data_1FYT
#
_model_server_result.job_id            FNFF2HD0-8hj3Zv3nU2gsA 
_model_server_result.datetime_utc      '2024-11-25 23:15:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1fyt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    1FYT 
#
_exptl.entry_id    1FYT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          6 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.23 
_cell.angle_gamma         90 
_cell.entry_id            1FYT 
_cell.length_a            142.902 
_cell.length_b            73.439 
_cell.length_c            122.428 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1FYT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 107 A CYS 107 1_555 A SG CYS 163 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf2 B SG CYS 15 B CYS 15 1_555 B SG CYS 79 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf3 B SG CYS 117 B CYS 117 1_555 B SG CYS 173 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 D SG CYS 22 D CYS 22 1_555 D SG CYS 90 D CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 D SG CYS 137 D CYS 139 1_555 D SG CYS 187 D CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf6 E SG CYS 21 E CYS 23 1_555 E SG CYS 89 E CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf7 E SG CYS 142 E CYS 148 1_555 E SG CYS 207 E CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
covale ? covale1 A ND2 ASN 78 A ASN 78 1_555 F C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale2 A ND2 ASN 118 A ASN 118 1_555 G C1 NAG . A NAG 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1FYT 
_atom_sites.fract_transf_matrix[1][1]    0.006998 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002304 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013617 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008599 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 NAG A 1 501 501 NAG NAG . 
G 6 NAG A 1 511 511 NAG NAG . 
H 7 HOH A 1 512 6 HOH WAT . 
H 7 HOH A 2 513 8 HOH WAT . 
H 7 HOH A 3 514 9 HOH WAT . 
H 7 HOH A 4 515 12 HOH WAT . 
H 7 HOH A 5 516 20 HOH WAT . 
H 7 HOH A 6 517 23 HOH WAT . 
H 7 HOH A 7 518 45 HOH WAT . 
H 7 HOH A 8 519 46 HOH WAT . 
H 7 HOH A 9 520 55 HOH WAT . 
H 7 HOH A 10 521 56 HOH WAT . 
H 7 HOH A 11 522 62 HOH WAT . 
H 7 HOH A 12 523 71 HOH WAT . 
H 7 HOH A 13 524 72 HOH WAT . 
H 7 HOH A 14 525 85 HOH WAT . 
H 7 HOH A 15 526 92 HOH WAT . 
H 7 HOH A 16 527 97 HOH WAT . 
I 7 HOH B 1 193 1 HOH WAT . 
I 7 HOH B 2 194 5 HOH WAT . 
I 7 HOH B 3 195 10 HOH WAT . 
I 7 HOH B 4 196 11 HOH WAT . 
I 7 HOH B 5 197 17 HOH WAT . 
I 7 HOH B 6 198 19 HOH WAT . 
I 7 HOH B 7 199 25 HOH WAT . 
I 7 HOH B 8 200 41 HOH WAT . 
I 7 HOH B 9 201 44 HOH WAT . 
I 7 HOH B 10 202 47 HOH WAT . 
I 7 HOH B 11 203 48 HOH WAT . 
I 7 HOH B 12 204 69 HOH WAT . 
I 7 HOH B 13 205 70 HOH WAT . 
I 7 HOH B 14 206 79 HOH WAT . 
I 7 HOH B 15 207 90 HOH WAT . 
I 7 HOH B 16 208 93 HOH WAT . 
I 7 HOH B 17 209 94 HOH WAT . 
J 7 HOH C 1 50 50 HOH WAT . 
K 7 HOH D 1 215 4 HOH WAT . 
K 7 HOH D 2 216 16 HOH WAT . 
K 7 HOH D 3 217 18 HOH WAT . 
K 7 HOH D 4 218 21 HOH WAT . 
K 7 HOH D 5 219 22 HOH WAT . 
K 7 HOH D 6 220 24 HOH WAT . 
K 7 HOH D 7 221 32 HOH WAT . 
K 7 HOH D 8 222 35 HOH WAT . 
K 7 HOH D 9 223 36 HOH WAT . 
K 7 HOH D 10 224 38 HOH WAT . 
K 7 HOH D 11 225 39 HOH WAT . 
K 7 HOH D 12 226 40 HOH WAT . 
K 7 HOH D 13 227 42 HOH WAT . 
K 7 HOH D 14 228 43 HOH WAT . 
K 7 HOH D 15 229 53 HOH WAT . 
K 7 HOH D 16 230 57 HOH WAT . 
K 7 HOH D 17 231 58 HOH WAT . 
K 7 HOH D 18 232 59 HOH WAT . 
K 7 HOH D 19 233 63 HOH WAT . 
K 7 HOH D 20 234 65 HOH WAT . 
K 7 HOH D 21 235 66 HOH WAT . 
K 7 HOH D 22 236 67 HOH WAT . 
K 7 HOH D 23 237 68 HOH WAT . 
K 7 HOH D 24 238 73 HOH WAT . 
K 7 HOH D 25 239 76 HOH WAT . 
K 7 HOH D 26 240 80 HOH WAT . 
K 7 HOH D 27 241 81 HOH WAT . 
K 7 HOH D 28 242 87 HOH WAT . 
K 7 HOH D 29 243 95 HOH WAT . 
L 7 HOH E 1 252 2 HOH WAT . 
L 7 HOH E 2 253 3 HOH WAT . 
L 7 HOH E 3 254 7 HOH WAT . 
L 7 HOH E 4 255 13 HOH WAT . 
L 7 HOH E 5 256 14 HOH WAT . 
L 7 HOH E 6 257 15 HOH WAT . 
L 7 HOH E 7 258 26 HOH WAT . 
L 7 HOH E 8 259 27 HOH WAT . 
L 7 HOH E 9 260 28 HOH WAT . 
L 7 HOH E 10 261 29 HOH WAT . 
L 7 HOH E 11 262 30 HOH WAT . 
L 7 HOH E 12 263 31 HOH WAT . 
L 7 HOH E 13 264 33 HOH WAT . 
L 7 HOH E 14 265 34 HOH WAT . 
L 7 HOH E 15 266 37 HOH WAT . 
L 7 HOH E 16 267 49 HOH WAT . 
L 7 HOH E 17 268 51 HOH WAT . 
L 7 HOH E 18 269 52 HOH WAT . 
L 7 HOH E 19 270 54 HOH WAT . 
L 7 HOH E 20 271 60 HOH WAT . 
L 7 HOH E 21 272 61 HOH WAT . 
L 7 HOH E 22 273 64 HOH WAT . 
L 7 HOH E 23 274 74 HOH WAT . 
L 7 HOH E 24 275 75 HOH WAT . 
L 7 HOH E 25 276 77 HOH WAT . 
L 7 HOH E 26 277 78 HOH WAT . 
L 7 HOH E 27 278 82 HOH WAT . 
L 7 HOH E 28 279 83 HOH WAT . 
L 7 HOH E 29 280 84 HOH WAT . 
L 7 HOH E 30 281 86 HOH WAT . 
L 7 HOH E 31 282 88 HOH WAT . 
L 7 HOH E 32 283 89 HOH WAT . 
L 7 HOH E 33 284 91 HOH WAT . 
L 7 HOH E 34 285 96 HOH WAT . 
L 7 HOH E 35 286 98 HOH WAT . 
L 7 HOH E 36 287 99 HOH WAT . 
L 7 HOH E 37 288 100 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . F 6 33.998 21.461 26.422 1 83.55 ? C1 NAG 501 A 1 
HETATM 2 C C2 NAG . . . F 6 33.441 20.15 26.961 1 87.28 ? C2 NAG 501 A 1 
HETATM 3 C C3 NAG . . . F 6 31.947 19.984 26.595 1 87.38 ? C3 NAG 501 A 1 
HETATM 4 C C4 NAG . . . F 6 31.154 21.212 26.991 1 88.36 ? C4 NAG 501 A 1 
HETATM 5 C C5 NAG . . . F 6 31.828 22.428 26.388 1 87.13 ? C5 NAG 501 A 1 
HETATM 6 C C6 NAG . . . F 6 31.099 23.731 26.765 1 90.35 ? C6 NAG 501 A 1 
HETATM 7 C C7 NAG . . . F 6 35.041 18.383 27.245 1 91.92 ? C7 NAG 501 A 1 
HETATM 8 C C8 NAG . . . F 6 36.2 17.691 26.556 1 91.28 ? C8 NAG 501 A 1 
HETATM 9 N N2 NAG . . . F 6 34.202 19.031 26.449 1 89.31 ? N2 NAG 501 A 1 
HETATM 10 O O3 NAG . . . F 6 31.385 18.863 27.253 1 89.33 ? O3 NAG 501 A 1 
HETATM 11 O O4 NAG . . . F 6 29.826 21.122 26.489 1 85.15 ? O4 NAG 501 A 1 
HETATM 12 O O5 NAG . . . F 6 33.179 22.531 26.852 1 85.32 ? O5 NAG 501 A 1 
HETATM 13 O O6 NAG . . . F 6 31.753 24.476 27.8 1 91.31 ? O6 NAG 501 A 1 
HETATM 14 O O7 NAG . . . F 6 34.91 18.324 28.47 1 92.74 ? O7 NAG 501 A 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           14 
#