data_1FZQ # _model_server_result.job_id 0bTIpBrkrURMB8t-MZDblQ _model_server_result.datetime_utc '2024-11-05 16:25:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fzq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 1FZQ # _exptl.entry_id 1FZQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FZQ _cell.length_a 74.421 _cell.length_b 64.583 _cell.length_c 40.386 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FZQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 83 n n PB O2B GDP sing 84 n n PB O3B GDP sing 85 n n PB O3A GDP sing 86 n n O2B HOB2 GDP sing 87 n n O3B HOB3 GDP sing 88 n n O3A PA GDP sing 89 n n PA O1A GDP doub 90 n n PA O2A GDP sing 91 n n PA O5' GDP sing 92 n n O2A HOA2 GDP sing 93 n n O5' C5' GDP sing 94 n n C5' C4' GDP sing 95 n n C5' H5' GDP sing 96 n n C5' "H5''" GDP sing 97 n n C4' O4' GDP sing 98 n n C4' C3' GDP sing 99 n n C4' H4' GDP sing 100 n n O4' C1' GDP sing 101 n n C3' O3' GDP sing 102 n n C3' C2' GDP sing 103 n n C3' H3' GDP sing 104 n n O3' HO3' GDP sing 105 n n C2' O2' GDP sing 106 n n C2' C1' GDP sing 107 n n C2' H2' GDP sing 108 n n O2' HO2' GDP sing 109 n n C1' N9 GDP sing 110 n n C1' H1' GDP sing 111 n n N9 C8 GDP sing 112 n y N9 C4 GDP sing 113 n y C8 N7 GDP doub 114 n y C8 H8 GDP sing 115 n n N7 C5 GDP sing 116 n y C5 C6 GDP sing 117 n n C5 C4 GDP doub 118 n y C6 O6 GDP doub 119 n n C6 N1 GDP sing 120 n n N1 C2 GDP sing 121 n n N1 HN1 GDP sing 122 n n C2 N2 GDP sing 123 n n C2 N3 GDP doub 124 n n N2 HN21 GDP sing 125 n n N2 HN22 GDP sing 126 n n N3 C4 GDP sing 127 n n # _atom_sites.entry_id 1FZQ _atom_sites.fract_transf_matrix[1][1] 0.013437 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 2 SO4 A 1 402 2 SO4 SO4 . D 3 NH4 A 1 501 1 NH4 NH4 . E 4 MES A 1 201 1 MES MES . F 5 GDP A 1 301 1 GDP GDP . G 6 HOH A 1 502 1 HOH WAT . G 6 HOH A 2 503 2 HOH WAT . G 6 HOH A 3 504 3 HOH WAT . G 6 HOH A 4 505 4 HOH WAT . G 6 HOH A 5 506 5 HOH WAT . G 6 HOH A 6 507 6 HOH WAT . G 6 HOH A 7 508 7 HOH WAT . G 6 HOH A 8 509 8 HOH WAT . G 6 HOH A 9 510 9 HOH WAT . G 6 HOH A 10 511 10 HOH WAT . G 6 HOH A 11 512 11 HOH WAT . G 6 HOH A 12 513 12 HOH WAT . G 6 HOH A 13 514 13 HOH WAT . G 6 HOH A 14 515 14 HOH WAT . G 6 HOH A 15 516 15 HOH WAT . G 6 HOH A 16 517 16 HOH WAT . G 6 HOH A 17 518 17 HOH WAT . G 6 HOH A 18 519 18 HOH WAT . G 6 HOH A 19 520 19 HOH WAT . G 6 HOH A 20 521 20 HOH WAT . G 6 HOH A 21 522 21 HOH WAT . G 6 HOH A 22 523 22 HOH WAT . G 6 HOH A 23 524 23 HOH WAT . G 6 HOH A 24 525 24 HOH WAT . G 6 HOH A 25 526 25 HOH WAT . G 6 HOH A 26 527 26 HOH WAT . G 6 HOH A 27 528 27 HOH WAT . G 6 HOH A 28 529 28 HOH WAT . G 6 HOH A 29 530 29 HOH WAT . G 6 HOH A 30 531 30 HOH WAT . G 6 HOH A 31 532 31 HOH WAT . G 6 HOH A 32 533 32 HOH WAT . G 6 HOH A 33 534 33 HOH WAT . G 6 HOH A 34 535 34 HOH WAT . G 6 HOH A 35 536 35 HOH WAT . G 6 HOH A 36 537 36 HOH WAT . G 6 HOH A 37 538 37 HOH WAT . G 6 HOH A 38 539 38 HOH WAT . G 6 HOH A 39 540 39 HOH WAT . G 6 HOH A 40 541 40 HOH WAT . G 6 HOH A 41 542 41 HOH WAT . G 6 HOH A 42 543 42 HOH WAT . G 6 HOH A 43 544 43 HOH WAT . G 6 HOH A 44 545 44 HOH WAT . G 6 HOH A 45 546 45 HOH WAT . G 6 HOH A 46 547 46 HOH WAT . G 6 HOH A 47 548 47 HOH WAT . G 6 HOH A 48 549 48 HOH WAT . G 6 HOH A 49 550 49 HOH WAT . G 6 HOH A 50 551 50 HOH WAT . G 6 HOH A 51 552 51 HOH WAT . G 6 HOH A 52 553 52 HOH WAT . G 6 HOH A 53 554 53 HOH WAT . G 6 HOH A 54 555 54 HOH WAT . G 6 HOH A 55 556 55 HOH WAT . G 6 HOH A 56 557 56 HOH WAT . G 6 HOH A 57 558 57 HOH WAT . G 6 HOH A 58 559 58 HOH WAT . G 6 HOH A 59 560 59 HOH WAT . G 6 HOH A 60 561 60 HOH WAT . G 6 HOH A 61 562 61 HOH WAT . G 6 HOH A 62 563 62 HOH WAT . G 6 HOH A 63 564 63 HOH WAT . G 6 HOH A 64 565 64 HOH WAT . G 6 HOH A 65 566 65 HOH WAT . G 6 HOH A 66 567 66 HOH WAT . G 6 HOH A 67 568 67 HOH WAT . G 6 HOH A 68 569 68 HOH WAT . G 6 HOH A 69 570 69 HOH WAT . G 6 HOH A 70 571 70 HOH WAT . G 6 HOH A 71 572 71 HOH WAT . G 6 HOH A 72 573 72 HOH WAT . G 6 HOH A 73 574 73 HOH WAT . G 6 HOH A 74 575 74 HOH WAT . G 6 HOH A 75 576 75 HOH WAT . G 6 HOH A 76 577 76 HOH WAT . G 6 HOH A 77 578 77 HOH WAT . G 6 HOH A 78 579 78 HOH WAT . G 6 HOH A 79 580 79 HOH WAT . G 6 HOH A 80 581 80 HOH WAT . G 6 HOH A 81 582 81 HOH WAT . G 6 HOH A 82 583 82 HOH WAT . G 6 HOH A 83 584 83 HOH WAT . G 6 HOH A 84 585 84 HOH WAT . G 6 HOH A 85 586 85 HOH WAT . G 6 HOH A 86 587 86 HOH WAT . G 6 HOH A 87 588 87 HOH WAT . G 6 HOH A 88 589 88 HOH WAT . G 6 HOH A 89 590 89 HOH WAT . G 6 HOH A 90 591 90 HOH WAT . G 6 HOH A 91 592 91 HOH WAT . G 6 HOH A 92 593 92 HOH WAT . G 6 HOH A 93 594 93 HOH WAT . G 6 HOH A 94 595 94 HOH WAT . G 6 HOH A 95 596 95 HOH WAT . G 6 HOH A 96 597 96 HOH WAT . G 6 HOH A 97 598 97 HOH WAT . G 6 HOH A 98 599 98 HOH WAT . G 6 HOH A 99 600 99 HOH WAT . G 6 HOH A 100 601 100 HOH WAT . G 6 HOH A 101 602 101 HOH WAT . G 6 HOH A 102 603 102 HOH WAT . G 6 HOH A 103 604 103 HOH WAT . G 6 HOH A 104 605 104 HOH WAT . G 6 HOH A 105 606 105 HOH WAT . G 6 HOH A 106 607 107 HOH WAT . G 6 HOH A 107 608 108 HOH WAT . G 6 HOH A 108 609 109 HOH WAT . G 6 HOH A 109 610 110 HOH WAT . G 6 HOH A 110 611 111 HOH WAT . G 6 HOH A 111 612 112 HOH WAT . G 6 HOH A 112 613 113 HOH WAT . G 6 HOH A 113 614 114 HOH WAT . G 6 HOH A 114 615 115 HOH WAT . G 6 HOH A 115 616 116 HOH WAT . G 6 HOH A 116 617 117 HOH WAT . G 6 HOH A 117 618 118 HOH WAT . G 6 HOH A 118 619 119 HOH WAT . G 6 HOH A 119 620 120 HOH WAT . G 6 HOH A 120 621 121 HOH WAT . G 6 HOH A 121 622 122 HOH WAT . G 6 HOH A 122 623 123 HOH WAT . G 6 HOH A 123 624 124 HOH WAT . G 6 HOH A 124 625 125 HOH WAT . G 6 HOH A 125 626 126 HOH WAT . G 6 HOH A 126 627 127 HOH WAT . G 6 HOH A 127 628 128 HOH WAT . G 6 HOH A 128 629 129 HOH WAT . G 6 HOH A 129 630 130 HOH WAT . G 6 HOH A 130 631 131 HOH WAT . G 6 HOH A 131 632 132 HOH WAT . G 6 HOH A 132 633 133 HOH WAT . G 6 HOH A 133 634 134 HOH WAT . G 6 HOH A 134 635 135 HOH WAT . G 6 HOH A 135 636 136 HOH WAT . G 6 HOH A 136 637 137 HOH WAT . G 6 HOH A 137 638 138 HOH WAT . G 6 HOH A 138 639 139 HOH WAT . G 6 HOH A 139 640 140 HOH WAT . G 6 HOH A 140 641 141 HOH WAT . G 6 HOH A 141 642 142 HOH WAT . G 6 HOH A 142 643 143 HOH WAT . G 6 HOH A 143 644 144 HOH WAT . G 6 HOH A 144 645 145 HOH WAT . G 6 HOH A 145 646 146 HOH WAT . G 6 HOH A 146 647 147 HOH WAT . G 6 HOH A 147 648 148 HOH WAT . G 6 HOH A 148 649 149 HOH WAT . G 6 HOH A 149 650 150 HOH WAT . G 6 HOH A 150 651 151 HOH WAT . G 6 HOH A 151 652 152 HOH WAT . G 6 HOH A 152 653 154 HOH WAT . G 6 HOH A 153 654 155 HOH WAT . G 6 HOH A 154 655 156 HOH WAT . G 6 HOH A 155 656 157 HOH WAT . G 6 HOH A 156 657 158 HOH WAT . G 6 HOH A 157 658 159 HOH WAT . G 6 HOH A 158 659 160 HOH WAT . G 6 HOH A 159 660 161 HOH WAT . G 6 HOH A 160 661 162 HOH WAT . G 6 HOH A 161 662 163 HOH WAT . G 6 HOH A 162 663 164 HOH WAT . G 6 HOH A 163 664 165 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . F 5 17.921 10.474 18.376 1 12.15 ? PB GDP 301 A 1 HETATM 2 O O1B GDP . . . F 5 18.642 11.295 17.351 1 12.63 ? O1B GDP 301 A 1 HETATM 3 O O2B GDP . . . F 5 18.818 10.135 19.581 1 13.63 ? O2B GDP 301 A 1 HETATM 4 O O3B GDP . . . F 5 16.665 10.984 19.075 1 10.36 ? O3B GDP 301 A 1 HETATM 5 O O3A GDP . . . F 5 17.619 8.999 17.85 1 11.72 ? O3A GDP 301 A 1 HETATM 6 P PA GDP . . . F 5 17.925 8.234 16.589 1 12.97 ? PA GDP 301 A 1 HETATM 7 O O1A GDP . . . F 5 17.368 8.893 15.336 1 12.51 ? O1A GDP 301 A 1 HETATM 8 O O2A GDP . . . F 5 19.441 8.178 16.37 1 14.68 ? O2A GDP 301 A 1 HETATM 9 O O5' GDP . . . F 5 17.291 6.888 16.803 1 13.69 ? O5' GDP 301 A 1 HETATM 10 C C5' GDP . . . F 5 17.656 6.058 17.9 1 15.36 ? C5' GDP 301 A 1 HETATM 11 C C4' GDP . . . F 5 17.427 4.542 17.543 1 14.02 ? C4' GDP 301 A 1 HETATM 12 O O4' GDP . . . F 5 16.051 4.305 17.333 1 15.63 ? O4' GDP 301 A 1 HETATM 13 C C3' GDP . . . F 5 18.177 4.096 16.26 1 17.15 ? C3' GDP 301 A 1 HETATM 14 O O3' GDP . . . F 5 18.611 2.751 16.588 1 18.27 ? O3' GDP 301 A 1 HETATM 15 C C2' GDP . . . F 5 17.073 4.122 15.211 1 16.22 ? C2' GDP 301 A 1 HETATM 16 O O2' GDP . . . F 5 17.233 3.281 14.055 1 17.82 ? O2' GDP 301 A 1 HETATM 17 C C1' GDP . . . F 5 15.838 3.748 16.031 1 14.56 ? C1' GDP 301 A 1 HETATM 18 N N9 GDP . . . F 5 14.616 4.372 15.496 1 13.93 ? N9 GDP 301 A 1 HETATM 19 C C8 GDP . . . F 5 14.332 5.701 15.19 1 13.79 ? C8 GDP 301 A 1 HETATM 20 N N7 GDP . . . F 5 13.085 5.86 14.723 1 11.36 ? N7 GDP 301 A 1 HETATM 21 C C5 GDP . . . F 5 12.498 4.542 14.72 1 11.79 ? C5 GDP 301 A 1 HETATM 22 C C6 GDP . . . F 5 11.154 3.944 14.336 1 12.56 ? C6 GDP 301 A 1 HETATM 23 O O6 GDP . . . F 5 10.244 4.655 13.911 1 12.47 ? O6 GDP 301 A 1 HETATM 24 N N1 GDP . . . F 5 10.892 2.602 14.452 1 12.49 ? N1 GDP 301 A 1 HETATM 25 C C2 GDP . . . F 5 11.842 1.675 14.927 1 13.84 ? C2 GDP 301 A 1 HETATM 26 N N2 GDP . . . F 5 11.566 0.373 15.029 1 15.11 ? N2 GDP 301 A 1 HETATM 27 N N3 GDP . . . F 5 13.088 2.219 15.285 1 13.56 ? N3 GDP 301 A 1 HETATM 28 C C4 GDP . . . F 5 13.421 3.674 15.177 1 13.47 ? C4 GDP 301 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #