data_1G23 # _model_server_result.job_id D-HYMWSktGomI7iyHSiSdw _model_server_result.datetime_utc '2024-11-24 06:27:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g23 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":505}' # _entry.id 1G23 # _exptl.entry_id 1G23 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 1-O-phosphono-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.81 _cell.angle_beta 80.31 _cell.angle_gamma 80.18 _cell.entry_id 1G23 _cell.length_a 71.583 _cell.length_b 73.901 _cell.length_c 133.748 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G23 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P,Q 1 1 E,F,G,H,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 R N N ? 2 U N N ? 2 Y N N ? 2 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 34 A PRO 34 1_555 A N MSE 35 A MSE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale2 A C MSE 35 A MSE 35 1_555 A N ILE 36 A ILE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? covale ? covale3 A C LEU 43 A LEU 43 1_555 A N MSE 44 A MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale4 A C MSE 44 A MSE 44 1_555 A N LEU 45 A LEU 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale5 A C ILE 216 A ILE 216 1_555 A N MSE 217 A MSE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 217 A MSE 217 1_555 A N GLY 218 A GLY 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale7 B C PRO 34 B PRO 34 1_555 B N MSE 35 B MSE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 B C MSE 35 B MSE 35 1_555 B N ILE 36 B ILE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale9 B C LEU 43 B LEU 43 1_555 B N MSE 44 B MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 B C MSE 44 B MSE 44 1_555 B N LEU 45 B LEU 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale11 B C ILE 216 B ILE 216 1_555 B N MSE 217 B MSE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 B C MSE 217 B MSE 217 1_555 B N GLY 218 B GLY 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale13 C C PRO 34 C PRO 34 1_555 C N MSE 35 C MSE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale14 C C MSE 35 C MSE 35 1_555 C N ILE 36 C ILE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale15 C C LEU 43 C LEU 43 1_555 C N MSE 44 C MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale16 C C MSE 44 C MSE 44 1_555 C N LEU 45 C LEU 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale17 C C ILE 216 C ILE 216 1_555 C N MSE 217 C MSE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale18 C C MSE 217 C MSE 217 1_555 C N GLY 218 C GLY 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale19 D C PRO 34 D PRO 34 1_555 D N MSE 35 D MSE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale20 D C MSE 35 D MSE 35 1_555 D N ILE 36 D ILE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale21 D C LEU 43 D LEU 43 1_555 D N MSE 44 D MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale22 D C MSE 44 D MSE 44 1_555 D N LEU 45 D LEU 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale23 D C ILE 216 D ILE 216 1_555 D N MSE 217 D MSE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale24 D C MSE 217 D MSE 217 1_555 D N GLY 218 D GLY 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale25 E C PRO 34 E PRO 34 1_555 E N MSE 35 E MSE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale26 E C MSE 35 E MSE 35 1_555 E N ILE 36 E ILE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale27 E C LEU 43 E LEU 43 1_555 E N MSE 44 E MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale28 E C MSE 44 E MSE 44 1_555 E N LEU 45 E LEU 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale29 E C ILE 216 E ILE 216 1_555 E N MSE 217 E MSE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale30 E C MSE 217 E MSE 217 1_555 E N GLY 218 E GLY 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale31 F C PRO 34 F PRO 34 1_555 F N MSE 35 F MSE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale32 F C MSE 35 F MSE 35 1_555 F N ILE 36 F ILE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale33 F C LEU 43 F LEU 43 1_555 F N MSE 44 F MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale34 F C MSE 44 F MSE 44 1_555 F N LEU 45 F LEU 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale35 F C ILE 216 F ILE 216 1_555 F N MSE 217 F MSE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale36 F C MSE 217 F MSE 217 1_555 F N GLY 218 F GLY 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale37 G C PRO 34 G PRO 34 1_555 G N MSE 35 G MSE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale38 G C MSE 35 G MSE 35 1_555 G N ILE 36 G ILE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale39 G C LEU 43 G LEU 43 1_555 G N MSE 44 G MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale40 G C MSE 44 G MSE 44 1_555 G N LEU 45 G LEU 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale41 G C ILE 216 G ILE 216 1_555 G N MSE 217 G MSE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale42 G C MSE 217 G MSE 217 1_555 G N GLY 218 G GLY 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale43 H C PRO 34 H PRO 34 1_555 H N MSE 35 H MSE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale44 H C MSE 35 H MSE 35 1_555 H N ILE 36 H ILE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale45 H C LEU 43 H LEU 43 1_555 H N MSE 44 H MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale46 H C MSE 44 H MSE 44 1_555 H N LEU 45 H LEU 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale47 H C ILE 216 H ILE 216 1_555 H N MSE 217 H MSE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale48 H C MSE 217 H MSE 217 1_555 H N GLY 218 H GLY 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id G1P _chem_comp.mon_nstd_flag n _chem_comp.name 1-O-phosphono-alpha-D-glucopyranose _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ALPHA-D-GLUCOSE-1-PHOSPHATE;1-O-phosphono-alpha-D-glucose;1-O-phosphono-D-glucose;1-O-phosphono-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 G1P sing 83 n n C1 O1 G1P sing 84 n n C1 O5 G1P sing 85 n n C1 H1 G1P sing 86 n n C2 C3 G1P sing 87 n n C2 O2 G1P sing 88 n n C2 H2 G1P sing 89 n n C3 C4 G1P sing 90 n n C3 O3 G1P sing 91 n n C3 H3 G1P sing 92 n n C4 C5 G1P sing 93 n n C4 O4 G1P sing 94 n n C4 H4 G1P sing 95 n n C5 C6 G1P sing 96 n n C5 O5 G1P sing 97 n n C5 H5 G1P sing 98 n n C6 O6 G1P sing 99 n n C6 H61 G1P sing 100 n n C6 H62 G1P sing 101 n n O1 P G1P sing 102 n n O2 HO2 G1P sing 103 n n O3 HO3 G1P sing 104 n n O4 HO4 G1P sing 105 n n O6 HO6 G1P sing 106 n n P O1P G1P doub 107 n n P O2P G1P sing 108 n n P O3P G1P sing 109 n n O2P HOP2 G1P sing 110 n n O3P HOP3 G1P sing 111 n n # _pdbx_chem_comp_identifier.comp_id G1P _pdbx_chem_comp_identifier.identifier a-D-Glcp1PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1G23 _atom_sites.fract_transf_matrix[1][1] 0.01397 _atom_sites.fract_transf_matrix[1][2] -0.002419 _atom_sites.fract_transf_matrix[1][3] -0.002449 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013733 _atom_sites.fract_transf_matrix[2][3] 0.000358 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007587 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 G1P A 1 500 500 G1P G1P . J 3 SO4 A 1 600 600 SO4 SO4 . K 2 G1P B 1 501 501 G1P G1P . L 3 SO4 B 1 601 601 SO4 SO4 . M 2 G1P C 1 502 502 G1P G1P . N 3 SO4 C 1 602 602 SO4 SO4 . O 2 G1P D 1 503 503 G1P G1P . P 3 SO4 D 1 603 603 SO4 SO4 . Q 3 SO4 D 1 608 608 SO4 SO4 . R 2 G1P E 1 504 504 G1P G1P . S 3 SO4 E 1 604 604 SO4 SO4 . T 3 SO4 E 1 609 609 SO4 SO4 . U 2 G1P F 1 505 505 G1P G1P . V 3 SO4 F 1 605 605 SO4 SO4 . W 3 SO4 F 1 610 610 SO4 SO4 . X 3 SO4 F 1 611 611 SO4 SO4 . Y 2 G1P G 1 506 506 G1P G1P . Z 3 SO4 G 1 606 606 SO4 SO4 . AA 3 SO4 G 1 612 612 SO4 SO4 . BA 2 G1P H 1 507 507 G1P G1P . CA 3 SO4 H 1 607 607 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G1P . . . U 2 36.088 7.095 -18.365 1 59.9 ? C1 G1P 505 F 1 HETATM 2 C C2 G1P . . . U 2 35.946 6.87 -19.864 1 59.44 ? C2 G1P 505 F 1 HETATM 3 C C3 G1P . . . U 2 37.229 6.448 -20.471 1 57.48 ? C3 G1P 505 F 1 HETATM 4 C C4 G1P . . . U 2 38.27 7.512 -20.131 1 57.1 ? C4 G1P 505 F 1 HETATM 5 C C5 G1P . . . U 2 38.505 7.559 -18.61 1 56.93 ? C5 G1P 505 F 1 HETATM 6 C C6 G1P . . . U 2 39.305 8.818 -18.216 1 56.39 ? C6 G1P 505 F 1 HETATM 7 O O1 G1P . . . U 2 36.334 5.79 -17.899 1 61.21 ? O1 G1P 505 F 1 HETATM 8 O O2 G1P . . . U 2 35.111 5.734 -20.214 1 60.35 ? O2 G1P 505 F 1 HETATM 9 O O3 G1P . . . U 2 36.819 6.392 -21.847 1 57.29 ? O3 G1P 505 F 1 HETATM 10 O O4 G1P . . . U 2 39.511 7.264 -20.849 1 56.27 ? O4 G1P 505 F 1 HETATM 11 O O5 G1P . . . U 2 37.333 7.444 -17.781 1 58.95 ? O5 G1P 505 F 1 HETATM 12 O O6 G1P . . . U 2 39.461 8.919 -16.776 1 53.49 ? O6 G1P 505 F 1 HETATM 13 P P G1P . . . U 2 35.806 5.394 -16.465 1 62.41 ? P G1P 505 F 1 HETATM 14 O O1P G1P . . . U 2 36.19 6.634 -15.475 1 61.43 ? O1P G1P 505 F 1 HETATM 15 O O2P G1P . . . U 2 34.107 5.25 -16.568 1 62.5 ? O2P G1P 505 F 1 HETATM 16 O O3P G1P . . . U 2 36.591 3.895 -16.194 1 61.28 ? O3P G1P 505 F 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #