data_1G08 # _model_server_result.job_id QeRm-ql-0t2g-92CdOat2Q _model_server_result.datetime_utc '2024-11-16 11:46:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g08 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":142}' # _entry.id 1G08 # _exptl.entry_id 1G08 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1G08 _cell.length_a 79.4 _cell.length_b 110.9 _cell.length_c 66.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G08 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 E FE HEM . A HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc2 E FE HEM . A HEM 142 1_555 F C CMO . A CMO 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? metalc ? metalc3 E FE HEM . A HEM 142 1_555 F O CMO . A CMO 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc4 B NE2 HIS 91 B HIS 92 1_555 G FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc5 G FE HEM . B HEM 147 1_555 H C CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? metalc ? metalc6 G FE HEM . B HEM 147 1_555 H O CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc7 C NE2 HIS 87 C HIS 87 1_555 I FE HEM . C HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc8 I FE HEM . C HEM 142 1_555 J C CMO . C CMO 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.739 ? metalc ? metalc9 I FE HEM . C HEM 142 1_555 J O CMO . C CMO 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.911 ? metalc ? metalc10 D NE2 HIS 91 D HIS 92 1_555 K FE HEM . D HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc11 K FE HEM . D HEM 147 1_555 L C CMO . D CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.746 ? metalc ? metalc12 K FE HEM . D HEM 147 1_555 L O CMO . D CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 130 n n CHA C4D HEM doub 131 n n CHA HHA HEM sing 132 n n CHB C4A HEM sing 133 n n CHB C1B HEM doub 134 n n CHB HHB HEM sing 135 n n CHC C4B HEM sing 136 n n CHC C1C HEM doub 137 n n CHC HHC HEM sing 138 n n CHD C4C HEM doub 139 n n CHD C1D HEM sing 140 n n CHD HHD HEM sing 141 n n C1A C2A HEM doub 142 n y C1A NA HEM sing 143 n y C2A C3A HEM sing 144 n y C2A CAA HEM sing 145 n n C3A C4A HEM doub 146 n y C3A CMA HEM sing 147 n n C4A NA HEM sing 148 n y CMA HMA HEM sing 149 n n CMA HMAA HEM sing 150 n n CMA HMAB HEM sing 151 n n CAA CBA HEM sing 152 n n CAA HAA HEM sing 153 n n CAA HAAA HEM sing 154 n n CBA CGA HEM sing 155 n n CBA HBA HEM sing 156 n n CBA HBAA HEM sing 157 n n CGA O1A HEM doub 158 n n CGA O2A HEM sing 159 n n C1B C2B HEM sing 160 n n C1B NB HEM sing 161 n n C2B C3B HEM doub 162 n n C2B CMB HEM sing 163 n n C3B C4B HEM sing 164 n n C3B CAB HEM sing 165 n n C4B NB HEM doub 166 n n CMB HMB HEM sing 167 n n CMB HMBA HEM sing 168 n n CMB HMBB HEM sing 169 n n CAB CBB HEM doub 170 n n CAB HAB HEM sing 171 n n CBB HBB HEM sing 172 n n CBB HBBA HEM sing 173 n n C1C C2C HEM sing 174 n y C1C NC HEM sing 175 n y C2C C3C HEM doub 176 n y C2C CMC HEM sing 177 n n C3C C4C HEM sing 178 n y C3C CAC HEM sing 179 n n C4C NC HEM sing 180 n y CMC HMC HEM sing 181 n n CMC HMCA HEM sing 182 n n CMC HMCB HEM sing 183 n n CAC CBC HEM doub 184 n n CAC HAC HEM sing 185 n n CBC HBC HEM sing 186 n n CBC HBCA HEM sing 187 n n C1D C2D HEM sing 188 n n C1D ND HEM doub 189 n n C2D C3D HEM doub 190 n n C2D CMD HEM sing 191 n n C3D C4D HEM sing 192 n n C3D CAD HEM sing 193 n n C4D ND HEM sing 194 n n CMD HMD HEM sing 195 n n CMD HMDA HEM sing 196 n n CMD HMDB HEM sing 197 n n CAD CBD HEM sing 198 n n CAD HAD HEM sing 199 n n CAD HADA HEM sing 200 n n CBD CGD HEM sing 201 n n CBD HBD HEM sing 202 n n CBD HBDA HEM sing 203 n n CGD O1D HEM doub 204 n n CGD O2D HEM sing 205 n n O2A H2A HEM sing 206 n n O2D H2D HEM sing 207 n n FE NA HEM sing 208 n n FE NB HEM sing 209 n n FE NC HEM sing 210 n n FE ND HEM sing 211 n n # _atom_sites.entry_id 1G08 _atom_sites.fract_transf_matrix[1][1] 0.012594 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009017 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015106 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEM A 1 142 142 HEM HEM . F 4 CMO A 1 143 143 CMO CMO . G 3 HEM B 1 147 147 HEM HEM . H 4 CMO B 1 148 148 CMO CMO . I 3 HEM C 1 142 142 HEM HEM . J 4 CMO C 1 143 143 CMO CMO . K 3 HEM D 1 147 147 HEM HEM . L 4 CMO D 1 148 148 CMO CMO . M 5 HOH A 1 144 1 HOH HOH . M 5 HOH A 2 145 8 HOH HOH . M 5 HOH A 3 146 10 HOH HOH . M 5 HOH A 4 147 12 HOH HOH . M 5 HOH A 5 148 16 HOH HOH . M 5 HOH A 6 149 19 HOH HOH . M 5 HOH A 7 150 23 HOH HOH . M 5 HOH A 8 151 27 HOH HOH . M 5 HOH A 9 152 33 HOH HOH . M 5 HOH A 10 153 36 HOH HOH . M 5 HOH A 11 154 37 HOH HOH . M 5 HOH A 12 155 46 HOH HOH . M 5 HOH A 13 156 54 HOH HOH . M 5 HOH A 14 157 55 HOH HOH . M 5 HOH A 15 158 59 HOH HOH . M 5 HOH A 16 159 68 HOH HOH . M 5 HOH A 17 160 69 HOH HOH . M 5 HOH A 18 161 76 HOH HOH . M 5 HOH A 19 162 78 HOH HOH . M 5 HOH A 20 163 81 HOH HOH . M 5 HOH A 21 164 82 HOH HOH . M 5 HOH A 22 165 83 HOH HOH . M 5 HOH A 23 166 85 HOH HOH . M 5 HOH A 24 167 86 HOH HOH . M 5 HOH A 25 168 87 HOH HOH . M 5 HOH A 26 169 89 HOH HOH . M 5 HOH A 27 170 95 HOH HOH . N 5 HOH B 1 149 13 HOH HOH . N 5 HOH B 2 150 15 HOH HOH . N 5 HOH B 3 151 18 HOH HOH . N 5 HOH B 4 152 24 HOH HOH . N 5 HOH B 5 153 32 HOH HOH . N 5 HOH B 6 154 35 HOH HOH . N 5 HOH B 7 155 48 HOH HOH . N 5 HOH B 8 156 56 HOH HOH . N 5 HOH B 9 157 60 HOH HOH . N 5 HOH B 10 158 63 HOH HOH . N 5 HOH B 11 159 66 HOH HOH . N 5 HOH B 12 160 67 HOH HOH . N 5 HOH B 13 161 71 HOH HOH . N 5 HOH B 14 162 72 HOH HOH . N 5 HOH B 15 163 73 HOH HOH . N 5 HOH B 16 164 84 HOH HOH . N 5 HOH B 17 165 91 HOH HOH . O 5 HOH C 1 144 2 HOH HOH . O 5 HOH C 2 145 3 HOH HOH . O 5 HOH C 3 146 4 HOH HOH . O 5 HOH C 4 147 6 HOH HOH . O 5 HOH C 5 148 7 HOH HOH . O 5 HOH C 6 149 9 HOH HOH . O 5 HOH C 7 150 17 HOH HOH . O 5 HOH C 8 151 22 HOH HOH . O 5 HOH C 9 152 25 HOH HOH . O 5 HOH C 10 153 26 HOH HOH . O 5 HOH C 11 154 30 HOH HOH . O 5 HOH C 12 155 34 HOH HOH . O 5 HOH C 13 156 42 HOH HOH . O 5 HOH C 14 157 47 HOH HOH . O 5 HOH C 15 158 50 HOH HOH . O 5 HOH C 16 159 51 HOH HOH . O 5 HOH C 17 160 53 HOH HOH . O 5 HOH C 18 161 61 HOH HOH . O 5 HOH C 19 162 62 HOH HOH . O 5 HOH C 20 163 64 HOH HOH . O 5 HOH C 21 164 70 HOH HOH . O 5 HOH C 22 165 74 HOH HOH . O 5 HOH C 23 166 75 HOH HOH . O 5 HOH C 24 167 77 HOH HOH . O 5 HOH C 25 168 79 HOH HOH . O 5 HOH C 26 169 80 HOH HOH . O 5 HOH C 27 170 92 HOH HOH . O 5 HOH C 28 171 93 HOH HOH . P 5 HOH D 1 149 5 HOH HOH . P 5 HOH D 2 150 11 HOH HOH . P 5 HOH D 3 151 14 HOH HOH . P 5 HOH D 4 152 20 HOH HOH . P 5 HOH D 5 153 21 HOH HOH . P 5 HOH D 6 154 28 HOH HOH . P 5 HOH D 7 155 29 HOH HOH . P 5 HOH D 8 156 31 HOH HOH . P 5 HOH D 9 157 38 HOH HOH . P 5 HOH D 10 158 39 HOH HOH . P 5 HOH D 11 159 40 HOH HOH . P 5 HOH D 12 160 41 HOH HOH . P 5 HOH D 13 161 43 HOH HOH . P 5 HOH D 14 162 44 HOH HOH . P 5 HOH D 15 163 45 HOH HOH . P 5 HOH D 16 164 49 HOH HOH . P 5 HOH D 17 165 52 HOH HOH . P 5 HOH D 18 166 57 HOH HOH . P 5 HOH D 19 167 58 HOH HOH . P 5 HOH D 20 168 65 HOH HOH . P 5 HOH D 21 169 88 HOH HOH . P 5 HOH D 22 170 90 HOH HOH . P 5 HOH D 23 171 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . I 3 28.405 61.541 27.679 1 15.96 ? CHA HEM 142 C 1 HETATM 2 C CHB HEM . . . I 3 26.285 57.515 29.287 1 17.28 ? CHB HEM 142 C 1 HETATM 3 C CHC HEM . . . I 3 30.334 55.062 28.212 1 15.93 ? CHC HEM 142 C 1 HETATM 4 C CHD HEM . . . I 3 32.639 59.225 27.33 1 16.5 ? CHD HEM 142 C 1 HETATM 5 C C1A HEM . . . I 3 27.481 60.688 28.232 1 15.94 ? C1A HEM 142 C 1 HETATM 6 C C2A HEM . . . I 3 26.207 61.048 28.8 1 16.21 ? C2A HEM 142 C 1 HETATM 7 C C3A HEM . . . I 3 25.611 59.947 29.215 1 14.24 ? C3A HEM 142 C 1 HETATM 8 C C4A HEM . . . I 3 26.519 58.852 28.985 1 13.99 ? C4A HEM 142 C 1 HETATM 9 C CMA HEM . . . I 3 24.227 59.784 29.872 1 16.75 ? CMA HEM 142 C 1 HETATM 10 C CAA HEM . . . I 3 25.704 62.507 28.818 1 19.52 ? CAA HEM 142 C 1 HETATM 11 C CBA HEM . . . I 3 24.949 62.928 27.572 1 31.27 ? CBA HEM 142 C 1 HETATM 12 C CGA HEM . . . I 3 23.969 64.047 27.856 1 39.68 ? CGA HEM 142 C 1 HETATM 13 O O1A HEM . . . I 3 23.03 63.764 28.646 1 48.98 ? O1A HEM 142 C 1 HETATM 14 O O2A HEM . . . I 3 24.219 65.127 27.293 1 44.86 ? O2A HEM 142 C 1 HETATM 15 C C1B HEM . . . I 3 27.195 56.476 29.078 1 16.12 ? C1B HEM 142 C 1 HETATM 16 C C2B HEM . . . I 3 26.927 55.057 29.28 1 14.33 ? C2B HEM 142 C 1 HETATM 17 C C3B HEM . . . I 3 28.041 54.381 28.996 1 13.71 ? C3B HEM 142 C 1 HETATM 18 C C4B HEM . . . I 3 29.042 55.354 28.592 1 17.38 ? C4B HEM 142 C 1 HETATM 19 C CMB HEM . . . I 3 25.553 54.546 29.76 1 14.24 ? CMB HEM 142 C 1 HETATM 20 C CAB HEM . . . I 3 28.333 52.87 29.007 1 16.34 ? CAB HEM 142 C 1 HETATM 21 C CBB HEM . . . I 3 27.947 52.076 30.001 1 19.67 ? CBB HEM 142 C 1 HETATM 22 C C1C HEM . . . I 3 31.327 55.974 27.93 1 15.4 ? C1C HEM 142 C 1 HETATM 23 C C2C HEM . . . I 3 32.727 55.669 27.738 1 14.23 ? C2C HEM 142 C 1 HETATM 24 C C3C HEM . . . I 3 33.356 56.83 27.497 1 14.07 ? C3C HEM 142 C 1 HETATM 25 C C4C HEM . . . I 3 32.369 57.886 27.527 1 14.59 ? C4C HEM 142 C 1 HETATM 26 C CMC HEM . . . I 3 33.28 54.226 27.81 1 10.28 ? CMC HEM 142 C 1 HETATM 27 C CAC HEM . . . I 3 34.848 57.125 27.226 1 14.42 ? CAC HEM 142 C 1 HETATM 28 C CBC HEM . . . I 3 35.757 56.711 28.128 1 11.94 ? CBC HEM 142 C 1 HETATM 29 C C1D HEM . . . I 3 31.681 60.218 27.33 1 18.2 ? C1D HEM 142 C 1 HETATM 30 C C2D HEM . . . I 3 31.932 61.622 27.022 1 17.11 ? C2D HEM 142 C 1 HETATM 31 C C3D HEM . . . I 3 30.756 62.241 27.088 1 18.46 ? C3D HEM 142 C 1 HETATM 32 C C4D HEM . . . I 3 29.741 61.294 27.47 1 16.16 ? C4D HEM 142 C 1 HETATM 33 C CMD HEM . . . I 3 33.337 62.152 26.683 1 14.64 ? CMD HEM 142 C 1 HETATM 34 C CAD HEM . . . I 3 30.441 63.761 26.914 1 19.4 ? CAD HEM 142 C 1 HETATM 35 C CBD HEM . . . I 3 30.726 64.513 28.229 1 27.4 ? CBD HEM 142 C 1 HETATM 36 C CGD HEM . . . I 3 30.051 65.854 28.356 1 34.24 ? CGD HEM 142 C 1 HETATM 37 O O1D HEM . . . I 3 30.786 66.846 28.158 1 32.5 ? O1D HEM 142 C 1 HETATM 38 O O2D HEM . . . I 3 28.824 65.854 28.664 1 41.27 ? O2D HEM 142 C 1 HETATM 39 N NA HEM . . . I 3 27.665 59.326 28.383 1 14.05 ? NA HEM 142 C 1 HETATM 40 N NB HEM . . . I 3 28.495 56.637 28.655 1 15.14 ? NB HEM 142 C 1 HETATM 41 N NC HEM . . . I 3 31.121 57.345 27.795 1 15.66 ? NC HEM 142 C 1 HETATM 42 N ND HEM . . . I 3 30.329 60.046 27.605 1 17.87 ? ND HEM 142 C 1 HETATM 43 FE FE HEM . . . I 3 29.413 58.354 28.151 1 15.53 ? FE HEM 142 C 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #