data_1FZA # _model_server_result.job_id COodY8JMD80poEkUMaC_pg _model_server_result.datetime_utc '2024-11-22 01:42:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fza # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1}' # _entry.id 1FZA # _exptl.entry_id 1FZA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.7 _cell.angle_gamma 90 _cell.entry_id 1FZA _cell.length_a 107.72 _cell.length_b 48.08 _cell.length_c 167.56 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FZA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 161 1_555 A SG CYS 55 A CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? disulf ? disulf2 A SG CYS 51 A CYS 161 1_555 C SG CYS 48 C CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 55 A CYS 165 1_555 B SG CYS 60 B CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf4 B SG CYS 64 B CYS 197 1_555 C SG CYS 52 C CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 B SG CYS 68 B CYS 201 1_555 B SG CYS 153 B CYS 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 B SG CYS 78 B CYS 211 1_555 B SG CYS 107 B CYS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf7 B SG CYS 261 B CYS 394 1_555 B SG CYS 274 B CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 C SG CYS 66 C CYS 153 1_555 C SG CYS 95 C CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf9 C SG CYS 239 C CYS 326 1_555 C SG CYS 252 C CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf10 D SG CYS 51 D CYS 161 1_555 D SG CYS 55 D CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? disulf ? disulf11 D SG CYS 51 D CYS 161 1_555 F SG CYS 48 F CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf12 D SG CYS 55 D CYS 165 1_555 E SG CYS 60 E CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf13 E SG CYS 64 E CYS 197 1_555 F SG CYS 52 F CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf14 E SG CYS 68 E CYS 201 1_555 E SG CYS 153 E CYS 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf15 E SG CYS 78 E CYS 211 1_555 E SG CYS 107 E CYS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf16 E SG CYS 261 E CYS 394 1_555 E SG CYS 274 E CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf17 F SG CYS 66 F CYS 153 1_555 F SG CYS 95 F CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf18 F SG CYS 239 F CYS 326 1_555 F SG CYS 252 F CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 H CA CA . C CA 1 1_555 C OD2 ASP 231 C ASP 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc2 H CA CA . C CA 1 1_555 C OD1 ASP 233 C ASP 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc3 H CA CA . C CA 1 1_555 C O PHE 235 C PHE 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc4 H CA CA . C CA 1 1_555 C N GLY 237 C GLY 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.249 ? metalc ? metalc5 H CA CA . C CA 1 1_555 C O GLY 237 C GLY 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc6 J CA CA . F CA 1 1_555 F OD2 ASP 231 F ASP 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc7 J CA CA . F CA 1 1_555 F OD1 ASP 233 F ASP 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc8 J CA CA . F CA 1 1_555 F O PHE 235 F PHE 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc9 J CA CA . F CA 1 1_555 F N GLY 237 F GLY 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.249 ? metalc ? metalc10 J CA CA . F CA 1 1_555 F O GLY 237 F GLY 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1FZA _atom_sites.fract_transf_matrix[1][1] 0.009283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002609 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020799 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006199 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG B 1 1 1 NAG NAG . H 5 CA C 1 1 1 CA CA . I 4 NAG E 1 1 1 NAG NAG . J 5 CA F 1 1 1 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 4 53.459 75.283 10.333 1 96.48 ? C1 NAG 1 E 1 HETATM 2 C C2 NAG . . . I 4 53.353 73.868 9.765 1 96.12 ? C2 NAG 1 E 1 HETATM 3 C C3 NAG . . . I 4 53.097 73.933 8.262 1 96.47 ? C3 NAG 1 E 1 HETATM 4 C C4 NAG . . . I 4 53.962 75.042 7.64 1 97.7 ? C4 NAG 1 E 1 HETATM 5 C C5 NAG . . . I 4 55.121 75.422 8.581 1 96.23 ? C5 NAG 1 E 1 HETATM 6 C C6 NAG . . . I 4 56.064 76.464 7.976 1 94.24 ? C6 NAG 1 E 1 HETATM 7 C C7 NAG . . . I 4 54.524 71.804 10.202 1 98.36 ? C7 NAG 1 E 1 HETATM 8 C C8 NAG . . . I 4 55.839 71.093 10.489 1 97.79 ? C8 NAG 1 E 1 HETATM 9 N N2 NAG . . . I 4 54.571 73.124 10.037 1 96.75 ? N2 NAG 1 E 1 HETATM 10 O O3 NAG . . . I 4 51.712 74.185 8.022 1 95.01 ? O3 NAG 1 E 1 HETATM 11 O O4 NAG . . . I 4 54.493 74.596 6.393 1 98.55 ? O4 NAG 1 E 1 HETATM 12 O O5 NAG . . . I 4 54.621 75.965 9.83 1 97.16 ? O5 NAG 1 E 1 HETATM 13 O O6 NAG . . . I 4 56.034 77.696 8.693 1 90.71 ? O6 NAG 1 E 1 HETATM 14 O O7 NAG . . . I 4 53.475 71.153 10.12 1 99.3 ? O7 NAG 1 E 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #