data_1G3I # _model_server_result.job_id x1ofMO4Jh_SK8kjLwajokA _model_server_result.datetime_utc '2025-02-27 18:58:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g3i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":450}' # _entry.id 1G3I # _exptl.entry_id 1G3I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1G3I _cell.length_a 209.223 _cell.length_b 220.579 _cell.length_c 241.07 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G3I _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 Y N N ? 3 Z N N ? 3 AA N N ? 3 BA N N ? 3 CA N N ? 3 DA N N ? 3 EA N N ? 3 FA N N ? 3 GA N N ? 3 HA N N ? 3 IA N N ? 3 JA N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1G3I _atom_sites.fract_transf_matrix[1][1] 0.00478 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004534 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004148 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Y 3 ATP A 1 450 450 ATP ATP . Z 3 ATP B 1 451 450 ATP ATP . AA 3 ATP C 1 452 450 ATP ATP . BA 3 ATP D 1 453 450 ATP ATP . CA 3 ATP E 1 454 450 ATP ATP . DA 3 ATP F 1 455 450 ATP ATP . EA 3 ATP S 1 456 450 ATP ATP . FA 3 ATP T 1 457 450 ATP ATP . GA 3 ATP U 1 458 450 ATP ATP . HA 3 ATP V 1 459 450 ATP ATP . IA 3 ATP W 1 460 450 ATP ATP . JA 3 ATP X 1 461 450 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . Y 3 178.854 82.527 121.862 1 62.17 ? PG ATP 450 A 1 HETATM 2 O O1G ATP . . . Y 3 178.904 83.781 120.989 1 59.48 ? O1G ATP 450 A 1 HETATM 3 O O2G ATP . . . Y 3 177.962 82.581 123.108 1 60.67 ? O2G ATP 450 A 1 HETATM 4 O O3G ATP . . . Y 3 178.846 81.207 121.108 1 60.54 ? O3G ATP 450 A 1 HETATM 5 P PB ATP . . . Y 3 180.982 83.656 123.605 1 39.26 ? PB ATP 450 A 1 HETATM 6 O O1B ATP . . . Y 3 181.716 84.734 122.875 1 40.79 ? O1B ATP 450 A 1 HETATM 7 O O2B ATP . . . Y 3 179.895 84.028 124.556 1 37.94 ? O2B ATP 450 A 1 HETATM 8 O O3B ATP . . . Y 3 180.333 82.605 122.564 1 51.24 ? O3B ATP 450 A 1 HETATM 9 P PA ATP . . . Y 3 181.842 82.256 125.904 1 27.78 ? PA ATP 450 A 1 HETATM 10 O O1A ATP . . . Y 3 180.398 81.897 125.974 1 28.52 ? O1A ATP 450 A 1 HETATM 11 O O2A ATP . . . Y 3 182.466 83.111 126.967 1 26.09 ? O2A ATP 450 A 1 HETATM 12 O O3A ATP . . . Y 3 182.055 82.84 124.441 1 33.82 ? O3A ATP 450 A 1 HETATM 13 O O5' ATP . . . Y 3 182.606 80.886 125.912 1 22.07 ? O5' ATP 450 A 1 HETATM 14 C C5' ATP . . . Y 3 184.005 80.845 125.919 1 20.67 ? C5' ATP 450 A 1 HETATM 15 C C4' ATP . . . Y 3 184.464 79.746 126.823 1 19.98 ? C4' ATP 450 A 1 HETATM 16 O O4' ATP . . . Y 3 185.888 79.685 126.699 1 18.91 ? O4' ATP 450 A 1 HETATM 17 C C3' ATP . . . Y 3 184.179 80.003 128.292 1 20.39 ? C3' ATP 450 A 1 HETATM 18 O O3' ATP . . . Y 3 184.093 78.811 129.052 1 17.63 ? O3' ATP 450 A 1 HETATM 19 C C2' ATP . . . Y 3 185.386 80.802 128.744 1 20.97 ? C2' ATP 450 A 1 HETATM 20 O O2' ATP . . . Y 3 185.726 80.325 130.029 1 24.09 ? O2' ATP 450 A 1 HETATM 21 C C1' ATP . . . Y 3 186.478 80.411 127.744 1 19.14 ? C1' ATP 450 A 1 HETATM 22 N N9 ATP . . . Y 3 187.106 81.576 127.116 1 18.36 ? N9 ATP 450 A 1 HETATM 23 C C8 ATP . . . Y 3 186.931 82.001 125.819 1 18.82 ? C8 ATP 450 A 1 HETATM 24 N N7 ATP . . . Y 3 187.688 83.011 125.485 1 17.87 ? N7 ATP 450 A 1 HETATM 25 C C5 ATP . . . Y 3 188.39 83.286 126.643 1 18.05 ? C5 ATP 450 A 1 HETATM 26 C C6 ATP . . . Y 3 189.356 84.219 126.927 1 18.44 ? C6 ATP 450 A 1 HETATM 27 N N6 ATP . . . Y 3 189.816 85.084 126.048 1 20.15 ? N6 ATP 450 A 1 HETATM 28 N N1 ATP . . . Y 3 189.852 84.241 128.165 1 19.67 ? N1 ATP 450 A 1 HETATM 29 C C2 ATP . . . Y 3 189.386 83.364 129.057 1 20.2 ? C2 ATP 450 A 1 HETATM 30 N N3 ATP . . . Y 3 188.477 82.425 128.911 1 18.6 ? N3 ATP 450 A 1 HETATM 31 C C4 ATP . . . Y 3 188.016 82.434 127.662 1 18.23 ? C4 ATP 450 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #