data_1G0B # _model_server_result.job_id Fpo_ijzm5fvBW1tFPBXQhA _model_server_result.datetime_utc '2024-11-16 10:26:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g0b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":147}' # _entry.id 1G0B # _exptl.entry_id 1G0B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.7 _cell.angle_gamma 90 _cell.entry_id 1G0B _cell.length_a 108.8 _cell.length_b 63.2 _cell.length_c 54.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G0B _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 89.500274 0 51.075244 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc2 C FE HEM . A HEM 142 1_555 D C CMO . A CMO 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.753 ? metalc ? metalc3 C FE HEM . A HEM 142 1_555 D O CMO . A CMO 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 E FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc5 E FE HEM . B HEM 147 1_555 F C CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? metalc ? metalc6 E FE HEM . B HEM 147 1_555 F O CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 130 n n CHA C4D HEM doub 131 n n CHA HHA HEM sing 132 n n CHB C4A HEM sing 133 n n CHB C1B HEM doub 134 n n CHB HHB HEM sing 135 n n CHC C4B HEM sing 136 n n CHC C1C HEM doub 137 n n CHC HHC HEM sing 138 n n CHD C4C HEM doub 139 n n CHD C1D HEM sing 140 n n CHD HHD HEM sing 141 n n C1A C2A HEM doub 142 n y C1A NA HEM sing 143 n y C2A C3A HEM sing 144 n y C2A CAA HEM sing 145 n n C3A C4A HEM doub 146 n y C3A CMA HEM sing 147 n n C4A NA HEM sing 148 n y CMA HMA HEM sing 149 n n CMA HMAA HEM sing 150 n n CMA HMAB HEM sing 151 n n CAA CBA HEM sing 152 n n CAA HAA HEM sing 153 n n CAA HAAA HEM sing 154 n n CBA CGA HEM sing 155 n n CBA HBA HEM sing 156 n n CBA HBAA HEM sing 157 n n CGA O1A HEM doub 158 n n CGA O2A HEM sing 159 n n C1B C2B HEM sing 160 n n C1B NB HEM sing 161 n n C2B C3B HEM doub 162 n n C2B CMB HEM sing 163 n n C3B C4B HEM sing 164 n n C3B CAB HEM sing 165 n n C4B NB HEM doub 166 n n CMB HMB HEM sing 167 n n CMB HMBA HEM sing 168 n n CMB HMBB HEM sing 169 n n CAB CBB HEM doub 170 n n CAB HAB HEM sing 171 n n CBB HBB HEM sing 172 n n CBB HBBA HEM sing 173 n n C1C C2C HEM sing 174 n y C1C NC HEM sing 175 n y C2C C3C HEM doub 176 n y C2C CMC HEM sing 177 n n C3C C4C HEM sing 178 n y C3C CAC HEM sing 179 n n C4C NC HEM sing 180 n y CMC HMC HEM sing 181 n n CMC HMCA HEM sing 182 n n CMC HMCB HEM sing 183 n n CAC CBC HEM doub 184 n n CAC HAC HEM sing 185 n n CBC HBC HEM sing 186 n n CBC HBCA HEM sing 187 n n C1D C2D HEM sing 188 n n C1D ND HEM doub 189 n n C2D C3D HEM doub 190 n n C2D CMD HEM sing 191 n n C3D C4D HEM sing 192 n n C3D CAD HEM sing 193 n n C4D ND HEM sing 194 n n CMD HMD HEM sing 195 n n CMD HMDA HEM sing 196 n n CMD HMDB HEM sing 197 n n CAD CBD HEM sing 198 n n CAD HAD HEM sing 199 n n CAD HADA HEM sing 200 n n CBD CGD HEM sing 201 n n CBD HBD HEM sing 202 n n CBD HBDA HEM sing 203 n n CGD O1D HEM doub 204 n n CGD O2D HEM sing 205 n n O2A H2A HEM sing 206 n n O2D H2D HEM sing 207 n n FE NA HEM sing 208 n n FE NB HEM sing 209 n n FE NC HEM sing 210 n n FE ND HEM sing 211 n n # _atom_sites.entry_id 1G0B _atom_sites.fract_transf_matrix[1][1] 0.009191 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003473 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019579 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 142 142 HEM HEM . D 4 CMO A 1 143 143 CMO CMO . E 3 HEM B 1 147 147 HEM HEM . F 4 CMO B 1 148 148 CMO CMO . G 5 HOH A 1 144 1 HOH HOH . G 5 HOH A 2 145 2 HOH HOH . G 5 HOH A 3 146 3 HOH HOH . G 5 HOH A 4 147 4 HOH HOH . G 5 HOH A 5 148 5 HOH HOH . G 5 HOH A 6 149 7 HOH HOH . G 5 HOH A 7 150 10 HOH HOH . G 5 HOH A 8 151 11 HOH HOH . G 5 HOH A 9 152 12 HOH HOH . G 5 HOH A 10 153 17 HOH HOH . G 5 HOH A 11 154 19 HOH HOH . G 5 HOH A 12 155 27 HOH HOH . G 5 HOH A 13 156 28 HOH HOH . G 5 HOH A 14 157 32 HOH HOH . G 5 HOH A 15 158 33 HOH HOH . G 5 HOH A 16 159 34 HOH HOH . G 5 HOH A 17 160 36 HOH HOH . G 5 HOH A 18 161 38 HOH HOH . G 5 HOH A 19 162 41 HOH HOH . G 5 HOH A 20 163 43 HOH HOH . G 5 HOH A 21 164 44 HOH HOH . G 5 HOH A 22 165 45 HOH HOH . G 5 HOH A 23 166 46 HOH HOH . G 5 HOH A 24 167 47 HOH HOH . G 5 HOH A 25 168 52 HOH HOH . G 5 HOH A 26 169 56 HOH HOH . G 5 HOH A 27 170 63 HOH HOH . G 5 HOH A 28 171 66 HOH HOH . G 5 HOH A 29 172 68 HOH HOH . G 5 HOH A 30 173 69 HOH HOH . G 5 HOH A 31 174 71 HOH HOH . G 5 HOH A 32 175 72 HOH HOH . H 5 HOH B 1 149 6 HOH HOH . H 5 HOH B 2 150 8 HOH HOH . H 5 HOH B 3 151 9 HOH HOH . H 5 HOH B 4 152 13 HOH HOH . H 5 HOH B 5 153 14 HOH HOH . H 5 HOH B 6 154 15 HOH HOH . H 5 HOH B 7 155 16 HOH HOH . H 5 HOH B 8 156 18 HOH HOH . H 5 HOH B 9 157 20 HOH HOH . H 5 HOH B 10 158 21 HOH HOH . H 5 HOH B 11 159 22 HOH HOH . H 5 HOH B 12 160 23 HOH HOH . H 5 HOH B 13 161 24 HOH HOH . H 5 HOH B 14 162 25 HOH HOH . H 5 HOH B 15 163 26 HOH HOH . H 5 HOH B 16 164 29 HOH HOH . H 5 HOH B 17 165 30 HOH HOH . H 5 HOH B 18 166 31 HOH HOH . H 5 HOH B 19 167 35 HOH HOH . H 5 HOH B 20 168 37 HOH HOH . H 5 HOH B 21 169 39 HOH HOH . H 5 HOH B 22 170 40 HOH HOH . H 5 HOH B 23 171 42 HOH HOH . H 5 HOH B 24 172 48 HOH HOH . H 5 HOH B 25 173 49 HOH HOH . H 5 HOH B 26 174 50 HOH HOH . H 5 HOH B 27 175 51 HOH HOH . H 5 HOH B 28 176 53 HOH HOH . H 5 HOH B 29 177 54 HOH HOH . H 5 HOH B 30 178 55 HOH HOH . H 5 HOH B 31 179 57 HOH HOH . H 5 HOH B 32 180 58 HOH HOH . H 5 HOH B 33 181 59 HOH HOH . H 5 HOH B 34 182 60 HOH HOH . H 5 HOH B 35 183 61 HOH HOH . H 5 HOH B 36 184 62 HOH HOH . H 5 HOH B 37 185 64 HOH HOH . H 5 HOH B 38 186 65 HOH HOH . H 5 HOH B 39 187 67 HOH HOH . H 5 HOH B 40 188 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 3 31.637 10.652 40.736 1 15.15 ? CHA HEM 147 B 1 HETATM 2 C CHB HEM . . . E 3 30.848 11.803 36.107 1 16.13 ? CHB HEM 147 B 1 HETATM 3 C CHC HEM . . . E 3 33.729 8.162 34.715 1 12.14 ? CHC HEM 147 B 1 HETATM 4 C CHD HEM . . . E 3 34.016 6.683 39.312 1 16.88 ? CHD HEM 147 B 1 HETATM 5 C C1A HEM . . . E 3 31.136 11.272 39.61 1 16.3 ? C1A HEM 147 B 1 HETATM 6 C C2A HEM . . . E 3 30.14 12.326 39.573 1 21.27 ? C2A HEM 147 B 1 HETATM 7 C C3A HEM . . . E 3 29.925 12.656 38.301 1 18.01 ? C3A HEM 147 B 1 HETATM 8 C C4A HEM . . . E 3 30.754 11.791 37.487 1 13.95 ? C4A HEM 147 B 1 HETATM 9 C CMA HEM . . . E 3 28.988 13.742 37.745 1 15.9 ? CMA HEM 147 B 1 HETATM 10 C CAA HEM . . . E 3 29.522 12.984 40.842 1 27.49 ? CAA HEM 147 B 1 HETATM 11 C CBA HEM . . . E 3 30.498 13.913 41.568 1 39.63 ? CBA HEM 147 B 1 HETATM 12 C CGA HEM . . . E 3 29.991 14.898 42.573 1 47.1 ? CGA HEM 147 B 1 HETATM 13 O O1A HEM . . . E 3 29.249 15.831 42.156 1 51.4 ? O1A HEM 147 B 1 HETATM 14 O O2A HEM . . . E 3 30.367 14.747 43.771 1 51.9 ? O2A HEM 147 B 1 HETATM 15 C C1B HEM . . . E 3 31.62 10.961 35.317 1 17.26 ? C1B HEM 147 B 1 HETATM 16 C C2B HEM . . . E 3 31.788 11.036 33.878 1 14.83 ? C2B HEM 147 B 1 HETATM 17 C C3B HEM . . . E 3 32.573 10.021 33.509 1 13.79 ? C3B HEM 147 B 1 HETATM 18 C C4B HEM . . . E 3 32.934 9.287 34.702 1 14.8 ? C4B HEM 147 B 1 HETATM 19 C CMB HEM . . . E 3 31.129 12.136 33.015 1 16.35 ? CMB HEM 147 B 1 HETATM 20 C CAB HEM . . . E 3 33.12 9.601 32.133 1 15.42 ? CAB HEM 147 B 1 HETATM 21 C CBB HEM . . . E 3 32.487 9.871 31.014 1 20.45 ? CBB HEM 147 B 1 HETATM 22 C C1C HEM . . . E 3 33.975 7.404 35.837 1 13.17 ? C1C HEM 147 B 1 HETATM 23 C C2C HEM . . . E 3 34.584 6.082 35.834 1 14.61 ? C2C HEM 147 B 1 HETATM 24 C C3C HEM . . . E 3 34.679 5.679 37.101 1 14.16 ? C3C HEM 147 B 1 HETATM 25 C C4C HEM . . . E 3 34.119 6.733 37.935 1 13.62 ? C4C HEM 147 B 1 HETATM 26 C CMC HEM . . . E 3 35.004 5.383 34.52 1 7.92 ? CMC HEM 147 B 1 HETATM 27 C CAC HEM . . . E 3 35.24 4.382 37.723 1 17.96 ? CAC HEM 147 B 1 HETATM 28 C CBC HEM . . . E 3 35.68 3.379 36.957 1 21.66 ? CBC HEM 147 B 1 HETATM 29 C C1D HEM . . . E 3 33.381 7.621 40.09 1 17.92 ? C1D HEM 147 B 1 HETATM 30 C C2D HEM . . . E 3 33.241 7.553 41.527 1 19.82 ? C2D HEM 147 B 1 HETATM 31 C C3D HEM . . . E 3 32.607 8.658 41.917 1 18.68 ? C3D HEM 147 B 1 HETATM 32 C C4D HEM . . . E 3 32.291 9.44 40.759 1 16.97 ? C4D HEM 147 B 1 HETATM 33 C CMD HEM . . . E 3 33.802 6.377 42.379 1 19.47 ? CMD HEM 147 B 1 HETATM 34 C CAD HEM . . . E 3 32.22 9.048 43.369 1 21.72 ? CAD HEM 147 B 1 HETATM 35 C CBD HEM . . . E 3 31.01 8.226 43.874 1 32.6 ? CBD HEM 147 B 1 HETATM 36 C CGD HEM . . . E 3 30.505 8.759 45.198 1 42.39 ? CGD HEM 147 B 1 HETATM 37 O O1D HEM . . . E 3 31.148 8.362 46.196 1 47.76 ? O1D HEM 147 B 1 HETATM 38 O O2D HEM . . . E 3 29.544 9.565 45.153 1 49.1 ? O2D HEM 147 B 1 HETATM 39 N NA HEM . . . E 3 31.483 10.949 38.314 1 15.69 ? NA HEM 147 B 1 HETATM 40 N NB HEM . . . E 3 32.329 9.872 35.817 1 13.7 ? NB HEM 147 B 1 HETATM 41 N NC HEM . . . E 3 33.696 7.772 37.143 1 14.32 ? NC HEM 147 B 1 HETATM 42 N ND HEM . . . E 3 32.777 8.787 39.628 1 17.63 ? ND HEM 147 B 1 HETATM 43 FE FE HEM . . . E 3 32.568 9.347 37.725 1 15.99 ? FE HEM 147 B 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #