data_1FZV # _model_server_result.job_id QPpJTmCBL2SPs21kXJGFlw _model_server_result.datetime_utc '2024-12-21 17:09:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fzv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 1FZV # _exptl.entry_id 1FZV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FZV _cell.length_a 62.6 _cell.length_b 62.6 _cell.length_c 84.107 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FZV _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 35 A CYS 35 1_555 A SG CYS 77 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 60 A CYS 60 1_555 B SG CYS 69 B CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf3 A SG CYS 66 A CYS 66 1_555 A SG CYS 111 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? disulf ? disulf4 A SG CYS 69 A CYS 69 1_555 B SG CYS 60 B CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf5 A SG CYS 70 A CYS 70 1_555 A SG CYS 113 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 B SG CYS 35 B CYS 35 1_555 B SG CYS 77 B CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 B SG CYS 66 B CYS 66 1_555 B SG CYS 111 B CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf8 B SG CYS 70 B CYS 70 1_555 B SG CYS 113 B CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 1FZV _atom_sites.fract_transf_matrix[1][1] 0.015974 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015974 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01189 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD A 1 201 1 MPD MPD . D 2 MPD B 1 202 2 MPD MPD . E 3 HOH A 1 202 3 HOH WAT . E 3 HOH A 2 203 4 HOH WAT . E 3 HOH A 3 204 6 HOH WAT . E 3 HOH A 4 205 7 HOH WAT . E 3 HOH A 5 206 8 HOH WAT . E 3 HOH A 6 207 10 HOH WAT . E 3 HOH A 7 208 13 HOH WAT . E 3 HOH A 8 209 14 HOH WAT . E 3 HOH A 9 210 16 HOH WAT . E 3 HOH A 10 211 19 HOH WAT . E 3 HOH A 11 212 21 HOH WAT . E 3 HOH A 12 213 22 HOH WAT . E 3 HOH A 13 214 27 HOH WAT . E 3 HOH A 14 215 31 HOH WAT . E 3 HOH A 15 216 32 HOH WAT . E 3 HOH A 16 217 33 HOH WAT . E 3 HOH A 17 218 34 HOH WAT . E 3 HOH A 18 219 39 HOH WAT . E 3 HOH A 19 220 40 HOH WAT . E 3 HOH A 20 221 42 HOH WAT . E 3 HOH A 21 222 44 HOH WAT . E 3 HOH A 22 223 45 HOH WAT . E 3 HOH A 23 224 46 HOH WAT . E 3 HOH A 24 225 47 HOH WAT . E 3 HOH A 25 226 48 HOH WAT . E 3 HOH A 26 227 49 HOH WAT . E 3 HOH A 27 228 55 HOH WAT . E 3 HOH A 28 229 56 HOH WAT . E 3 HOH A 29 230 58 HOH WAT . E 3 HOH A 30 231 63 HOH WAT . E 3 HOH A 31 232 64 HOH WAT . E 3 HOH A 32 233 68 HOH WAT . E 3 HOH A 33 234 69 HOH WAT . E 3 HOH A 34 235 70 HOH WAT . E 3 HOH A 35 236 72 HOH WAT . E 3 HOH A 36 237 74 HOH WAT . E 3 HOH A 37 238 77 HOH WAT . E 3 HOH A 38 239 78 HOH WAT . E 3 HOH A 39 240 80 HOH WAT . E 3 HOH A 40 241 84 HOH WAT . E 3 HOH A 41 242 89 HOH WAT . E 3 HOH A 42 243 90 HOH WAT . E 3 HOH A 43 244 91 HOH WAT . E 3 HOH A 44 245 92 HOH WAT . E 3 HOH A 45 246 94 HOH WAT . E 3 HOH A 46 247 95 HOH WAT . E 3 HOH A 47 248 96 HOH WAT . E 3 HOH A 48 249 97 HOH WAT . E 3 HOH A 49 250 98 HOH WAT . E 3 HOH A 50 251 100 HOH WAT . E 3 HOH A 51 252 101 HOH WAT . E 3 HOH A 52 253 104 HOH WAT . E 3 HOH A 53 254 106 HOH WAT . E 3 HOH A 54 255 108 HOH WAT . E 3 HOH A 55 256 109 HOH WAT . E 3 HOH A 56 257 110 HOH WAT . E 3 HOH A 57 258 111 HOH WAT . E 3 HOH A 58 259 114 HOH WAT . E 3 HOH A 59 260 116 HOH WAT . E 3 HOH A 60 261 120 HOH WAT . E 3 HOH A 61 262 121 HOH WAT . E 3 HOH A 62 263 123 HOH WAT . E 3 HOH A 63 264 126 HOH WAT . E 3 HOH A 64 265 128 HOH WAT . E 3 HOH A 65 266 131 HOH WAT . F 3 HOH B 1 203 1 HOH WAT . F 3 HOH B 2 204 2 HOH WAT . F 3 HOH B 3 205 5 HOH WAT . F 3 HOH B 4 206 9 HOH WAT . F 3 HOH B 5 207 11 HOH WAT . F 3 HOH B 6 208 12 HOH WAT . F 3 HOH B 7 209 15 HOH WAT . F 3 HOH B 8 210 17 HOH WAT . F 3 HOH B 9 211 18 HOH WAT . F 3 HOH B 10 212 20 HOH WAT . F 3 HOH B 11 213 23 HOH WAT . F 3 HOH B 12 214 24 HOH WAT . F 3 HOH B 13 215 25 HOH WAT . F 3 HOH B 14 216 26 HOH WAT . F 3 HOH B 15 217 28 HOH WAT . F 3 HOH B 16 218 29 HOH WAT . F 3 HOH B 17 219 30 HOH WAT . F 3 HOH B 18 220 35 HOH WAT . F 3 HOH B 19 221 36 HOH WAT . F 3 HOH B 20 222 37 HOH WAT . F 3 HOH B 21 223 38 HOH WAT . F 3 HOH B 22 224 41 HOH WAT . F 3 HOH B 23 225 43 HOH WAT . F 3 HOH B 24 226 50 HOH WAT . F 3 HOH B 25 227 51 HOH WAT . F 3 HOH B 26 228 52 HOH WAT . F 3 HOH B 27 229 53 HOH WAT . F 3 HOH B 28 230 54 HOH WAT . F 3 HOH B 29 231 57 HOH WAT . F 3 HOH B 30 232 59 HOH WAT . F 3 HOH B 31 233 60 HOH WAT . F 3 HOH B 32 234 61 HOH WAT . F 3 HOH B 33 235 62 HOH WAT . F 3 HOH B 34 236 65 HOH WAT . F 3 HOH B 35 237 66 HOH WAT . F 3 HOH B 36 238 67 HOH WAT . F 3 HOH B 37 239 71 HOH WAT . F 3 HOH B 38 240 73 HOH WAT . F 3 HOH B 39 241 75 HOH WAT . F 3 HOH B 40 242 76 HOH WAT . F 3 HOH B 41 243 79 HOH WAT . F 3 HOH B 42 244 81 HOH WAT . F 3 HOH B 43 245 82 HOH WAT . F 3 HOH B 44 246 83 HOH WAT . F 3 HOH B 45 247 85 HOH WAT . F 3 HOH B 46 248 86 HOH WAT . F 3 HOH B 47 249 87 HOH WAT . F 3 HOH B 48 250 88 HOH WAT . F 3 HOH B 49 251 93 HOH WAT . F 3 HOH B 50 252 99 HOH WAT . F 3 HOH B 51 253 102 HOH WAT . F 3 HOH B 52 254 103 HOH WAT . F 3 HOH B 53 255 105 HOH WAT . F 3 HOH B 54 256 107 HOH WAT . F 3 HOH B 55 257 112 HOH WAT . F 3 HOH B 56 258 113 HOH WAT . F 3 HOH B 57 259 115 HOH WAT . F 3 HOH B 58 260 117 HOH WAT . F 3 HOH B 59 261 118 HOH WAT . F 3 HOH B 60 262 119 HOH WAT . F 3 HOH B 61 263 122 HOH WAT . F 3 HOH B 62 264 124 HOH WAT . F 3 HOH B 63 265 125 HOH WAT . F 3 HOH B 64 266 127 HOH WAT . F 3 HOH B 65 267 129 HOH WAT . F 3 HOH B 66 268 130 HOH WAT . F 3 HOH B 67 269 132 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . D 2 -1.494 56.044 -0.309 1 31.48 ? C1 MPD 202 B 1 HETATM 2 C C2 MPD . . . D 2 -0.702 57.157 -0.966 1 32.01 ? C2 MPD 202 B 1 HETATM 3 O O2 MPD . . . D 2 -0.164 57.968 0.096 1 31.36 ? O2 MPD 202 B 1 HETATM 4 C CM MPD . . . D 2 0.415 56.619 -1.78 1 31.66 ? CM MPD 202 B 1 HETATM 5 C C3 MPD . . . D 2 -1.575 58.072 -1.865 1 31.5 ? C3 MPD 202 B 1 HETATM 6 C C4 MPD . . . D 2 -2.691 58.868 -1.17 1 31.92 ? C4 MPD 202 B 1 HETATM 7 O O4 MPD . . . D 2 -2.158 59.76 -0.226 1 33.34 ? O4 MPD 202 B 1 HETATM 8 C C5 MPD . . . D 2 -3.484 59.707 -2.151 1 31.05 ? C5 MPD 202 B 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #