data_1G2K # _model_server_result.job_id xvciGXGwrWgn6mw9BU2HlQ _model_server_result.datetime_utc '2025-02-27 02:46:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 1G2K # _exptl.entry_id 1G2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 631.738 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(7-BENZYL-4,5-DIHYDROXY-1,1-DIOXO-3,6-BIS-PHENOXYMETHYL-1L6-[1,2,7]THIADIAZEPAN-2-YLMETHYL)-N-METHYL-BENZAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1G2K _cell.length_a 58.508 _cell.length_b 86.832 _cell.length_c 46.648 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G2K _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C34 H37 N3 O7 S' _chem_comp.formula_weight 631.738 _chem_comp.id NM1 _chem_comp.mon_nstd_flag . _chem_comp.name 3-(7-BENZYL-4,5-DIHYDROXY-1,1-DIOXO-3,6-BIS-PHENOXYMETHYL-1L6-[1,2,7]THIADIAZEPAN-2-YLMETHYL)-N-METHYL-BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms AHA047 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 S02 NM1 sing 237 n n N01 C07 NM1 sing 238 n n N01 C08 NM1 sing 239 n n S02 N03 NM1 sing 240 n n S02 O15 NM1 doub 241 n n S02 O40 NM1 doub 242 n n N03 C04 NM1 sing 243 n n N03 C23 NM1 sing 244 n n C04 C05 NM1 sing 245 n n C04 C41 NM1 sing 246 n n C04 H04 NM1 sing 247 n n C05 C06 NM1 sing 248 n n C05 O30 NM1 sing 249 n n C05 H05 NM1 sing 250 n n C06 C07 NM1 sing 251 n n C06 O31 NM1 sing 252 n n C06 H06 NM1 sing 253 n n C07 C32 NM1 sing 254 n n C07 H07 NM1 sing 255 n n C08 C09 NM1 sing 256 n n C08 H081 NM1 sing 257 n n C08 H082 NM1 sing 258 n n C09 C10 NM1 doub 259 n y C09 C14 NM1 sing 260 n y C10 C11 NM1 sing 261 n y C10 H10 NM1 sing 262 n n C11 C12 NM1 doub 263 n y C11 C51 NM1 sing 264 n n C12 C13 NM1 sing 265 n y C12 H12 NM1 sing 266 n n C13 C14 NM1 doub 267 n y C13 H13 NM1 sing 268 n n C14 H14 NM1 sing 269 n n O16 C17 NM1 sing 270 n n O16 C41 NM1 sing 271 n n C17 C18 NM1 doub 272 n y C17 C22 NM1 sing 273 n y C18 C19 NM1 sing 274 n y C18 H18 NM1 sing 275 n n C19 C20 NM1 doub 276 n y C19 H19 NM1 sing 277 n n C20 C21 NM1 sing 278 n y C20 H20 NM1 sing 279 n n C21 C22 NM1 doub 280 n y C21 H21 NM1 sing 281 n n C22 H22 NM1 sing 282 n n C23 C24 NM1 sing 283 n n C23 H231 NM1 sing 284 n n C23 H232 NM1 sing 285 n n C24 C25 NM1 doub 286 n y C24 C29 NM1 sing 287 n y C25 C26 NM1 sing 288 n y C25 H25 NM1 sing 289 n n C26 C27 NM1 doub 290 n y C26 H26 NM1 sing 291 n n C27 C28 NM1 sing 292 n y C27 H27 NM1 sing 293 n n C28 C29 NM1 doub 294 n y C28 H28 NM1 sing 295 n n C29 H29 NM1 sing 296 n n O30 HO3 NM1 sing 297 n n O31 HO1 NM1 sing 298 n n C32 O33 NM1 sing 299 n n C32 H321 NM1 sing 300 n n C32 H322 NM1 sing 301 n n O33 C34 NM1 sing 302 n n C34 C35 NM1 doub 303 n y C34 C39 NM1 sing 304 n y C35 C36 NM1 sing 305 n y C35 H35 NM1 sing 306 n n C36 C37 NM1 doub 307 n y C36 H36 NM1 sing 308 n n C37 C38 NM1 sing 309 n y C37 H37 NM1 sing 310 n n C38 C39 NM1 doub 311 n y C38 H38 NM1 sing 312 n n C39 H39 NM1 sing 313 n n C41 H411 NM1 sing 314 n n C41 H412 NM1 sing 315 n n C51 O52 NM1 doub 316 n n C51 N53 NM1 sing 317 n n N53 C54 NM1 sing 318 n n N53 H53 NM1 sing 319 n n C54 H541 NM1 sing 320 n n C54 H542 NM1 sing 321 n n C54 H543 NM1 sing 322 n n # _atom_sites.entry_id 1G2K _atom_sites.fract_transf_matrix[1][1] 0.017092 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021437 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NM1 B 1 501 501 NM1 NM1 . D 3 HOH A 1 3004 3004 HOH HOH . D 3 HOH A 2 3005 3005 HOH HOH . D 3 HOH A 3 3008 3008 HOH HOH . D 3 HOH A 4 3009 3009 HOH HOH . D 3 HOH A 5 3012 3012 HOH HOH . D 3 HOH A 6 3024 3024 HOH HOH . D 3 HOH A 7 3026 3026 HOH HOH . D 3 HOH A 8 3027 3027 HOH HOH . D 3 HOH A 9 3030 3030 HOH HOH . D 3 HOH A 10 3032 3032 HOH HOH . D 3 HOH A 11 3034 3034 HOH HOH . D 3 HOH A 12 3040 3040 HOH HOH . D 3 HOH A 13 3041 3041 HOH HOH . D 3 HOH A 14 3042 3042 HOH HOH . D 3 HOH A 15 3043 3043 HOH HOH . D 3 HOH A 16 3046 3046 HOH HOH . D 3 HOH A 17 3048 3048 HOH HOH . D 3 HOH A 18 3050 3050 HOH HOH . D 3 HOH A 19 3052 3052 HOH HOH . D 3 HOH A 20 3054 3054 HOH HOH . D 3 HOH A 21 3055 3055 HOH HOH . D 3 HOH A 22 3058 3058 HOH HOH . D 3 HOH A 23 3059 3059 HOH HOH . D 3 HOH A 24 3062 3062 HOH HOH . D 3 HOH A 25 3065 3065 HOH HOH . D 3 HOH A 26 3071 3071 HOH HOH . E 3 HOH B 1 3001 3001 HOH HOH . E 3 HOH B 2 3002 3002 HOH HOH . E 3 HOH B 3 3003 3003 HOH HOH . E 3 HOH B 4 3006 3006 HOH HOH . E 3 HOH B 5 3007 3007 HOH HOH . E 3 HOH B 6 3010 3010 HOH HOH . E 3 HOH B 7 3011 3011 HOH HOH . E 3 HOH B 8 3013 3013 HOH HOH . E 3 HOH B 9 3014 3014 HOH HOH . E 3 HOH B 10 3015 3015 HOH HOH . E 3 HOH B 11 3016 3016 HOH HOH . E 3 HOH B 12 3017 3017 HOH HOH . E 3 HOH B 13 3018 3018 HOH HOH . E 3 HOH B 14 3019 3019 HOH HOH . E 3 HOH B 15 3020 3020 HOH HOH . E 3 HOH B 16 3021 3021 HOH HOH . E 3 HOH B 17 3022 3022 HOH HOH . E 3 HOH B 18 3023 3023 HOH HOH . E 3 HOH B 19 3025 3025 HOH HOH . E 3 HOH B 20 3028 3028 HOH HOH . E 3 HOH B 21 3029 3029 HOH HOH . E 3 HOH B 22 3031 3031 HOH HOH . E 3 HOH B 23 3033 3033 HOH HOH . E 3 HOH B 24 3035 3035 HOH HOH . E 3 HOH B 25 3036 3036 HOH HOH . E 3 HOH B 26 3037 3037 HOH HOH . E 3 HOH B 27 3038 3038 HOH HOH . E 3 HOH B 28 3039 3039 HOH HOH . E 3 HOH B 29 3044 3044 HOH HOH . E 3 HOH B 30 3045 3045 HOH HOH . E 3 HOH B 31 3047 3047 HOH HOH . E 3 HOH B 32 3049 3049 HOH HOH . E 3 HOH B 33 3051 3051 HOH HOH . E 3 HOH B 34 3053 3053 HOH HOH . E 3 HOH B 35 3056 3056 HOH HOH . E 3 HOH B 36 3057 3057 HOH HOH . E 3 HOH B 37 3060 3060 HOH HOH . E 3 HOH B 38 3061 3061 HOH HOH . E 3 HOH B 39 3063 3063 HOH HOH . E 3 HOH B 40 3064 3064 HOH HOH . E 3 HOH B 41 3066 3066 HOH HOH . E 3 HOH B 42 3067 3067 HOH HOH . E 3 HOH B 43 3068 3068 HOH HOH . E 3 HOH B 44 3069 3069 HOH HOH . E 3 HOH B 45 3070 3070 HOH HOH . E 3 HOH B 46 3072 3072 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 NM1 . . . C 2 11.349 23.709 5.942 1 21.99 ? N01 NM1 501 B 1 HETATM 2 S S02 NM1 . . . C 2 11.806 22.203 6.446 1 23.13 ? S02 NM1 501 B 1 HETATM 3 N N03 NM1 . . . C 2 13.431 22.292 6.215 1 20.53 ? N03 NM1 501 B 1 HETATM 4 C C04 NM1 . . . C 2 13.851 22.223 4.796 1 23.5 ? C04 NM1 501 B 1 HETATM 5 C C05 NM1 . . . C 2 14.022 23.605 4.144 1 20.11 ? C05 NM1 501 B 1 HETATM 6 C C06 NM1 . . . C 2 13.048 24.679 4.615 1 20.62 ? C06 NM1 501 B 1 HETATM 7 C C07 NM1 . . . C 2 11.556 24.303 4.61 1 20.49 ? C07 NM1 501 B 1 HETATM 8 C C08 NM1 . . . C 2 10.17 24.189 6.519 1 24.06 ? C08 NM1 501 B 1 HETATM 9 C C09 NM1 . . . C 2 9.892 25.457 7.218 1 23.29 ? C09 NM1 501 B 1 HETATM 10 C C10 NM1 . . . C 2 8.825 26.293 6.815 1 22.54 ? C10 NM1 501 B 1 HETATM 11 C C11 NM1 . . . C 2 8.6 27.521 7.49 1 25.39 ? C11 NM1 501 B 1 HETATM 12 C C12 NM1 . . . C 2 9.456 27.914 8.582 1 24.01 ? C12 NM1 501 B 1 HETATM 13 C C13 NM1 . . . C 2 10.527 27.076 8.987 1 23.46 ? C13 NM1 501 B 1 HETATM 14 C C14 NM1 . . . C 2 10.745 25.849 8.302 1 22.88 ? C14 NM1 501 B 1 HETATM 15 O O15 NM1 . . . C 2 11.236 21.156 5.599 1 19.88 ? O15 NM1 501 B 1 HETATM 16 O O16 NM1 . . . C 2 14.854 20.35 3.56 1 27.68 ? O16 NM1 501 B 1 HETATM 17 C C17 NM1 . . . C 2 15.864 19.459 3.222 1 27.94 ? C17 NM1 501 B 1 HETATM 18 C C18 NM1 . . . C 2 16.84 19.017 4.19 1 28.82 ? C18 NM1 501 B 1 HETATM 19 C C19 NM1 . . . C 2 17.875 18.098 3.83 1 28.02 ? C19 NM1 501 B 1 HETATM 20 C C20 NM1 . . . C 2 17.943 17.605 2.489 1 28.29 ? C20 NM1 501 B 1 HETATM 21 C C21 NM1 . . . C 2 16.985 18.03 1.517 1 27.44 ? C21 NM1 501 B 1 HETATM 22 C C22 NM1 . . . C 2 15.954 18.953 1.885 1 27.39 ? C22 NM1 501 B 1 HETATM 23 C C23 NM1 . . . C 2 14.271 22.898 7.306 1 23.78 ? C23 NM1 501 B 1 HETATM 24 C C24 NM1 . . . C 2 15.213 22.033 8.11 1 24.24 ? C24 NM1 501 B 1 HETATM 25 C C25 NM1 . . . C 2 14.698 21.122 9.083 1 26.41 ? C25 NM1 501 B 1 HETATM 26 C C26 NM1 . . . C 2 15.588 20.294 9.842 1 26.76 ? C26 NM1 501 B 1 HETATM 27 C C27 NM1 . . . C 2 17.005 20.379 9.626 1 27.91 ? C27 NM1 501 B 1 HETATM 28 C C28 NM1 . . . C 2 17.531 21.294 8.653 1 27.82 ? C28 NM1 501 B 1 HETATM 29 C C29 NM1 . . . C 2 16.634 22.115 7.901 1 26.57 ? C29 NM1 501 B 1 HETATM 30 O O30 NM1 . . . C 2 15.32 24.102 4.395 1 21.02 ? O30 NM1 501 B 1 HETATM 31 O O31 NM1 . . . C 2 13.274 25.832 3.814 1 18.62 ? O31 NM1 501 B 1 HETATM 32 C C32 NM1 . . . C 2 10.913 23.466 3.47 1 22.38 ? C32 NM1 501 B 1 HETATM 33 O O33 NM1 . . . C 2 9.472 23.505 3.658 1 24.7 ? O33 NM1 501 B 1 HETATM 34 C C34 NM1 . . . C 2 8.661 24.401 3.003 1 25.64 ? C34 NM1 501 B 1 HETATM 35 C C35 NM1 . . . C 2 9.116 25.712 2.605 1 26.05 ? C35 NM1 501 B 1 HETATM 36 C C36 NM1 . . . C 2 8.244 26.618 1.933 1 28.2 ? C36 NM1 501 B 1 HETATM 37 C C37 NM1 . . . C 2 6.9 26.23 1.653 1 26.48 ? C37 NM1 501 B 1 HETATM 38 C C38 NM1 . . . C 2 6.432 24.943 2.037 1 28.53 ? C38 NM1 501 B 1 HETATM 39 C C39 NM1 . . . C 2 7.313 24.033 2.707 1 27.29 ? C39 NM1 501 B 1 HETATM 40 O O40 NM1 . . . C 2 11.584 22.102 7.888 1 22.68 ? O40 NM1 501 B 1 HETATM 41 C C41 NM1 . . . C 2 15.082 21.332 4.6 1 23.97 ? C41 NM1 501 B 1 HETATM 42 C C51 NM1 . . . C 2 7.487 28.417 7.05 1 26.95 ? C51 NM1 501 B 1 HETATM 43 O O52 NM1 . . . C 2 7.66 29.662 7.084 1 26.78 ? O52 NM1 501 B 1 HETATM 44 N N53 NM1 . . . C 2 6.29 27.868 6.633 1 25.95 ? N53 NM1 501 B 1 HETATM 45 C C54 NM1 . . . C 2 5.236 28.784 6.247 1 27.69 ? C54 NM1 501 B 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 45 #