data_1G0B # _model_server_result.job_id 1zWEWcup5hJEHb07ACmtbg _model_server_result.datetime_utc '2024-11-16 10:44:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g0b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":142}' # _entry.id 1G0B # _exptl.entry_id 1G0B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.7 _cell.angle_gamma 90 _cell.entry_id 1G0B _cell.length_a 108.8 _cell.length_b 63.2 _cell.length_c 54.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G0B _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 89.500274 0 51.075244 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc2 C FE HEM . A HEM 142 1_555 D C CMO . A CMO 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.753 ? metalc ? metalc3 C FE HEM . A HEM 142 1_555 D O CMO . A CMO 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 E FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc5 E FE HEM . B HEM 147 1_555 F C CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? metalc ? metalc6 E FE HEM . B HEM 147 1_555 F O CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 130 n n CHA C4D HEM doub 131 n n CHA HHA HEM sing 132 n n CHB C4A HEM sing 133 n n CHB C1B HEM doub 134 n n CHB HHB HEM sing 135 n n CHC C4B HEM sing 136 n n CHC C1C HEM doub 137 n n CHC HHC HEM sing 138 n n CHD C4C HEM doub 139 n n CHD C1D HEM sing 140 n n CHD HHD HEM sing 141 n n C1A C2A HEM doub 142 n y C1A NA HEM sing 143 n y C2A C3A HEM sing 144 n y C2A CAA HEM sing 145 n n C3A C4A HEM doub 146 n y C3A CMA HEM sing 147 n n C4A NA HEM sing 148 n y CMA HMA HEM sing 149 n n CMA HMAA HEM sing 150 n n CMA HMAB HEM sing 151 n n CAA CBA HEM sing 152 n n CAA HAA HEM sing 153 n n CAA HAAA HEM sing 154 n n CBA CGA HEM sing 155 n n CBA HBA HEM sing 156 n n CBA HBAA HEM sing 157 n n CGA O1A HEM doub 158 n n CGA O2A HEM sing 159 n n C1B C2B HEM sing 160 n n C1B NB HEM sing 161 n n C2B C3B HEM doub 162 n n C2B CMB HEM sing 163 n n C3B C4B HEM sing 164 n n C3B CAB HEM sing 165 n n C4B NB HEM doub 166 n n CMB HMB HEM sing 167 n n CMB HMBA HEM sing 168 n n CMB HMBB HEM sing 169 n n CAB CBB HEM doub 170 n n CAB HAB HEM sing 171 n n CBB HBB HEM sing 172 n n CBB HBBA HEM sing 173 n n C1C C2C HEM sing 174 n y C1C NC HEM sing 175 n y C2C C3C HEM doub 176 n y C2C CMC HEM sing 177 n n C3C C4C HEM sing 178 n y C3C CAC HEM sing 179 n n C4C NC HEM sing 180 n y CMC HMC HEM sing 181 n n CMC HMCA HEM sing 182 n n CMC HMCB HEM sing 183 n n CAC CBC HEM doub 184 n n CAC HAC HEM sing 185 n n CBC HBC HEM sing 186 n n CBC HBCA HEM sing 187 n n C1D C2D HEM sing 188 n n C1D ND HEM doub 189 n n C2D C3D HEM doub 190 n n C2D CMD HEM sing 191 n n C3D C4D HEM sing 192 n n C3D CAD HEM sing 193 n n C4D ND HEM sing 194 n n CMD HMD HEM sing 195 n n CMD HMDA HEM sing 196 n n CMD HMDB HEM sing 197 n n CAD CBD HEM sing 198 n n CAD HAD HEM sing 199 n n CAD HADA HEM sing 200 n n CBD CGD HEM sing 201 n n CBD HBD HEM sing 202 n n CBD HBDA HEM sing 203 n n CGD O1D HEM doub 204 n n CGD O2D HEM sing 205 n n O2A H2A HEM sing 206 n n O2D H2D HEM sing 207 n n FE NA HEM sing 208 n n FE NB HEM sing 209 n n FE NC HEM sing 210 n n FE ND HEM sing 211 n n # _atom_sites.entry_id 1G0B _atom_sites.fract_transf_matrix[1][1] 0.009191 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003473 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019579 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 142 142 HEM HEM . D 4 CMO A 1 143 143 CMO CMO . E 3 HEM B 1 147 147 HEM HEM . F 4 CMO B 1 148 148 CMO CMO . G 5 HOH A 1 144 1 HOH HOH . G 5 HOH A 2 145 2 HOH HOH . G 5 HOH A 3 146 3 HOH HOH . G 5 HOH A 4 147 4 HOH HOH . G 5 HOH A 5 148 5 HOH HOH . G 5 HOH A 6 149 7 HOH HOH . G 5 HOH A 7 150 10 HOH HOH . G 5 HOH A 8 151 11 HOH HOH . G 5 HOH A 9 152 12 HOH HOH . G 5 HOH A 10 153 17 HOH HOH . G 5 HOH A 11 154 19 HOH HOH . G 5 HOH A 12 155 27 HOH HOH . G 5 HOH A 13 156 28 HOH HOH . G 5 HOH A 14 157 32 HOH HOH . G 5 HOH A 15 158 33 HOH HOH . G 5 HOH A 16 159 34 HOH HOH . G 5 HOH A 17 160 36 HOH HOH . G 5 HOH A 18 161 38 HOH HOH . G 5 HOH A 19 162 41 HOH HOH . G 5 HOH A 20 163 43 HOH HOH . G 5 HOH A 21 164 44 HOH HOH . G 5 HOH A 22 165 45 HOH HOH . G 5 HOH A 23 166 46 HOH HOH . G 5 HOH A 24 167 47 HOH HOH . G 5 HOH A 25 168 52 HOH HOH . G 5 HOH A 26 169 56 HOH HOH . G 5 HOH A 27 170 63 HOH HOH . G 5 HOH A 28 171 66 HOH HOH . G 5 HOH A 29 172 68 HOH HOH . G 5 HOH A 30 173 69 HOH HOH . G 5 HOH A 31 174 71 HOH HOH . G 5 HOH A 32 175 72 HOH HOH . H 5 HOH B 1 149 6 HOH HOH . H 5 HOH B 2 150 8 HOH HOH . H 5 HOH B 3 151 9 HOH HOH . H 5 HOH B 4 152 13 HOH HOH . H 5 HOH B 5 153 14 HOH HOH . H 5 HOH B 6 154 15 HOH HOH . H 5 HOH B 7 155 16 HOH HOH . H 5 HOH B 8 156 18 HOH HOH . H 5 HOH B 9 157 20 HOH HOH . H 5 HOH B 10 158 21 HOH HOH . H 5 HOH B 11 159 22 HOH HOH . H 5 HOH B 12 160 23 HOH HOH . H 5 HOH B 13 161 24 HOH HOH . H 5 HOH B 14 162 25 HOH HOH . H 5 HOH B 15 163 26 HOH HOH . H 5 HOH B 16 164 29 HOH HOH . H 5 HOH B 17 165 30 HOH HOH . H 5 HOH B 18 166 31 HOH HOH . H 5 HOH B 19 167 35 HOH HOH . H 5 HOH B 20 168 37 HOH HOH . H 5 HOH B 21 169 39 HOH HOH . H 5 HOH B 22 170 40 HOH HOH . H 5 HOH B 23 171 42 HOH HOH . H 5 HOH B 24 172 48 HOH HOH . H 5 HOH B 25 173 49 HOH HOH . H 5 HOH B 26 174 50 HOH HOH . H 5 HOH B 27 175 51 HOH HOH . H 5 HOH B 28 176 53 HOH HOH . H 5 HOH B 29 177 54 HOH HOH . H 5 HOH B 30 178 55 HOH HOH . H 5 HOH B 31 179 57 HOH HOH . H 5 HOH B 32 180 58 HOH HOH . H 5 HOH B 33 181 59 HOH HOH . H 5 HOH B 34 182 60 HOH HOH . H 5 HOH B 35 183 61 HOH HOH . H 5 HOH B 36 184 62 HOH HOH . H 5 HOH B 37 185 64 HOH HOH . H 5 HOH B 38 186 65 HOH HOH . H 5 HOH B 39 187 67 HOH HOH . H 5 HOH B 40 188 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 39.65 -9.928 5.487 1 17.23 ? CHA HEM 142 A 1 HETATM 2 C CHB HEM . . . C 3 37.143 -11.465 9.358 1 14.8 ? CHB HEM 142 A 1 HETATM 3 C CHC HEM . . . C 3 38.864 -7.719 11.893 1 13.2 ? CHC HEM 142 A 1 HETATM 4 C CHD HEM . . . C 3 40.801 -5.875 7.872 1 13.08 ? CHD HEM 142 A 1 HETATM 5 C C1A HEM . . . C 3 38.81 -10.654 6.312 1 19.61 ? C1A HEM 142 A 1 HETATM 6 C C2A HEM . . . C 3 38.102 -11.86 5.953 1 22.26 ? C2A HEM 142 A 1 HETATM 7 C C3A HEM . . . C 3 37.423 -12.273 7.02 1 19.25 ? C3A HEM 142 A 1 HETATM 8 C C4A HEM . . . C 3 37.685 -11.342 8.094 1 17.08 ? C4A HEM 142 A 1 HETATM 9 C CMA HEM . . . C 3 36.5 -13.496 7.213 1 19.82 ? CMA HEM 142 A 1 HETATM 10 C CAA HEM . . . C 3 38.155 -12.485 4.552 1 31.2 ? CAA HEM 142 A 1 HETATM 11 C CBA HEM . . . C 3 39.477 -12.868 3.922 1 43.53 ? CBA HEM 142 A 1 HETATM 12 C CGA HEM . . . C 3 39.31 -13.415 2.506 1 48.81 ? CGA HEM 142 A 1 HETATM 13 O O1A HEM . . . C 3 39.008 -14.629 2.436 1 48.49 ? O1A HEM 142 A 1 HETATM 14 O O2A HEM . . . C 3 39.455 -12.561 1.594 1 54.11 ? O2A HEM 142 A 1 HETATM 15 C C1B HEM . . . C 3 37.449 -10.602 10.385 1 16.01 ? C1B HEM 142 A 1 HETATM 16 C C2B HEM . . . C 3 37.014 -10.774 11.768 1 13.77 ? C2B HEM 142 A 1 HETATM 17 C C3B HEM . . . C 3 37.5 -9.766 12.474 1 10.52 ? C3B HEM 142 A 1 HETATM 18 C C4B HEM . . . C 3 38.229 -8.903 11.561 1 13.91 ? C4B HEM 142 A 1 HETATM 19 C CMB HEM . . . C 3 36.174 -12.002 12.195 1 13.89 ? CMB HEM 142 A 1 HETATM 20 C CAB HEM . . . C 3 37.358 -9.441 13.968 1 13.69 ? CAB HEM 142 A 1 HETATM 21 C CBB HEM . . . C 3 36.189 -9.59 14.586 1 19.99 ? CBB HEM 142 A 1 HETATM 22 C C1C HEM . . . C 3 39.482 -6.846 11.017 1 11.84 ? C1C HEM 142 A 1 HETATM 23 C C2C HEM . . . C 3 39.929 -5.516 11.332 1 12.09 ? C2C HEM 142 A 1 HETATM 24 C C3C HEM . . . C 3 40.46 -5.002 10.215 1 12.51 ? C3C HEM 142 A 1 HETATM 25 C C4C HEM . . . C 3 40.343 -5.991 9.169 1 11.57 ? C4C HEM 142 A 1 HETATM 26 C CMC HEM . . . C 3 39.799 -4.868 12.732 1 10.97 ? CMC HEM 142 A 1 HETATM 27 C CAC HEM . . . C 3 41.1 -3.616 10.003 1 12.59 ? CAC HEM 142 A 1 HETATM 28 C CBC HEM . . . C 3 40.577 -2.516 10.531 1 13.88 ? CBC HEM 142 A 1 HETATM 29 C C1D HEM . . . C 3 40.691 -6.813 6.867 1 16.86 ? C1D HEM 142 A 1 HETATM 30 C C2D HEM . . . C 3 41.153 -6.672 5.495 1 19.75 ? C2D HEM 142 A 1 HETATM 31 C C3D HEM . . . C 3 40.85 -7.799 4.854 1 20.19 ? C3D HEM 142 A 1 HETATM 32 C C4D HEM . . . C 3 40.166 -8.676 5.78 1 19.59 ? C4D HEM 142 A 1 HETATM 33 C CMD HEM . . . C 3 41.885 -5.432 4.94 1 15.27 ? CMD HEM 142 A 1 HETATM 34 C CAD HEM . . . C 3 41.091 -8.144 3.359 1 21.75 ? CAD HEM 142 A 1 HETATM 35 C CBD HEM . . . C 3 39.93 -7.683 2.458 1 28.47 ? CBD HEM 142 A 1 HETATM 36 C CGD HEM . . . C 3 40.097 -7.868 0.979 1 33.5 ? CGD HEM 142 A 1 HETATM 37 O O1D HEM . . . C 3 39.07 -8.125 0.293 1 37.86 ? O1D HEM 142 A 1 HETATM 38 O O2D HEM . . . C 3 41.256 -7.715 0.528 1 34.89 ? O2D HEM 142 A 1 HETATM 39 N NA HEM . . . C 3 38.523 -10.351 7.633 1 15.85 ? NA HEM 142 A 1 HETATM 40 N NB HEM . . . C 3 38.189 -9.431 10.282 1 14.42 ? NB HEM 142 A 1 HETATM 41 N NC HEM . . . C 3 39.74 -7.12 9.681 1 12.91 ? NC HEM 142 A 1 HETATM 42 N ND HEM . . . C 3 40.072 -8.044 7.014 1 17.7 ? ND HEM 142 A 1 HETATM 43 FE FE HEM . . . C 3 39.111 -8.719 8.644 1 15.24 ? FE HEM 142 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #