data_1G28 # _model_server_result.job_id RYBGclt6QXHPwG4VVM2RmA _model_server_result.datetime_utc '2024-11-24 21:28:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g28 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2033}' # _entry.id 1G28 # _exptl.entry_id 1G28 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 93.32 _cell.angle_beta 94.01 _cell.angle_gamma 90.06 _cell.entry_id 1G28 _cell.length_a 44.89 _cell.length_b 54.078 _cell.length_c 70.619 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G28 _symmetry.cell_setting triclinic _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 1G28 _atom_sites.fract_transf_matrix[1][1] 0.022277 _atom_sites.fract_transf_matrix[1][2] 0.000023 _atom_sites.fract_transf_matrix[1][3] 0.001566 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018492 _atom_sites.fract_transf_matrix[2][3] 0.001077 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FMN A 1 1033 1033 FMN FMN . F 2 FMN B 1 2033 2033 FMN FMN . G 2 FMN C 1 3033 3033 FMN FMN . H 2 FMN D 1 4033 4033 FMN FMN . I 3 HOH A 1 4 4 HOH HOH . I 3 HOH A 2 6 6 HOH HOH . I 3 HOH A 3 9 9 HOH HOH . I 3 HOH A 4 13 13 HOH HOH . I 3 HOH A 5 21 21 HOH HOH . I 3 HOH A 6 24 24 HOH HOH . I 3 HOH A 7 27 27 HOH HOH . I 3 HOH A 8 29 29 HOH HOH . I 3 HOH A 9 32 32 HOH HOH . I 3 HOH A 10 34 34 HOH HOH . I 3 HOH A 11 35 35 HOH HOH . I 3 HOH A 12 37 37 HOH HOH . I 3 HOH A 13 38 38 HOH HOH . I 3 HOH A 14 41 41 HOH HOH . I 3 HOH A 15 46 46 HOH HOH . I 3 HOH A 16 50 50 HOH HOH . J 3 HOH B 1 2 2 HOH HOH . J 3 HOH B 2 5 5 HOH HOH . J 3 HOH B 3 14 14 HOH HOH . J 3 HOH B 4 18 18 HOH HOH . J 3 HOH B 5 19 19 HOH HOH . J 3 HOH B 6 23 23 HOH HOH . J 3 HOH B 7 30 30 HOH HOH . J 3 HOH B 8 40 40 HOH HOH . J 3 HOH B 9 44 44 HOH HOH . J 3 HOH B 10 51 51 HOH HOH . K 3 HOH C 1 1 1 HOH HOH . K 3 HOH C 2 8 8 HOH HOH . K 3 HOH C 3 10 10 HOH HOH . K 3 HOH C 4 11 11 HOH HOH . K 3 HOH C 5 15 15 HOH HOH . K 3 HOH C 6 22 22 HOH HOH . K 3 HOH C 7 25 25 HOH HOH . K 3 HOH C 8 26 26 HOH HOH . K 3 HOH C 9 28 28 HOH HOH . K 3 HOH C 10 33 33 HOH HOH . K 3 HOH C 11 39 39 HOH HOH . K 3 HOH C 12 42 42 HOH HOH . K 3 HOH C 13 43 43 HOH HOH . K 3 HOH C 14 45 45 HOH HOH . L 3 HOH D 1 3 3 HOH HOH . L 3 HOH D 2 7 7 HOH HOH . L 3 HOH D 3 12 12 HOH HOH . L 3 HOH D 4 16 16 HOH HOH . L 3 HOH D 5 17 17 HOH HOH . L 3 HOH D 6 20 20 HOH HOH . L 3 HOH D 7 31 31 HOH HOH . L 3 HOH D 8 36 36 HOH HOH . L 3 HOH D 9 47 47 HOH HOH . L 3 HOH D 10 48 48 HOH HOH . L 3 HOH D 11 49 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . F 2 28.132 9.319 19.871 1 35.52 ? N1 FMN 2033 B 1 HETATM 2 C C2 FMN . . . F 2 29.395 8.909 19.525 1 38.67 ? C2 FMN 2033 B 1 HETATM 3 O O2 FMN . . . F 2 29.677 8.431 18.46 1 40.59 ? O2 FMN 2033 B 1 HETATM 4 N N3 FMN . . . F 2 30.458 9.053 20.477 1 39.19 ? N3 FMN 2033 B 1 HETATM 5 C C4 FMN . . . F 2 30.327 9.572 21.724 1 38.85 ? C4 FMN 2033 B 1 HETATM 6 O O4 FMN . . . F 2 31.31 9.654 22.483 1 40.87 ? O4 FMN 2033 B 1 HETATM 7 C C4A FMN . . . F 2 28.981 10.014 22.097 1 36.76 ? C4A FMN 2033 B 1 HETATM 8 N N5 FMN . . . F 2 28.754 10.535 23.3 1 34.87 ? N5 FMN 2033 B 1 HETATM 9 C C5A FMN . . . F 2 27.489 10.931 23.631 1 33.96 ? C5A FMN 2033 B 1 HETATM 10 C C6 FMN . . . F 2 27.231 11.489 24.948 1 33.31 ? C6 FMN 2033 B 1 HETATM 11 C C7 FMN . . . F 2 26.001 11.894 25.363 1 35.05 ? C7 FMN 2033 B 1 HETATM 12 C C7M FMN . . . F 2 25.75 12.476 26.759 1 38.56 ? C7M FMN 2033 B 1 HETATM 13 C C8 FMN . . . F 2 24.852 11.773 24.443 1 35.24 ? C8 FMN 2033 B 1 HETATM 14 C C8M FMN . . . F 2 23.467 12.204 24.847 1 35.59 ? C8M FMN 2033 B 1 HETATM 15 C C9 FMN . . . F 2 25.079 11.246 23.181 1 35.75 ? C9 FMN 2033 B 1 HETATM 16 C C9A FMN . . . F 2 26.345 10.818 22.731 1 35.74 ? C9A FMN 2033 B 1 HETATM 17 N N10 FMN . . . F 2 26.62 10.261 21.437 1 35.84 ? N10 FMN 2033 B 1 HETATM 18 C C10 FMN . . . F 2 27.901 9.843 21.073 1 35.55 ? C10 FMN 2033 B 1 HETATM 19 C C1' FMN . . . F 2 25.512 10.096 20.45 1 32.98 ? C1' FMN 2033 B 1 HETATM 20 C C2' FMN . . . F 2 25.366 11.246 19.453 1 31.77 ? C2' FMN 2033 B 1 HETATM 21 O O2' FMN . . . F 2 25.433 12.533 20.052 1 33.34 ? O2' FMN 2033 B 1 HETATM 22 C C3' FMN . . . F 2 24.011 11.149 18.714 1 29.94 ? C3' FMN 2033 B 1 HETATM 23 O O3' FMN . . . F 2 22.946 10.941 19.692 1 30.24 ? O3' FMN 2033 B 1 HETATM 24 C C4' FMN . . . F 2 23.964 10.032 17.694 1 29.79 ? C4' FMN 2033 B 1 HETATM 25 O O4' FMN . . . F 2 24.966 10.266 16.682 1 30.28 ? O4' FMN 2033 B 1 HETATM 26 C C5' FMN . . . F 2 22.635 9.856 16.974 1 27.86 ? C5' FMN 2033 B 1 HETATM 27 O O5' FMN . . . F 2 21.99 11.129 16.779 1 30.26 ? O5' FMN 2033 B 1 HETATM 28 P P FMN . . . F 2 22.061 11.959 15.423 1 31.45 ? P FMN 2033 B 1 HETATM 29 O O1P FMN . . . F 2 23.51 12.126 15.03 1 28.72 ? O1P FMN 2033 B 1 HETATM 30 O O2P FMN . . . F 2 21.329 13.263 15.63 1 28.97 ? O2P FMN 2033 B 1 HETATM 31 O O3P FMN . . . F 2 21.347 11.016 14.388 1 30.72 ? O3P FMN 2033 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 426 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #