data_1G17 # _model_server_result.job_id c7kzQzFy90d0-J04com97g _model_server_result.datetime_utc '2024-11-19 07:22:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g17 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 1G17 # _exptl.entry_id 1G17 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1G17 _cell.length_a 84.504 _cell.length_b 84.504 _cell.length_c 86.469 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G17 _symmetry.cell_setting hexagonal _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 34 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc2 A OG1 THR 35 A THR 52 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc3 D O2G GNP . A GNP 201 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc4 D O2B GNP . A GNP 201 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc5 C MG MG . A MG 301 1_555 G O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc6 C MG MG . A MG 301 1_555 G O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc7 B OG SER 17 B SER 34 1_555 E MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc8 B OG1 THR 35 B THR 52 1_555 E MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc9 F O2B GNP . B GNP 202 1_555 E MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc10 F O2G GNP . B GNP 202 1_555 E MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc11 E MG MG . B MG 302 1_555 H O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc12 E MG MG . B MG 302 1_555 H O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 1G17 _atom_sites.fract_transf_matrix[1][1] 0.011834 _atom_sites.fract_transf_matrix[1][2] 0.006832 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013664 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011565 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 301 301 MG MG . D 3 GNP A 1 201 201 GNP GTN . E 2 MG B 1 302 302 MG MG . F 3 GNP B 1 202 202 GNP GTN . G 4 HOH A 1 403 403 HOH HOH . G 4 HOH A 2 404 404 HOH HOH . G 4 HOH A 3 408 408 HOH HOH . G 4 HOH A 4 409 409 HOH HOH . G 4 HOH A 5 410 410 HOH HOH . G 4 HOH A 6 411 411 HOH HOH . G 4 HOH A 7 413 413 HOH HOH . G 4 HOH A 8 417 417 HOH HOH . G 4 HOH A 9 418 418 HOH HOH . G 4 HOH A 10 419 419 HOH HOH . G 4 HOH A 11 422 422 HOH HOH . G 4 HOH A 12 423 423 HOH HOH . G 4 HOH A 13 429 429 HOH HOH . G 4 HOH A 14 430 430 HOH HOH . G 4 HOH A 15 432 432 HOH HOH . G 4 HOH A 16 435 435 HOH HOH . G 4 HOH A 17 437 437 HOH HOH . G 4 HOH A 18 438 438 HOH HOH . G 4 HOH A 19 440 440 HOH HOH . G 4 HOH A 20 441 441 HOH HOH . G 4 HOH A 21 444 444 HOH HOH . G 4 HOH A 22 446 446 HOH HOH . G 4 HOH A 23 447 447 HOH HOH . G 4 HOH A 24 448 448 HOH HOH . G 4 HOH A 25 454 454 HOH HOH . G 4 HOH A 26 456 456 HOH HOH . G 4 HOH A 27 458 458 HOH HOH . G 4 HOH A 28 467 467 HOH HOH . G 4 HOH A 29 469 469 HOH HOH . G 4 HOH A 30 472 472 HOH HOH . G 4 HOH A 31 478 478 HOH HOH . G 4 HOH A 32 480 480 HOH HOH . G 4 HOH A 33 484 484 HOH HOH . G 4 HOH A 34 486 486 HOH HOH . G 4 HOH A 35 488 488 HOH HOH . G 4 HOH A 36 489 489 HOH HOH . G 4 HOH A 37 490 490 HOH HOH . G 4 HOH A 38 491 491 HOH HOH . G 4 HOH A 39 492 492 HOH HOH . G 4 HOH A 40 493 493 HOH HOH . G 4 HOH A 41 495 495 HOH HOH . G 4 HOH A 42 496 496 HOH HOH . G 4 HOH A 43 498 498 HOH HOH . G 4 HOH A 44 499 499 HOH HOH . G 4 HOH A 45 501 501 HOH HOH . G 4 HOH A 46 503 503 HOH HOH . G 4 HOH A 47 508 508 HOH HOH . G 4 HOH A 48 511 511 HOH HOH . G 4 HOH A 49 513 513 HOH HOH . G 4 HOH A 50 518 518 HOH HOH . G 4 HOH A 51 522 522 HOH HOH . G 4 HOH A 52 527 527 HOH HOH . G 4 HOH A 53 530 530 HOH HOH . G 4 HOH A 54 534 534 HOH HOH . G 4 HOH A 55 537 537 HOH HOH . G 4 HOH A 56 538 538 HOH HOH . H 4 HOH B 1 401 401 HOH HOH . H 4 HOH B 2 402 402 HOH HOH . H 4 HOH B 3 406 406 HOH HOH . H 4 HOH B 4 407 407 HOH HOH . H 4 HOH B 5 412 412 HOH HOH . H 4 HOH B 6 414 414 HOH HOH . H 4 HOH B 7 416 416 HOH HOH . H 4 HOH B 8 421 421 HOH HOH . H 4 HOH B 9 424 424 HOH HOH . H 4 HOH B 10 425 425 HOH HOH . H 4 HOH B 11 426 426 HOH HOH . H 4 HOH B 12 427 427 HOH HOH . H 4 HOH B 13 428 428 HOH HOH . H 4 HOH B 14 431 431 HOH HOH . H 4 HOH B 15 433 433 HOH HOH . H 4 HOH B 16 434 434 HOH HOH . H 4 HOH B 17 436 436 HOH HOH . H 4 HOH B 18 439 439 HOH HOH . H 4 HOH B 19 442 442 HOH HOH . H 4 HOH B 20 443 443 HOH HOH . H 4 HOH B 21 445 445 HOH HOH . H 4 HOH B 22 449 449 HOH HOH . H 4 HOH B 23 450 450 HOH HOH . H 4 HOH B 24 451 451 HOH HOH . H 4 HOH B 25 452 452 HOH HOH . H 4 HOH B 26 453 453 HOH HOH . H 4 HOH B 27 455 455 HOH HOH . H 4 HOH B 28 457 457 HOH HOH . H 4 HOH B 29 459 459 HOH HOH . H 4 HOH B 30 460 460 HOH HOH . H 4 HOH B 31 462 462 HOH HOH . H 4 HOH B 32 463 463 HOH HOH . H 4 HOH B 33 466 466 HOH HOH . H 4 HOH B 34 468 468 HOH HOH . H 4 HOH B 35 470 470 HOH HOH . H 4 HOH B 36 471 471 HOH HOH . H 4 HOH B 37 473 473 HOH HOH . H 4 HOH B 38 476 476 HOH HOH . H 4 HOH B 39 479 479 HOH HOH . H 4 HOH B 40 481 481 HOH HOH . H 4 HOH B 41 483 483 HOH HOH . H 4 HOH B 42 485 485 HOH HOH . H 4 HOH B 43 494 494 HOH HOH . H 4 HOH B 44 500 500 HOH HOH . H 4 HOH B 45 504 504 HOH HOH . H 4 HOH B 46 505 505 HOH HOH . H 4 HOH B 47 506 506 HOH HOH . H 4 HOH B 48 507 507 HOH HOH . H 4 HOH B 49 510 510 HOH HOH . H 4 HOH B 50 515 515 HOH HOH . H 4 HOH B 51 516 516 HOH HOH . H 4 HOH B 52 519 519 HOH HOH . H 4 HOH B 53 520 520 HOH HOH . H 4 HOH B 54 523 523 HOH HOH . H 4 HOH B 55 526 526 HOH HOH . H 4 HOH B 56 528 528 HOH HOH . H 4 HOH B 57 529 529 HOH HOH . H 4 HOH B 58 532 532 HOH HOH . H 4 HOH B 59 533 533 HOH HOH . H 4 HOH B 60 535 535 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . D 3 15.761 24.952 -14.635 1 22.89 ? PG GNP 201 A 1 HETATM 2 O O1G GNP . . . D 3 15.468 25.415 -15.985 1 21.53 ? O1G GNP 201 A 1 HETATM 3 O O2G GNP . . . D 3 15.624 26.035 -13.684 1 23.19 ? O2G GNP 201 A 1 HETATM 4 O O3G GNP . . . D 3 17.311 24.599 -14.582 1 23.21 ? O3G GNP 201 A 1 HETATM 5 N N3B GNP . . . D 3 14.863 23.672 -14.234 1 23.87 ? N3B GNP 201 A 1 HETATM 6 P PB GNP . . . D 3 14.903 22.891 -12.793 1 25.42 ? PB GNP 201 A 1 HETATM 7 O O1B GNP . . . D 3 15.987 21.875 -12.698 1 23.83 ? O1B GNP 201 A 1 HETATM 8 O O2B GNP . . . D 3 14.928 23.816 -11.631 1 25.45 ? O2B GNP 201 A 1 HETATM 9 O O3A GNP . . . D 3 13.508 22.115 -12.756 1 20.79 ? O3A GNP 201 A 1 HETATM 10 P PA GNP . . . D 3 12.151 22.537 -11.908 1 19.14 ? PA GNP 201 A 1 HETATM 11 O O1A GNP . . . D 3 12.332 22.378 -10.433 1 21.22 ? O1A GNP 201 A 1 HETATM 12 O O2A GNP . . . D 3 11.678 23.854 -12.442 1 19.12 ? O2A GNP 201 A 1 HETATM 13 O O5' GNP . . . D 3 11.239 21.383 -12.421 1 17.54 ? O5' GNP 201 A 1 HETATM 14 C C5' GNP . . . D 3 10.807 21.367 -13.783 1 20.01 ? C5' GNP 201 A 1 HETATM 15 C C4' GNP . . . D 3 9.62 20.443 -13.955 1 20.53 ? C4' GNP 201 A 1 HETATM 16 O O4' GNP . . . D 3 9.862 19.163 -13.315 1 20.56 ? O4' GNP 201 A 1 HETATM 17 C C3' GNP . . . D 3 8.314 21.024 -13.329 1 20.15 ? C3' GNP 201 A 1 HETATM 18 O O3' GNP . . . D 3 7.164 20.766 -14.193 1 20.68 ? O3' GNP 201 A 1 HETATM 19 C C2' GNP . . . D 3 8.249 20.252 -12.004 1 20.44 ? C2' GNP 201 A 1 HETATM 20 O O2' GNP . . . D 3 6.92 20.124 -11.463 1 23.28 ? O2' GNP 201 A 1 HETATM 21 C C1' GNP . . . D 3 8.817 18.887 -12.375 1 19.46 ? C1' GNP 201 A 1 HETATM 22 N N9 GNP . . . D 3 9.399 18.13 -11.229 1 20.94 ? N9 GNP 201 A 1 HETATM 23 C C8 GNP . . . D 3 10.418 18.5 -10.387 1 18.69 ? C8 GNP 201 A 1 HETATM 24 N N7 GNP . . . D 3 10.709 17.634 -9.49 1 21.95 ? N7 GNP 201 A 1 HETATM 25 C C5 GNP . . . D 3 9.841 16.594 -9.717 1 21.57 ? C5 GNP 201 A 1 HETATM 26 C C6 GNP . . . D 3 9.691 15.348 -9.032 1 22.2 ? C6 GNP 201 A 1 HETATM 27 O O6 GNP . . . D 3 10.324 14.945 -8.075 1 24.97 ? O6 GNP 201 A 1 HETATM 28 N N1 GNP . . . D 3 8.672 14.548 -9.584 1 21.72 ? N1 GNP 201 A 1 HETATM 29 C C2 GNP . . . D 3 7.88 14.897 -10.672 1 22.69 ? C2 GNP 201 A 1 HETATM 30 N N2 GNP . . . D 3 6.957 14.007 -11.064 1 20.76 ? N2 GNP 201 A 1 HETATM 31 N N3 GNP . . . D 3 8.031 16.086 -11.313 1 20.45 ? N3 GNP 201 A 1 HETATM 32 C C4 GNP . . . D 3 9.021 16.875 -10.785 1 20.72 ? C4 GNP 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #