data_1FZZ # _model_server_result.job_id 36l1_PYoQB3qvJMI_kn2sw _model_server_result.datetime_utc '2024-11-25 23:48:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fzz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":395}' # _entry.id 1FZZ # _exptl.entry_id 1FZZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.522 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(5-AMINO-6-OXO-2-PHENYL-6H-PYRIMIDIN-1-YL)-N-[2-(5-TERT-BUTYL-1,3,4-OXADIAZOL-2-YL)-1-(METHYLETHYL)-2-HYDROXYETHYL]ACETAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FZZ _cell.length_a 51.038 _cell.length_b 58.5 _cell.length_c 75.643 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FZZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 42 1_555 A SG CYS 46 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 158 A CYS 168 1_555 A SG CYS 174 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 214 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A OG SER 188 A SER 195 1_555 B C1 681 . A 681 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A OG SER 188 A SER 195 1_555 B O1 681 . A 681 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'C23 H30 N6 O4' _chem_comp.formula_weight 454.522 _chem_comp.id 681 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(5-AMINO-6-OXO-2-PHENYL-6H-PYRIMIDIN-1-YL)-N-[2-(5-TERT-BUTYL-1,3,4-OXADIAZOL-2-YL)-1-(METHYLETHYL)-2-HYDROXYETHYL]ACETAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ONO-6818 # _atom_sites.entry_id 1FZZ _atom_sites.fract_transf_matrix[1][1] 0.019593 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 681 A 1 395 195 681 681 . C 3 HOH A 1 246 246 HOH HOH . C 3 HOH A 2 247 247 HOH HOH . C 3 HOH A 3 248 248 HOH HOH . C 3 HOH A 4 249 249 HOH HOH . C 3 HOH A 5 250 250 HOH HOH . C 3 HOH A 6 251 251 HOH HOH . C 3 HOH A 7 252 252 HOH HOH . C 3 HOH A 8 253 253 HOH HOH . C 3 HOH A 9 254 254 HOH HOH . C 3 HOH A 10 255 255 HOH HOH . C 3 HOH A 11 256 256 HOH HOH . C 3 HOH A 12 257 257 HOH HOH . C 3 HOH A 13 258 258 HOH HOH . C 3 HOH A 14 259 259 HOH HOH . C 3 HOH A 15 260 260 HOH HOH . C 3 HOH A 16 261 261 HOH HOH . C 3 HOH A 17 262 262 HOH HOH . C 3 HOH A 18 263 263 HOH HOH . C 3 HOH A 19 264 264 HOH HOH . C 3 HOH A 20 265 265 HOH HOH . C 3 HOH A 21 266 266 HOH HOH . C 3 HOH A 22 267 267 HOH HOH . C 3 HOH A 23 268 268 HOH HOH . C 3 HOH A 24 269 269 HOH HOH . C 3 HOH A 25 270 270 HOH HOH . C 3 HOH A 26 271 271 HOH HOH . C 3 HOH A 27 272 272 HOH HOH . C 3 HOH A 28 273 273 HOH HOH . C 3 HOH A 29 274 274 HOH HOH . C 3 HOH A 30 275 275 HOH HOH . C 3 HOH A 31 276 276 HOH HOH . C 3 HOH A 32 277 277 HOH HOH . C 3 HOH A 33 278 278 HOH HOH . C 3 HOH A 34 279 279 HOH HOH . C 3 HOH A 35 280 280 HOH HOH . C 3 HOH A 36 281 281 HOH HOH . C 3 HOH A 37 282 282 HOH HOH . C 3 HOH A 38 283 283 HOH HOH . C 3 HOH A 39 284 284 HOH HOH . C 3 HOH A 40 285 285 HOH HOH . C 3 HOH A 41 286 286 HOH HOH . C 3 HOH A 42 287 287 HOH HOH . C 3 HOH A 43 288 288 HOH HOH . C 3 HOH A 44 289 289 HOH HOH . C 3 HOH A 45 290 290 HOH HOH . C 3 HOH A 46 291 291 HOH HOH . C 3 HOH A 47 292 292 HOH HOH . C 3 HOH A 48 293 293 HOH HOH . C 3 HOH A 49 294 294 HOH HOH . C 3 HOH A 50 295 295 HOH HOH . C 3 HOH A 51 296 296 HOH HOH . C 3 HOH A 52 297 297 HOH HOH . C 3 HOH A 53 298 298 HOH HOH . C 3 HOH A 54 299 299 HOH HOH . C 3 HOH A 55 300 300 HOH HOH . C 3 HOH A 56 301 301 HOH HOH . C 3 HOH A 57 302 302 HOH HOH . C 3 HOH A 58 303 303 HOH HOH . C 3 HOH A 59 304 304 HOH HOH . C 3 HOH A 60 305 305 HOH HOH . C 3 HOH A 61 306 306 HOH HOH . C 3 HOH A 62 307 307 HOH HOH . C 3 HOH A 63 308 308 HOH HOH . C 3 HOH A 64 309 309 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 681 . . . B 2 -8.524 23.669 37.586 1 20.93 ? C1 681 395 A 1 HETATM 2 O O1 681 . . . B 2 -8.329 24.877 37.003 1 21.72 ? O1 681 395 A 1 HETATM 3 C C2 681 . . . B 2 -7.633 22.952 36.531 1 19.82 ? C2 681 395 A 1 HETATM 4 N N1 681 . . . B 2 -6.845 21.959 36.727 1 18.19 ? N1 681 395 A 1 HETATM 5 O O2 681 . . . B 2 -7.934 23.08 35.203 1 19.76 ? O2 681 395 A 1 HETATM 6 N N2 681 . . . B 2 -6.599 21.372 35.472 1 19.39 ? N2 681 395 A 1 HETATM 7 C C3 681 . . . B 2 -7.248 22.053 34.628 1 21.02 ? C3 681 395 A 1 HETATM 8 C C4 681 . . . B 2 -7.253 21.913 33.142 1 22.35 ? C4 681 395 A 1 HETATM 9 C C5 681 . . . B 2 -6.635 23.145 32.518 1 21.87 ? C5 681 395 A 1 HETATM 10 C C6 681 . . . B 2 -6.445 20.699 32.756 1 23.99 ? C6 681 395 A 1 HETATM 11 C C7 681 . . . B 2 -8.672 21.748 32.657 1 19.69 ? C7 681 395 A 1 HETATM 12 C CVA 681 . . . B 2 -10.05 23.736 37.404 1 20.36 ? CVA 681 395 A 1 HETATM 13 C CVB 681 . . . B 2 -10.582 25.168 37.78 1 18.78 ? CVB 681 395 A 1 HETATM 14 C CV1 681 . . . B 2 -10.438 25.407 39.274 1 17.44 ? CV1 681 395 A 1 HETATM 15 C CV2 681 . . . B 2 -12.042 25.28 37.391 1 15.09 ? CV2 681 395 A 1 HETATM 16 N NV 681 . . . B 2 -10.643 22.752 38.284 1 20.11 ? NV 681 395 A 1 HETATM 17 C COG 681 . . . B 2 -10.725 21.511 37.824 1 21.97 ? COG 681 395 A 1 HETATM 18 O OCG 681 . . . B 2 -10.412 21.205 36.673 1 23.57 ? OCG 681 395 A 1 HETATM 19 C CAG 681 . . . B 2 -11.273 20.482 38.793 1 25.04 ? CAG 681 395 A 1 HETATM 20 N N2X 681 . . . B 2 -12.279 19.618 38.192 1 24.08 ? N2X 681 395 A 1 HETATM 21 C C1X 681 . . . B 2 -12.024 18.279 37.827 1 25.32 ? C1X 681 395 A 1 HETATM 22 N N1X 681 . . . B 2 -12.981 17.474 37.515 1 28.33 ? N1X 681 395 A 1 HETATM 23 C C2X 681 . . . B 2 -14.271 17.955 37.545 1 27.54 ? C2X 681 395 A 1 HETATM 24 C C3X 681 . . . B 2 -14.588 19.254 37.892 1 25.65 ? C3X 681 395 A 1 HETATM 25 C C4X 681 . . . B 2 -13.517 20.152 38.241 1 23.58 ? C4X 681 395 A 1 HETATM 26 O O1X 681 . . . B 2 -13.682 21.344 38.492 1 24.07 ? O1X 681 395 A 1 HETATM 27 N N3X 681 . . . B 2 -15.856 19.764 38.042 1 26.58 ? N3X 681 395 A 1 HETATM 28 C C5X 681 . . . B 2 -10.6 17.805 37.704 1 22.98 ? C5X 681 395 A 1 HETATM 29 C C6X 681 . . . B 2 -10.162 16.703 38.433 1 20.36 ? C6X 681 395 A 1 HETATM 30 C C7X 681 . . . B 2 -8.875 16.205 38.259 1 19.78 ? C7X 681 395 A 1 HETATM 31 C C8X 681 . . . B 2 -8.01 16.814 37.347 1 21.69 ? C8X 681 395 A 1 HETATM 32 C C9X 681 . . . B 2 -8.44 17.919 36.613 1 21.48 ? C9X 681 395 A 1 HETATM 33 C C0X 681 . . . B 2 -9.733 18.409 36.795 1 21.11 ? C0X 681 395 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #