data_1G3K # _model_server_result.job_id 8vIMXljW4KwadTmIMEsIwg _model_server_result.datetime_utc '2025-02-27 19:12:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g3k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":500}' # _entry.id 1G3K # _exptl.entry_id 1G3K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1G3K _cell.length_a 79.018 _cell.length_b 121.799 _cell.length_c 126.179 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G3K _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 126.179 4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 126.179 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 157 A GLY 157 1_555 D NA NA . A NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc2 A O CYS 160 A CYS 160 1_555 D NA NA . A NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc3 A O THR 163 A THR 163 1_555 D NA NA . A NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc4 G O HOH . A HOH 236 1_555 D NA NA . A NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc5 G O HOH . A HOH 237 1_555 D NA NA . A NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc6 G O HOH . A HOH 238 1_555 D NA NA . A NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc7 B O GLY 157 B GLY 157 1_555 E NA NA . B NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc8 B O CYS 160 B CYS 160 1_555 E NA NA . B NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc9 B O THR 163 B THR 163 1_555 E NA NA . B NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc10 E NA NA . B NA 500 1_555 H O HOH . B HOH 1234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc11 E NA NA . B NA 500 1_555 H O HOH . B HOH 1235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc12 E NA NA . B NA 500 1_555 H O HOH . B HOH 1236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc13 C O GLY 157 C GLY 157 1_555 F NA NA . C NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc14 C O CYS 160 C CYS 160 1_555 F NA NA . C NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc15 C O THR 163 C THR 163 1_555 F NA NA . C NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc16 F NA NA . C NA 500 1_555 I O HOH . C HOH 2238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc17 F NA NA . C NA 500 1_555 I O HOH . C HOH 2239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc18 F NA NA . C NA 500 1_555 I O HOH . C HOH 2254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1G3K _atom_sites.fract_transf_matrix[1][1] 0.012655 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00821 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007925 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NA A 1 500 500 NA NA1 . E 2 NA B 1 500 500 NA NA1 . F 2 NA C 1 500 500 NA NA1 . G 3 HOH A 1 201 201 HOH HOH . G 3 HOH A 2 202 202 HOH HOH . G 3 HOH A 3 203 203 HOH HOH . G 3 HOH A 4 204 204 HOH HOH . G 3 HOH A 5 205 205 HOH HOH . G 3 HOH A 6 206 206 HOH HOH . G 3 HOH A 7 207 207 HOH HOH . G 3 HOH A 8 208 208 HOH HOH . G 3 HOH A 9 209 209 HOH HOH . G 3 HOH A 10 210 210 HOH HOH . G 3 HOH A 11 211 211 HOH HOH . G 3 HOH A 12 213 213 HOH HOH . G 3 HOH A 13 215 215 HOH HOH . G 3 HOH A 14 217 217 HOH HOH . G 3 HOH A 15 218 218 HOH HOH . G 3 HOH A 16 219 219 HOH HOH . G 3 HOH A 17 220 220 HOH HOH . G 3 HOH A 18 221 221 HOH HOH . G 3 HOH A 19 222 222 HOH HOH . G 3 HOH A 20 223 223 HOH HOH . G 3 HOH A 21 225 225 HOH HOH . G 3 HOH A 22 226 226 HOH HOH . G 3 HOH A 23 227 227 HOH HOH . G 3 HOH A 24 228 228 HOH HOH . G 3 HOH A 25 230 230 HOH HOH . G 3 HOH A 26 231 231 HOH HOH . G 3 HOH A 27 232 232 HOH HOH . G 3 HOH A 28 233 233 HOH HOH . G 3 HOH A 29 234 234 HOH HOH . G 3 HOH A 30 235 235 HOH HOH . G 3 HOH A 31 236 236 HOH HOH . G 3 HOH A 32 237 237 HOH HOH . G 3 HOH A 33 238 238 HOH HOH . G 3 HOH A 34 239 239 HOH HOH . G 3 HOH A 35 240 240 HOH HOH . G 3 HOH A 36 241 241 HOH HOH . G 3 HOH A 37 242 242 HOH HOH . G 3 HOH A 38 243 243 HOH HOH . G 3 HOH A 39 244 244 HOH HOH . G 3 HOH A 40 245 245 HOH HOH . G 3 HOH A 41 247 247 HOH HOH . G 3 HOH A 42 248 248 HOH HOH . G 3 HOH A 43 249 249 HOH HOH . G 3 HOH A 44 250 250 HOH HOH . G 3 HOH A 45 251 251 HOH HOH . G 3 HOH A 46 252 252 HOH HOH . G 3 HOH A 47 253 253 HOH HOH . G 3 HOH A 48 254 254 HOH HOH . G 3 HOH A 49 257 257 HOH HOH . G 3 HOH A 50 258 258 HOH HOH . G 3 HOH A 51 259 259 HOH HOH . G 3 HOH A 52 260 260 HOH HOH . G 3 HOH A 53 261 261 HOH HOH . G 3 HOH A 54 262 262 HOH HOH . G 3 HOH A 55 263 263 HOH HOH . G 3 HOH A 56 264 264 HOH HOH . G 3 HOH A 57 265 265 HOH HOH . G 3 HOH A 58 266 266 HOH HOH . G 3 HOH A 59 267 267 HOH HOH . G 3 HOH A 60 268 268 HOH HOH . G 3 HOH A 61 269 269 HOH HOH . G 3 HOH A 62 270 270 HOH HOH . G 3 HOH A 63 1231 231 HOH HOH . G 3 HOH A 64 1243 243 HOH HOH . G 3 HOH A 65 1260 260 HOH HOH . H 3 HOH B 1 212 212 HOH HOH . H 3 HOH B 2 246 246 HOH HOH . H 3 HOH B 3 1201 201 HOH HOH . H 3 HOH B 4 1202 202 HOH HOH . H 3 HOH B 5 1203 203 HOH HOH . H 3 HOH B 6 1204 204 HOH HOH . H 3 HOH B 7 1205 205 HOH HOH . H 3 HOH B 8 1206 206 HOH HOH . H 3 HOH B 9 1207 207 HOH HOH . H 3 HOH B 10 1208 208 HOH HOH . H 3 HOH B 11 1209 209 HOH HOH . H 3 HOH B 12 1210 210 HOH HOH . H 3 HOH B 13 1211 211 HOH HOH . H 3 HOH B 14 1212 212 HOH HOH . H 3 HOH B 15 1213 213 HOH HOH . H 3 HOH B 16 1214 214 HOH HOH . H 3 HOH B 17 1215 215 HOH HOH . H 3 HOH B 18 1217 217 HOH HOH . H 3 HOH B 19 1218 218 HOH HOH . H 3 HOH B 20 1219 219 HOH HOH . H 3 HOH B 21 1220 220 HOH HOH . H 3 HOH B 22 1221 221 HOH HOH . H 3 HOH B 23 1222 222 HOH HOH . H 3 HOH B 24 1223 223 HOH HOH . H 3 HOH B 25 1224 224 HOH HOH . H 3 HOH B 26 1225 225 HOH HOH . H 3 HOH B 27 1226 226 HOH HOH . H 3 HOH B 28 1227 227 HOH HOH . H 3 HOH B 29 1228 228 HOH HOH . H 3 HOH B 30 1229 229 HOH HOH . H 3 HOH B 31 1230 230 HOH HOH . H 3 HOH B 32 1232 232 HOH HOH . H 3 HOH B 33 1233 233 HOH HOH . H 3 HOH B 34 1234 234 HOH HOH . H 3 HOH B 35 1235 235 HOH HOH . H 3 HOH B 36 1236 236 HOH HOH . H 3 HOH B 37 1237 237 HOH HOH . H 3 HOH B 38 1238 238 HOH HOH . H 3 HOH B 39 1239 239 HOH HOH . H 3 HOH B 40 1240 240 HOH HOH . H 3 HOH B 41 1241 241 HOH HOH . H 3 HOH B 42 1242 242 HOH HOH . H 3 HOH B 43 1244 244 HOH HOH . H 3 HOH B 44 1245 245 HOH HOH . H 3 HOH B 45 1246 246 HOH HOH . H 3 HOH B 46 1247 247 HOH HOH . H 3 HOH B 47 1248 248 HOH HOH . H 3 HOH B 48 1249 249 HOH HOH . H 3 HOH B 49 1250 250 HOH HOH . H 3 HOH B 50 1251 251 HOH HOH . H 3 HOH B 51 1252 252 HOH HOH . H 3 HOH B 52 1253 253 HOH HOH . H 3 HOH B 53 1254 254 HOH HOH . H 3 HOH B 54 1255 255 HOH HOH . H 3 HOH B 55 1256 256 HOH HOH . H 3 HOH B 56 1257 257 HOH HOH . H 3 HOH B 57 1258 258 HOH HOH . H 3 HOH B 58 1259 259 HOH HOH . H 3 HOH B 59 1261 261 HOH HOH . H 3 HOH B 60 1262 262 HOH HOH . H 3 HOH B 61 1263 263 HOH HOH . H 3 HOH B 62 1264 264 HOH HOH . H 3 HOH B 63 1265 265 HOH HOH . H 3 HOH B 64 1266 266 HOH HOH . H 3 HOH B 65 1267 267 HOH HOH . H 3 HOH B 66 1268 268 HOH HOH . H 3 HOH B 67 1269 269 HOH HOH . H 3 HOH B 68 2230 230 HOH HOH . H 3 HOH B 69 2242 242 HOH HOH . H 3 HOH B 70 2251 251 HOH HOH . I 3 HOH C 1 214 214 HOH HOH . I 3 HOH C 2 216 216 HOH HOH . I 3 HOH C 3 224 224 HOH HOH . I 3 HOH C 4 255 255 HOH HOH . I 3 HOH C 5 256 256 HOH HOH . I 3 HOH C 6 1216 216 HOH HOH . I 3 HOH C 7 2201 201 HOH HOH . I 3 HOH C 8 2202 202 HOH HOH . I 3 HOH C 9 2203 203 HOH HOH . I 3 HOH C 10 2204 204 HOH HOH . I 3 HOH C 11 2205 205 HOH HOH . I 3 HOH C 12 2206 206 HOH HOH . I 3 HOH C 13 2207 207 HOH HOH . I 3 HOH C 14 2208 208 HOH HOH . I 3 HOH C 15 2209 209 HOH HOH . I 3 HOH C 16 2210 210 HOH HOH . I 3 HOH C 17 2211 211 HOH HOH . I 3 HOH C 18 2212 212 HOH HOH . I 3 HOH C 19 2213 213 HOH HOH . I 3 HOH C 20 2214 214 HOH HOH . I 3 HOH C 21 2215 215 HOH HOH . I 3 HOH C 22 2216 216 HOH HOH . I 3 HOH C 23 2217 217 HOH HOH . I 3 HOH C 24 2218 218 HOH HOH . I 3 HOH C 25 2219 219 HOH HOH . I 3 HOH C 26 2220 220 HOH HOH . I 3 HOH C 27 2221 221 HOH HOH . I 3 HOH C 28 2222 222 HOH HOH . I 3 HOH C 29 2223 223 HOH HOH . I 3 HOH C 30 2224 224 HOH HOH . I 3 HOH C 31 2225 225 HOH HOH . I 3 HOH C 32 2226 226 HOH HOH . I 3 HOH C 33 2227 227 HOH HOH . I 3 HOH C 34 2228 228 HOH HOH . I 3 HOH C 35 2229 229 HOH HOH . I 3 HOH C 36 2231 231 HOH HOH . I 3 HOH C 37 2232 232 HOH HOH . I 3 HOH C 38 2233 233 HOH HOH . I 3 HOH C 39 2234 234 HOH HOH . I 3 HOH C 40 2235 235 HOH HOH . I 3 HOH C 41 2236 236 HOH HOH . I 3 HOH C 42 2237 237 HOH HOH . I 3 HOH C 43 2238 238 HOH HOH . I 3 HOH C 44 2239 239 HOH HOH . I 3 HOH C 45 2240 240 HOH HOH . I 3 HOH C 46 2241 241 HOH HOH . I 3 HOH C 47 2243 243 HOH HOH . I 3 HOH C 48 2244 244 HOH HOH . I 3 HOH C 49 2245 245 HOH HOH . I 3 HOH C 50 2246 246 HOH HOH . I 3 HOH C 51 2247 247 HOH HOH . I 3 HOH C 52 2248 248 HOH HOH . I 3 HOH C 53 2249 249 HOH HOH . I 3 HOH C 54 2250 250 HOH HOH . I 3 HOH C 55 2252 252 HOH HOH . I 3 HOH C 56 2253 253 HOH HOH . I 3 HOH C 57 2254 254 HOH HOH . I 3 HOH C 58 2255 255 HOH HOH . I 3 HOH C 59 2256 256 HOH HOH . I 3 HOH C 60 2257 257 HOH HOH . I 3 HOH C 61 2258 258 HOH HOH . I 3 HOH C 62 2259 259 HOH HOH . I 3 HOH C 63 2260 260 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 1.647 _atom_site.Cartn_y 3.526 _atom_site.Cartn_z 94.108 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.06 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 500 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 1056 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 1 #