data_1G3Q
#
_model_server_result.job_id            oGkPtMpDM9v6rmcU4TfIGg 
_model_server_result.datetime_utc      '2025-03-05 02:39:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1g3q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":238}' 
#
_entry.id    1G3Q 
#
_exptl.entry_id    1G3Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1G3Q 
_cell.length_a            96.04 
_cell.length_b            96.04 
_cell.length_c            96.04 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1G3Q 
_symmetry.cell_setting             cubic 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 17 A THR 17 1_555 B MG MG . A MG 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc2 C O3B ADP . A ADP 238 1_555 B MG MG . A MG 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc3 B MG MG . A MG 239 1_555 D O HOH . A HOH 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc4 B MG MG . A MG 239 1_555 D O HOH . A HOH 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc5 B MG MG . A MG 239 1_555 D O HOH . A HOH 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc6 B MG MG . A MG 239 1_555 D O HOH . A HOH 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     1G3Q 
_atom_sites.fract_transf_matrix[1][1]    0.010412 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010412 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010412 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 239 239 MG MG . 
C 3 ADP A 1 238 238 ADP ADP . 
D 4 HOH A 1 240 1 HOH HOH . 
D 4 HOH A 2 241 2 HOH HOH . 
D 4 HOH A 3 242 3 HOH HOH . 
D 4 HOH A 4 243 4 HOH HOH . 
D 4 HOH A 5 244 5 HOH HOH . 
D 4 HOH A 6 245 6 HOH HOH . 
D 4 HOH A 7 246 7 HOH HOH . 
D 4 HOH A 8 247 8 HOH HOH . 
D 4 HOH A 9 248 9 HOH HOH . 
D 4 HOH A 10 249 10 HOH HOH . 
D 4 HOH A 11 250 11 HOH HOH . 
D 4 HOH A 12 251 12 HOH HOH . 
D 4 HOH A 13 252 13 HOH HOH . 
D 4 HOH A 14 253 14 HOH HOH . 
D 4 HOH A 15 254 15 HOH HOH . 
D 4 HOH A 16 255 16 HOH HOH . 
D 4 HOH A 17 256 17 HOH HOH . 
D 4 HOH A 18 257 18 HOH HOH . 
D 4 HOH A 19 258 19 HOH HOH . 
D 4 HOH A 20 259 20 HOH HOH . 
D 4 HOH A 21 260 21 HOH HOH . 
D 4 HOH A 22 261 22 HOH HOH . 
D 4 HOH A 23 262 23 HOH HOH . 
D 4 HOH A 24 263 24 HOH HOH . 
D 4 HOH A 25 264 25 HOH HOH . 
D 4 HOH A 26 265 26 HOH HOH . 
D 4 HOH A 27 266 27 HOH HOH . 
D 4 HOH A 28 267 28 HOH HOH . 
D 4 HOH A 29 268 29 HOH HOH . 
D 4 HOH A 30 269 30 HOH HOH . 
D 4 HOH A 31 270 31 HOH HOH . 
D 4 HOH A 32 271 32 HOH HOH . 
D 4 HOH A 33 272 33 HOH HOH . 
D 4 HOH A 34 273 34 HOH HOH . 
D 4 HOH A 35 274 35 HOH HOH . 
D 4 HOH A 36 275 36 HOH HOH . 
D 4 HOH A 37 276 37 HOH HOH . 
D 4 HOH A 38 277 38 HOH HOH . 
D 4 HOH A 39 278 39 HOH HOH . 
D 4 HOH A 40 279 40 HOH HOH . 
D 4 HOH A 41 280 41 HOH HOH . 
D 4 HOH A 42 281 42 HOH HOH . 
D 4 HOH A 43 282 43 HOH HOH . 
D 4 HOH A 44 283 44 HOH HOH . 
D 4 HOH A 45 284 45 HOH HOH . 
D 4 HOH A 46 285 46 HOH HOH . 
D 4 HOH A 47 286 47 HOH HOH . 
D 4 HOH A 48 287 48 HOH HOH . 
D 4 HOH A 49 288 49 HOH HOH . 
D 4 HOH A 50 289 50 HOH HOH . 
D 4 HOH A 51 290 51 HOH HOH . 
D 4 HOH A 52 291 52 HOH HOH . 
D 4 HOH A 53 292 53 HOH HOH . 
D 4 HOH A 54 293 54 HOH HOH . 
D 4 HOH A 55 294 55 HOH HOH . 
D 4 HOH A 56 295 56 HOH HOH . 
D 4 HOH A 57 296 57 HOH HOH . 
D 4 HOH A 58 297 58 HOH HOH . 
D 4 HOH A 59 298 59 HOH HOH . 
D 4 HOH A 60 299 60 HOH HOH . 
D 4 HOH A 61 300 61 HOH HOH . 
D 4 HOH A 62 301 62 HOH HOH . 
D 4 HOH A 63 302 63 HOH HOH . 
D 4 HOH A 64 303 64 HOH HOH . 
D 4 HOH A 65 304 65 HOH HOH . 
D 4 HOH A 66 305 66 HOH HOH . 
D 4 HOH A 67 306 67 HOH HOH . 
D 4 HOH A 68 307 68 HOH HOH . 
D 4 HOH A 69 308 69 HOH HOH . 
D 4 HOH A 70 309 70 HOH HOH . 
D 4 HOH A 71 310 71 HOH HOH . 
D 4 HOH A 72 311 72 HOH HOH . 
D 4 HOH A 73 312 73 HOH HOH . 
D 4 HOH A 74 313 74 HOH HOH . 
D 4 HOH A 75 314 75 HOH HOH . 
D 4 HOH A 76 315 76 HOH HOH . 
D 4 HOH A 77 316 77 HOH HOH . 
D 4 HOH A 78 317 78 HOH HOH . 
D 4 HOH A 79 318 79 HOH HOH . 
D 4 HOH A 80 319 80 HOH HOH . 
D 4 HOH A 81 320 81 HOH HOH . 
D 4 HOH A 82 321 82 HOH HOH . 
D 4 HOH A 83 322 83 HOH HOH . 
D 4 HOH A 84 323 84 HOH HOH . 
D 4 HOH A 85 324 85 HOH HOH . 
D 4 HOH A 86 325 86 HOH HOH . 
D 4 HOH A 87 326 87 HOH HOH . 
D 4 HOH A 88 327 88 HOH HOH . 
D 4 HOH A 89 328 89 HOH HOH . 
D 4 HOH A 90 329 90 HOH HOH . 
D 4 HOH A 91 330 91 HOH HOH . 
D 4 HOH A 92 331 92 HOH HOH . 
D 4 HOH A 93 332 93 HOH HOH . 
D 4 HOH A 94 333 94 HOH HOH . 
D 4 HOH A 95 334 95 HOH HOH . 
D 4 HOH A 96 335 96 HOH HOH . 
D 4 HOH A 97 336 97 HOH HOH . 
D 4 HOH A 98 337 98 HOH HOH . 
D 4 HOH A 99 338 99 HOH HOH . 
D 4 HOH A 100 339 100 HOH HOH . 
D 4 HOH A 101 340 101 HOH HOH . 
D 4 HOH A 102 341 102 HOH HOH . 
D 4 HOH A 103 342 103 HOH HOH . 
D 4 HOH A 104 343 104 HOH HOH . 
D 4 HOH A 105 344 105 HOH HOH . 
D 4 HOH A 106 345 106 HOH HOH . 
D 4 HOH A 107 346 107 HOH HOH . 
D 4 HOH A 108 347 108 HOH HOH . 
D 4 HOH A 109 348 109 HOH HOH . 
D 4 HOH A 110 349 110 HOH HOH . 
D 4 HOH A 111 350 111 HOH HOH . 
D 4 HOH A 112 351 112 HOH HOH . 
D 4 HOH A 113 352 113 HOH HOH . 
D 4 HOH A 114 353 114 HOH HOH . 
D 4 HOH A 115 354 115 HOH HOH . 
D 4 HOH A 116 355 116 HOH HOH . 
D 4 HOH A 117 356 117 HOH HOH . 
D 4 HOH A 118 357 118 HOH HOH . 
D 4 HOH A 119 358 119 HOH HOH . 
D 4 HOH A 120 359 120 HOH HOH . 
D 4 HOH A 121 360 121 HOH HOH . 
D 4 HOH A 122 361 122 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 3 33.359 56.687 52.187 1 18.51 ? PB ADP 238 A 1 
HETATM 2 O O1B ADP . . . C 3 34.547 56.985 51.414 1 18.62 ? O1B ADP 238 A 1 
HETATM 3 O O2B ADP . . . C 3 32.876 55.336 51.861 1 17.61 ? O2B ADP 238 A 1 
HETATM 4 O O3B ADP . . . C 3 33.481 56.862 53.83 1 17.2 ? O3B ADP 238 A 1 
HETATM 5 P PA ADP . . . C 3 31.505 58.81 52.439 1 18.69 ? PA ADP 238 A 1 
HETATM 6 O O1A ADP . . . C 3 32.341 59.907 52.784 1 17.45 ? O1A ADP 238 A 1 
HETATM 7 O O2A ADP . . . C 3 30.72 58.313 53.538 1 18.14 ? O2A ADP 238 A 1 
HETATM 8 O O3A ADP . . . C 3 32.237 57.666 51.763 1 18.24 ? O3A ADP 238 A 1 
HETATM 9 O O5' ADP . . . C 3 30.561 59.324 51.388 1 17.7 ? O5' ADP 238 A 1 
HETATM 10 C C5' ADP . . . C 3 31.004 59.919 50.108 1 18.36 ? C5' ADP 238 A 1 
HETATM 11 C C4' ADP . . . C 3 30.195 61.11 49.74 1 18.67 ? C4' ADP 238 A 1 
HETATM 12 O O4' ADP . . . C 3 28.868 60.734 49.272 1 19.06 ? O4' ADP 238 A 1 
HETATM 13 C C3' ADP . . . C 3 29.933 62.068 50.859 1 19.08 ? C3' ADP 238 A 1 
HETATM 14 O O3' ADP . . . C 3 30.153 63.409 50.429 1 19.96 ? O3' ADP 238 A 1 
HETATM 15 C C2' ADP . . . C 3 28.498 61.894 51.254 1 18.91 ? C2' ADP 238 A 1 
HETATM 16 O O2' ADP . . . C 3 27.837 63.063 51.733 1 18.49 ? O2' ADP 238 A 1 
HETATM 17 C C1' ADP . . . C 3 27.829 61.395 50.045 1 18.98 ? C1' ADP 238 A 1 
HETATM 18 N N9 ADP . . . C 3 26.813 60.337 50.302 1 18.66 ? N9 ADP 238 A 1 
HETATM 19 C C8 ADP . . . C 3 26.884 59.09 50.943 1 18.53 ? C8 ADP 238 A 1 
HETATM 20 N N7 ADP . . . C 3 25.773 58.413 50.986 1 18.53 ? N7 ADP 238 A 1 
HETATM 21 C C5 ADP . . . C 3 24.88 59.236 50.338 1 18.56 ? C5 ADP 238 A 1 
HETATM 22 C C6 ADP . . . C 3 23.494 59.101 50.041 1 18.87 ? C6 ADP 238 A 1 
HETATM 23 N N6 ADP . . . C 3 22.838 58.003 50.418 1 18.65 ? N6 ADP 238 A 1 
HETATM 24 N N1 ADP . . . C 3 22.859 60.139 49.355 1 18.76 ? N1 ADP 238 A 1 
HETATM 25 C C2 ADP . . . C 3 23.555 61.256 48.98 1 19.29 ? C2 ADP 238 A 1 
HETATM 26 N N3 ADP . . . C 3 24.872 61.465 49.223 1 18.62 ? N3 ADP 238 A 1 
HETATM 27 C C4 ADP . . . C 3 25.484 60.421 49.906 1 18.86 ? C4 ADP 238 A 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           771 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#