data_1G2J # _model_server_result.job_id HaD4xSF-s-fuOiTb4n3mUQ _model_server_result.datetime_utc '2025-02-27 13:13:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g2j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":9}' # _entry.id 1G2J # _exptl.entry_id 1G2J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1G2J _cell.length_a 24.31 _cell.length_b 24.31 _cell.length_c 123.79 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G2J _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -12.155 21.053078 20.631667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' C 3 A C 3 1_555 A P PYY 4 A PYY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? covale ? covale2 A O3' PYY 4 A PYY 4 1_555 A P G 5 A G 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? metalc ? metalc1 A O1P PYY 4 A PYY 4 1_565 B CA CA . A CA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc2 A O3' G 8 A G 8 1_555 B CA CA . A CA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc3 A O2' G 8 A G 8 1_555 B CA CA . A CA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc4 A OP1 G 8 A G 8 1_555 C CA CA . A CA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc5 A OP1 G 8 A G 8 8_675 C CA CA . A CA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc6 B CA CA . A CA 9 1_555 D O HOH . A HOH 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc7 B CA CA . A CA 9 1_555 D O HOH . A HOH 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc8 B CA CA . A CA 9 1_555 D O HOH . A HOH 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc9 B CA CA . A CA 9 1_555 D O HOH . A HOH 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc10 C CA CA . A CA 14 1_555 D O HOH . A HOH 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc11 C CA CA . A CA 14 1_555 D O HOH . A HOH 15 8_675 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc12 C CA CA . A CA 14 1_555 D O HOH . A HOH 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc13 C CA CA . A CA 14 1_555 D O HOH . A HOH 16 8_675 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? hydrog WATSON-CRICK hydrog1 A N3 C 1 A C 1 1_555 A N1 G 7 A G 7 12_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 C 1 A C 1 1_555 A O6 G 7 A G 7 12_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 C 1 A C 1 1_555 A N2 G 7 A G 7 12_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 C 2 A C 2 1_555 A N1 G 6 A G 6 12_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 C 2 A C 2 1_555 A O6 G 6 A G 6 12_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 C 2 A C 2 1_555 A N2 G 6 A G 6 12_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 C 3 A C 3 1_555 A N1 G 5 A G 5 12_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 C 3 A C 3 1_555 A O6 G 5 A G 5 12_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 C 3 A C 3 1_555 A N2 G 5 A G 5 12_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 G 5 A G 5 1_555 A N3 C 3 A C 3 12_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 G 5 A G 5 1_555 A O2 C 3 A C 3 12_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 G 5 A G 5 1_555 A N4 C 3 A C 3 12_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 G 6 A G 6 1_555 A N3 C 2 A C 2 12_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N2 G 6 A G 6 1_555 A O2 C 2 A C 2 12_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O6 G 6 A G 6 1_555 A N4 C 2 A C 2 12_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 G 7 A G 7 1_555 A N3 C 1 A C 1 12_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N2 G 7 A G 7 1_555 A O2 C 1 A C 1 12_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O6 G 7 A G 7 1_555 A N4 C 1 A C 1 12_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1G2J _atom_sites.fract_transf_matrix[1][1] 0.041135 _atom_sites.fract_transf_matrix[1][2] 0.023749 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.047499 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 9 9 CA CA . C 2 CA A 1 14 14 CA CA . D 3 HOH A 1 10 10 HOH HOH . D 3 HOH A 2 11 11 HOH HOH . D 3 HOH A 3 12 12 HOH HOH . D 3 HOH A 4 13 13 HOH HOH . D 3 HOH A 5 15 15 HOH HOH . D 3 HOH A 6 16 16 HOH HOH . D 3 HOH A 7 17 17 HOH HOH . D 3 HOH A 8 18 18 HOH HOH . D 3 HOH A 9 19 19 HOH HOH . D 3 HOH A 10 20 20 HOH HOH . D 3 HOH A 11 21 21 HOH HOH . D 3 HOH A 12 22 22 HOH HOH . D 3 HOH A 13 23 23 HOH HOH . D 3 HOH A 14 24 24 HOH HOH . D 3 HOH A 15 25 25 HOH HOH . D 3 HOH A 16 26 26 HOH HOH . D 3 HOH A 17 27 27 HOH HOH . D 3 HOH A 18 28 28 HOH HOH . D 3 HOH A 19 29 29 HOH HOH . D 3 HOH A 20 30 30 HOH HOH . D 3 HOH A 21 31 31 HOH HOH . D 3 HOH A 22 32 32 HOH HOH . D 3 HOH A 23 33 33 HOH HOH . D 3 HOH A 24 34 34 HOH HOH . D 3 HOH A 25 35 35 HOH HOH . D 3 HOH A 26 36 36 HOH HOH . D 3 HOH A 27 37 37 HOH HOH . D 3 HOH A 28 38 38 HOH HOH . D 3 HOH A 29 39 39 HOH HOH . D 3 HOH A 30 40 40 HOH HOH . D 3 HOH A 31 41 41 HOH HOH . D 3 HOH A 32 42 42 HOH HOH . D 3 HOH A 33 43 43 HOH HOH . D 3 HOH A 34 44 44 HOH HOH . D 3 HOH A 35 45 45 HOH HOH . D 3 HOH A 36 46 46 HOH HOH . D 3 HOH A 37 47 47 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -13.443 _atom_site.Cartn_y 26.117 _atom_site.Cartn_z 0.976 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 9 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #