOH . F 5 HOH A 84 2151 2151 HOH HOH . F 5 HOH A 85 2152 2152 HOH HOH . F 5 HOH A 86 2154 2154 HOH HOH . F 5 HOH A 87 2155 2155 HOH HOH . F 5 HOH A 88 2161 2161 HOH HOH . F 5 HOH A 89 2162 2162 HOH HOH . F 5 HOH A 90 2163 2163 HOH HOH . F 5 HOH A 91 2164 2164 HOH HOH . F 5 HOH A 92 2165 2165 HOH HOH . F 5 HOH A 93 2167 2167 HOH HOH . F 5 HOH A 94 2168 2168 HOH HOH . F 5 HOH A 95 2169 2169 HOH HOH . F 5 HOH A 96 2172 2172 HOH HOH . F 5 HOH A 97 2175 2175 HOH HOH . F 5 HOH A 98 2176 2176 HOH HOH . F 5 HOH A 99 2179 2179 HOH HOH . F 5 HOH A 100 2180 2180 HOH HOH . F 5 HOH A 101 2181 2181 HOH HOH . F 5 HOH A 102 2182 2182 HOH HOH . F 5 HOH A 103 2183 2183 HOH HOH . F 5 HOH A 104 2185 2185 HOH HOH . F 5 HOH A 105 2186 2186 HOH HOH . F 5 HOH A 106 2187 2187 HOH HOH . G 5 HOH B 1 2004 2004 HOH HOH . G 5 HOH B 2 2007 2007 HOH HOH . G 5 HOH B 3 2010 2010 HOH HOH . G 5 HOH B 4 2011 2011 HOH HOH . G 5 HOH B 5 2014 2014 HOH HOH . G 5 HOH B 6 2015 2015 HOH HOH . G 5 HOH B 7 2016 2016 HOH HOH . G 5 HOH B 8 2017 2017 HOH HOH . G 5 HOH B 9 2018 2018 HOH HOH . G 5 HOH B 10 2019 2019 HOH HOH . G 5 HOH B 11 2020 2020 HOH HOH . G 5 HOH B 12 2021 2021 HOH HOH . G 5 HOH B 13 2022 2022 HOH HOH . G 5 HOH B 14 2023 2023 HOH HOH . G 5 HOH B 15 2024 2024 HOH HOH . G 5 HOH B 16 2025 2025 HOH HOH . G 5 HOH B 17 2026 2026 HOH HOH . G 5 HOH B 18 2029 2029 HOH HOH . G 5 HOH B 19 2032 2032 HOH HOH . G 5 HOH B 20 2033 2033 HOH HOH . G 5 HOH B 21 2035 2035 HOH HOH . G 5 HOH B 22 2036 2036 HOH HOH . G 5 HOH B 23 2039 2039 HOH HOH . G 5 HOH B 24 2041 2041 HOH HOH . G 5 HOH B 25 2042 2042 HOH HOH . G 5 HOH B 26 2043 2043 HOH HOH . G 5 HOH B 27 2044 2044 HOH HOH . G 5 HOH B 28 2045 2045 HOH HOH . G 5 HOH B 29 2048 2048 HOH HOH . G 5 HOH B 30 2049 2049 HOH HOH . G 5 HOH B 31 2054 2054 HOH HOH . G 5 HOH B 32 2059 2059 HOH HOH . G 5 HOH B 33 2063 2063 HOH HOH . G 5 HOH B 34 2064 2064 HOH HOH . G 5 HOH B 35 2069 2069 HOH HOH . G 5 HOH B 36 2071 2071 HOH HOH . G 5 HOH B 37 2074 2074 HOH HOH . G 5 HOH B 38 2075 2075 HOH HOH . G 5 HOH B 39 2077 2077 HOH HOH . G 5 HOH B 40 2079 2079 HOH HOH . G 5 HOH B 41 2081 2081 HOH HOH . G 5 HOH B 42 2083 2083 HOH HOH . G 5 HOH B 43 2086 2086 HOH HOH . G 5 HOH B 44 2089 2089 HOH HOH . G 5 HOH B 45 2091 2091 HOH HOH . G 5 HOH B 46 2092 2092 HOH HOH . G 5 HOH B 47 2093 2093 HOH HOH . G 5 HOH B 48 2094 2094 HOH HOH . G 5 HOH B 49 2096 2096 HOH HOH . G 5 HOH B 50 2098 2098 HOH HOH . G 5 HOH B 51 2099 2099 HOH HOH . G 5 HOH B 52 2103 2103 HOH HOH . G 5 HOH B 53 2104 2104 HOH HOH . G 5 HOH B 54 2108 2108 HOH HOH . G 5 HOH B 55 2109 2109 HOH HOH . G 5 HOH B 56 2110 2110 HOH HOH . G 5 HOH B 57 2113 2113 HOH HOH . G 5 HOH B 58 2123 2123 HOH HOH . G 5 HOH B 59 2124 2124 HOH HOH . G 5 HOH B 60 2127 2127 HOH HOH . G 5 HOH B 61 2129 2129 HOH HOH . G 5 HOH B 62 2130 2130 HOH HOH . G 5 HOH B 63 2131 2131 HOH HOH . G 5 HOH B 64 2134 2134 HOH HOH . G 5 HOH B 65 2136 2136 HOH HOH . G 5 HOH B 66 2140 2140 HOH HOH . G 5 HOH B 67 2150 2150 HOH HOH . G 5 HOH B 68 2153 2153 HOH HOH . G 5 HOH B 69 2156 2156 HOH HOH . G 5 HOH B 70 2157 2157 HOH HOH . G 5 HOH B 71 2158 2158 HOH HOH . G 5 HOH B 72 2159 2159 HOH HOH . G 5 HOH B 73 2160 2160 HOH HOH . G 5 HOH B 74 2166 2166 HOH HOH . G 5 HOH B 75 2170 2170 HOH HOH . G 5 HOH B 76 2171 2171 HOH HOH . G 5 HOH B 77 2173 2173 HOH HOH . G 5 HOH B 78 2174 2174 HOH HOH . G 5 HOH B 79 2177 2177 HOH HOH . G 5 HOH B 80 2178 2178 HOH HOH . G 5 HOH B 81 2184 2184 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 15.791 _atom_site.Cartn_y 59.175 _atom_site.Cartn_z 50.792 _atom_site.occupancy 0.35 _atom_site.B_iso_or_equiv 23.8 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 2500 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #