data_1G3D # _model_server_result.job_id 0BIHcghY7qO9BqT3QkNszg _model_server_result.datetime_utc '2025-02-27 07:25:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g3d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 1G3D # _exptl.entry_id 1G3D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 237.255 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(5-CARBAMIMIDOYL-2-HYDROXY-BENZYLAMINO)-PROPIONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1G3D _cell.length_a 63.81 _cell.length_b 63.26 _cell.length_c 69.25 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G3D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 22 1_555 A SG CYS 142 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 30 A CYS 42 1_555 A SG CYS 46 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 114 A CYS 128 1_555 A SG CYS 215 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 121 A CYS 136 1_555 A SG CYS 188 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 153 A CYS 168 1_555 A SG CYS 167 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 A SG CYS 178 A CYS 191 1_555 A SG CYS 202 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OE1 GLU 57 A GLU 70 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc2 A O ASN 59 A ASN 72 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc3 A O VAL 62 A VAL 75 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc4 A OE2 GLU 67 A GLU 80 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc5 B CU CU . A CU 501 1_555 E N 108 . A 108 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc6 B CU CU . A CU 501 1_555 E OXT 108 . A 108 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc7 B CU CU . A CU 501 1_555 E O1 108 . A 108 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc8 B CU CU . A CU 501 1_555 F O HOH . A HOH 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc9 C CA CA . A CA 502 1_555 F O HOH . A HOH 774 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc10 C CA CA . A CA 502 1_555 F O HOH . A HOH 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? # _chem_comp.formula 'C11 H15 N3 O3' _chem_comp.formula_weight 237.255 _chem_comp.id 108 _chem_comp.mon_nstd_flag . _chem_comp.name '2-(5-CARBAMIMIDOYL-2-HYDROXY-BENZYLAMINO)-PROPIONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 108 doub 1 n y C1 C6 108 sing 2 n y C1 C8 108 sing 3 n n C2 C3 108 sing 4 n y C2 H2 108 sing 5 n n C3 C4 108 doub 6 n y C3 C7 108 sing 7 n n C4 C5 108 sing 8 n y C4 O1 108 sing 9 n n C5 C6 108 doub 10 n y C5 H5 108 sing 11 n n C6 H6 108 sing 12 n n C7 N 108 sing 13 n n C7 H71 108 sing 14 n n C7 H72 108 sing 15 n n C8 N1 108 sing 16 n n C8 N2 108 doub 17 n n O1 HO1 108 sing 18 n n N1 HN11 108 sing 19 n n N1 HN12 108 sing 20 n n N2 HN2 108 sing 21 n n N CA 108 sing 22 n n N H 108 sing 23 n n CA CB 108 sing 24 n n CA C 108 sing 25 n n CA HA 108 sing 26 n n CB HB1 108 sing 27 n n CB HB2 108 sing 28 n n CB HB3 108 sing 29 n n C O 108 doub 30 n n C OXT 108 sing 31 n n OXT HXT 108 sing 32 n n # _atom_sites.entry_id 1G3D _atom_sites.fract_transf_matrix[1][1] 0.015672 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015808 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01444 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 501 501 CU CU . C 3 CA A 1 502 502 CA CA . D 4 SO4 A 1 701 701 SO4 SO4 . E 5 108 A 1 601 601 108 108 . F 6 HOH A 1 702 1 HOH HOH . F 6 HOH A 2 703 2 HOH HOH . F 6 HOH A 3 704 3 HOH HOH . F 6 HOH A 4 705 4 HOH HOH . F 6 HOH A 5 706 5 HOH HOH . F 6 HOH A 6 707 6 HOH HOH . F 6 HOH A 7 708 7 HOH HOH . F 6 HOH A 8 709 8 HOH HOH . F 6 HOH A 9 710 9 HOH HOH . F 6 HOH A 10 711 10 HOH HOH . F 6 HOH A 11 712 11 HOH HOH . F 6 HOH A 12 713 12 HOH HOH . F 6 HOH A 13 714 13 HOH HOH . F 6 HOH A 14 715 14 HOH HOH . F 6 HOH A 15 716 15 HOH HOH . F 6 HOH A 16 717 16 HOH HOH . F 6 HOH A 17 718 17 HOH HOH . F 6 HOH A 18 719 18 HOH HOH . F 6 HOH A 19 720 19 HOH HOH . F 6 HOH A 20 721 20 HOH HOH . F 6 HOH A 21 722 21 HOH HOH . F 6 HOH A 22 723 22 HOH HOH . F 6 HOH A 23 724 23 HOH HOH . F 6 HOH A 24 725 24 HOH HOH . F 6 HOH A 25 726 25 HOH HOH . F 6 HOH A 26 727 26 HOH HOH . F 6 HOH A 27 728 27 HOH HOH . F 6 HOH A 28 729 28 HOH HOH . F 6 HOH A 29 730 29 HOH HOH . F 6 HOH A 30 731 30 HOH HOH . F 6 HOH A 31 732 31 HOH HOH . F 6 HOH A 32 733 32 HOH HOH . F 6 HOH A 33 734 33 HOH HOH . F 6 HOH A 34 735 34 HOH HOH . F 6 HOH A 35 736 35 HOH HOH . F 6 HOH A 36 737 36 HOH HOH . F 6 HOH A 37 738 37 HOH HOH . F 6 HOH A 38 739 38 HOH HOH . F 6 HOH A 39 740 39 HOH HOH . F 6 HOH A 40 741 40 HOH HOH . F 6 HOH A 41 742 41 HOH HOH . F 6 HOH A 42 743 42 HOH HOH . F 6 HOH A 43 744 43 HOH HOH . F 6 HOH A 44 745 44 HOH HOH . F 6 HOH A 45 746 45 HOH HOH . F 6 HOH A 46 747 46 HOH HOH . F 6 HOH A 47 748 47 HOH HOH . F 6 HOH A 48 749 48 HOH HOH . F 6 HOH A 49 750 49 HOH HOH . F 6 HOH A 50 751 50 HOH HOH . F 6 HOH A 51 752 51 HOH HOH . F 6 HOH A 52 753 52 HOH HOH . F 6 HOH A 53 754 53 HOH HOH . F 6 HOH A 54 755 54 HOH HOH . F 6 HOH A 55 756 55 HOH HOH . F 6 HOH A 56 757 56 HOH HOH . F 6 HOH A 57 758 57 HOH HOH . F 6 HOH A 58 759 58 HOH HOH . F 6 HOH A 59 760 59 HOH HOH . F 6 HOH A 60 761 60 HOH HOH . F 6 HOH A 61 762 61 HOH HOH . F 6 HOH A 62 763 62 HOH HOH . F 6 HOH A 63 764 63 HOH HOH . F 6 HOH A 64 765 64 HOH HOH . F 6 HOH A 65 766 65 HOH HOH . F 6 HOH A 66 767 66 HOH HOH . F 6 HOH A 67 768 67 HOH HOH . F 6 HOH A 68 769 68 HOH HOH . F 6 HOH A 69 770 69 HOH HOH . F 6 HOH A 70 771 70 HOH HOH . F 6 HOH A 71 772 71 HOH HOH . F 6 HOH A 72 773 72 HOH HOH . F 6 HOH A 73 774 73 HOH HOH . F 6 HOH A 74 775 74 HOH HOH . F 6 HOH A 75 776 75 HOH HOH . F 6 HOH A 76 777 76 HOH HOH . F 6 HOH A 77 778 77 HOH HOH . F 6 HOH A 78 779 78 HOH HOH . F 6 HOH A 79 780 79 HOH HOH . F 6 HOH A 80 781 80 HOH HOH . F 6 HOH A 81 782 81 HOH HOH . F 6 HOH A 82 783 82 HOH HOH . F 6 HOH A 83 784 83 HOH HOH . F 6 HOH A 84 785 84 HOH HOH . F 6 HOH A 85 786 85 HOH HOH . F 6 HOH A 86 787 86 HOH HOH . F 6 HOH A 87 788 87 HOH HOH . F 6 HOH A 88 789 88 HOH HOH . F 6 HOH A 89 790 89 HOH HOH . F 6 HOH A 90 791 90 HOH HOH . F 6 HOH A 91 792 91 HOH HOH . F 6 HOH A 92 793 92 HOH HOH . F 6 HOH A 93 794 93 HOH HOH . F 6 HOH A 94 795 94 HOH HOH . F 6 HOH A 95 796 95 HOH HOH . F 6 HOH A 96 797 96 HOH HOH . F 6 HOH A 97 798 97 HOH HOH . F 6 HOH A 98 799 98 HOH HOH . F 6 HOH A 99 800 99 HOH HOH . F 6 HOH A 100 801 100 HOH HOH . F 6 HOH A 101 802 101 HOH HOH . F 6 HOH A 102 803 102 HOH HOH . F 6 HOH A 103 804 103 HOH HOH . F 6 HOH A 104 805 104 HOH HOH . F 6 HOH A 105 806 105 HOH HOH . F 6 HOH A 106 807 106 HOH HOH . F 6 HOH A 107 808 107 HOH HOH . F 6 HOH A 108 809 108 HOH HOH . F 6 HOH A 109 810 109 HOH HOH . F 6 HOH A 110 811 110 HOH HOH . F 6 HOH A 111 812 111 HOH HOH . F 6 HOH A 112 813 112 HOH HOH . F 6 HOH A 113 814 113 HOH HOH . F 6 HOH A 114 815 114 HOH HOH . F 6 HOH A 115 816 115 HOH HOH . F 6 HOH A 116 817 116 HOH HOH . F 6 HOH A 117 818 117 HOH HOH . F 6 HOH A 118 819 118 HOH HOH . F 6 HOH A 119 820 119 HOH HOH . F 6 HOH A 120 821 120 HOH HOH . F 6 HOH A 121 822 121 HOH HOH . F 6 HOH A 122 823 122 HOH HOH . F 6 HOH A 123 824 123 HOH HOH . F 6 HOH A 124 825 124 HOH HOH . F 6 HOH A 125 826 125 HOH HOH . F 6 HOH A 126 827 126 HOH HOH . F 6 HOH A 127 828 127 HOH HOH . F 6 HOH A 128 829 128 HOH HOH . F 6 HOH A 129 830 129 HOH HOH . F 6 HOH A 130 831 130 HOH HOH . F 6 HOH A 131 832 131 HOH HOH . F 6 HOH A 132 833 132 HOH HOH . F 6 HOH A 133 834 133 HOH HOH . F 6 HOH A 134 835 134 HOH HOH . F 6 HOH A 135 836 135 HOH HOH . F 6 HOH A 136 837 136 HOH HOH . F 6 HOH A 137 838 137 HOH HOH . F 6 HOH A 138 839 138 HOH HOH . F 6 HOH A 139 840 139 HOH HOH . F 6 HOH A 140 841 140 HOH HOH . F 6 HOH A 141 842 141 HOH HOH . F 6 HOH A 142 843 142 HOH HOH . F 6 HOH A 143 844 143 HOH HOH . F 6 HOH A 144 845 144 HOH HOH . F 6 HOH A 145 846 145 HOH HOH . F 6 HOH A 146 847 146 HOH HOH . F 6 HOH A 147 848 147 HOH HOH . F 6 HOH A 148 849 148 HOH HOH . F 6 HOH A 149 850 149 HOH HOH . F 6 HOH A 150 851 150 HOH HOH . F 6 HOH A 151 852 151 HOH HOH . F 6 HOH A 152 853 152 HOH HOH . F 6 HOH A 153 854 153 HOH HOH . F 6 HOH A 154 855 154 HOH HOH . F 6 HOH A 155 856 155 HOH HOH . F 6 HOH A 156 857 156 HOH HOH . F 6 HOH A 157 858 157 HOH HOH . F 6 HOH A 158 859 158 HOH HOH . F 6 HOH A 159 860 159 HOH HOH . F 6 HOH A 160 861 160 HOH HOH . F 6 HOH A 161 862 161 HOH HOH . F 6 HOH A 162 863 162 HOH HOH . F 6 HOH A 163 864 163 HOH HOH . F 6 HOH A 164 865 164 HOH HOH . F 6 HOH A 165 866 165 HOH HOH . F 6 HOH A 166 867 166 HOH HOH . F 6 HOH A 167 868 167 HOH HOH . F 6 HOH A 168 869 168 HOH HOH . F 6 HOH A 169 870 169 HOH HOH . F 6 HOH A 170 871 170 HOH HOH . F 6 HOH A 171 872 171 HOH HOH . F 6 HOH A 172 873 172 HOH HOH . F 6 HOH A 173 874 173 HOH HOH . F 6 HOH A 174 875 174 HOH HOH . F 6 HOH A 175 876 175 HOH HOH . F 6 HOH A 176 877 176 HOH HOH . F 6 HOH A 177 878 177 HOH HOH . F 6 HOH A 178 879 178 HOH HOH . F 6 HOH A 179 880 179 HOH HOH . F 6 HOH A 180 881 180 HOH HOH . F 6 HOH A 181 882 181 HOH HOH . F 6 HOH A 182 883 182 HOH HOH . F 6 HOH A 183 884 183 HOH HOH . F 6 HOH A 184 885 184 HOH HOH . F 6 HOH A 185 886 185 HOH HOH . F 6 HOH A 186 887 186 HOH HOH . F 6 HOH A 187 888 187 HOH HOH . F 6 HOH A 188 889 188 HOH HOH . F 6 HOH A 189 890 189 HOH HOH . F 6 HOH A 190 891 190 HOH HOH . F 6 HOH A 191 892 191 HOH HOH . F 6 HOH A 192 893 192 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 108 . . . E 5 43.987 -2.697 26.326 1 26.5 ? C1 108 601 A 1 HETATM 2 C C2 108 . . . E 5 43.347 -3.241 27.436 1 28.93 ? C2 108 601 A 1 HETATM 3 C C3 108 . . . E 5 43.198 -2.508 28.62 1 29.86 ? C3 108 601 A 1 HETATM 4 C C4 108 . . . E 5 43.703 -1.21 28.678 1 29.75 ? C4 108 601 A 1 HETATM 5 C C5 108 . . . E 5 44.339 -0.674 27.564 1 28.83 ? C5 108 601 A 1 HETATM 6 C C6 108 . . . E 5 44.48 -1.405 26.404 1 27.54 ? C6 108 601 A 1 HETATM 7 C C7 108 . . . E 5 42.522 -3.12 29.75 1 33.97 ? C7 108 601 A 1 HETATM 8 C C8 108 . . . E 5 44.213 -3.492 25.132 1 25.4 ? C8 108 601 A 1 HETATM 9 O O1 108 . . . E 5 43.621 -0.401 29.754 1 30.49 ? O1 108 601 A 1 HETATM 10 N N1 108 . . . E 5 44.613 -2.906 24.012 1 23.37 ? N1 108 601 A 1 HETATM 11 N N2 108 . . . E 5 44.027 -4.804 25.156 1 26.01 ? N2 108 601 A 1 HETATM 12 N N 108 . . . E 5 42.318 -2.543 30.902 1 35.02 ? N 108 601 A 1 HETATM 13 C CA 108 . . . E 5 41.619 -3.318 31.925 1 39.08 ? CA 108 601 A 1 HETATM 14 C CB 108 . . . E 5 42.58 -4.292 32.589 1 39.19 ? CB 108 601 A 1 HETATM 15 C C 108 . . . E 5 40.993 -2.406 32.973 1 39.71 ? C 108 601 A 1 HETATM 16 O O 108 . . . E 5 40.261 -2.911 33.833 1 42.59 ? O 108 601 A 1 HETATM 17 O OXT 108 . . . E 5 41.274 -1.153 32.89 1 40.42 ? OXT 108 601 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 617 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 17 #