data_1G41 # _model_server_result.job_id Bs1ELk1ChF8s049OxdLFUw _model_server_result.datetime_utc '2025-02-27 18:50:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g41 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":450}' # _entry.id 1G41 # _exptl.entry_id 1G41 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1G41 _cell.length_a 110.62 _cell.length_b 110.62 _cell.length_c 335.83 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G41 _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 6 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 y,-x+y,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 0 6 'crystal symmetry operation' 6_555 x-y,x,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1G41 _atom_sites.fract_transf_matrix[1][1] 0.00904 _atom_sites.fract_transf_matrix[1][2] 0.005219 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010438 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 600 600 SO4 SO4 . C 3 ADP A 1 450 450 ADP ADP . D 4 HOH A 1 451 451 HOH WAT . D 4 HOH A 2 452 452 HOH WAT . D 4 HOH A 3 453 453 HOH WAT . D 4 HOH A 4 454 454 HOH WAT . D 4 HOH A 5 455 455 HOH WAT . D 4 HOH A 6 456 456 HOH WAT . D 4 HOH A 7 457 457 HOH WAT . D 4 HOH A 8 458 458 HOH WAT . D 4 HOH A 9 459 459 HOH WAT . D 4 HOH A 10 460 460 HOH WAT . D 4 HOH A 11 461 461 HOH WAT . D 4 HOH A 12 462 462 HOH WAT . D 4 HOH A 13 463 463 HOH WAT . D 4 HOH A 14 464 464 HOH WAT . D 4 HOH A 15 465 465 HOH WAT . D 4 HOH A 16 466 466 HOH WAT . D 4 HOH A 17 467 467 HOH WAT . D 4 HOH A 18 468 468 HOH WAT . D 4 HOH A 19 469 469 HOH WAT . D 4 HOH A 20 470 470 HOH WAT . D 4 HOH A 21 471 471 HOH WAT . D 4 HOH A 22 472 472 HOH WAT . D 4 HOH A 23 473 473 HOH WAT . D 4 HOH A 24 474 474 HOH WAT . D 4 HOH A 25 475 475 HOH WAT . D 4 HOH A 26 476 476 HOH WAT . D 4 HOH A 27 477 477 HOH WAT . D 4 HOH A 28 478 478 HOH WAT . D 4 HOH A 29 480 480 HOH WAT . D 4 HOH A 30 481 481 HOH WAT . D 4 HOH A 31 482 482 HOH WAT . D 4 HOH A 32 483 483 HOH WAT . D 4 HOH A 33 484 484 HOH WAT . D 4 HOH A 34 485 485 HOH WAT . D 4 HOH A 35 486 486 HOH WAT . D 4 HOH A 36 487 487 HOH WAT . D 4 HOH A 37 488 488 HOH WAT . D 4 HOH A 38 489 489 HOH WAT . D 4 HOH A 39 490 490 HOH WAT . D 4 HOH A 40 491 491 HOH WAT . D 4 HOH A 41 492 492 HOH WAT . D 4 HOH A 42 493 493 HOH WAT . D 4 HOH A 43 494 494 HOH WAT . D 4 HOH A 44 495 495 HOH WAT . D 4 HOH A 45 496 496 HOH WAT . D 4 HOH A 46 497 497 HOH WAT . D 4 HOH A 47 498 498 HOH WAT . D 4 HOH A 48 499 499 HOH WAT . D 4 HOH A 49 500 500 HOH WAT . D 4 HOH A 50 501 501 HOH WAT . D 4 HOH A 51 502 502 HOH WAT . D 4 HOH A 52 503 503 HOH WAT . D 4 HOH A 53 504 504 HOH WAT . D 4 HOH A 54 505 505 HOH WAT . D 4 HOH A 55 506 506 HOH WAT . D 4 HOH A 56 507 507 HOH WAT . D 4 HOH A 57 508 508 HOH WAT . D 4 HOH A 58 509 509 HOH WAT . D 4 HOH A 59 510 510 HOH WAT . D 4 HOH A 60 511 511 HOH WAT . D 4 HOH A 61 512 512 HOH WAT . D 4 HOH A 62 513 513 HOH WAT . D 4 HOH A 63 514 514 HOH WAT . D 4 HOH A 64 515 515 HOH WAT . D 4 HOH A 65 516 516 HOH WAT . D 4 HOH A 66 517 517 HOH WAT . D 4 HOH A 67 518 518 HOH WAT . D 4 HOH A 68 519 519 HOH WAT . D 4 HOH A 69 520 520 HOH WAT . D 4 HOH A 70 521 521 HOH WAT . D 4 HOH A 71 522 522 HOH WAT . D 4 HOH A 72 523 523 HOH WAT . D 4 HOH A 73 525 525 HOH WAT . D 4 HOH A 74 526 526 HOH WAT . D 4 HOH A 75 527 527 HOH WAT . D 4 HOH A 76 528 528 HOH WAT . D 4 HOH A 77 529 529 HOH WAT . D 4 HOH A 78 530 530 HOH WAT . D 4 HOH A 79 531 531 HOH WAT . D 4 HOH A 80 532 532 HOH WAT . D 4 HOH A 81 534 534 HOH WAT . D 4 HOH A 82 535 535 HOH WAT . D 4 HOH A 83 536 536 HOH WAT . D 4 HOH A 84 537 537 HOH WAT . D 4 HOH A 85 538 538 HOH WAT . D 4 HOH A 86 539 539 HOH WAT . D 4 HOH A 87 540 540 HOH WAT . D 4 HOH A 88 541 541 HOH WAT . D 4 HOH A 89 542 542 HOH WAT . D 4 HOH A 90 543 543 HOH WAT . D 4 HOH A 91 544 544 HOH WAT . D 4 HOH A 92 545 545 HOH WAT . D 4 HOH A 93 546 546 HOH WAT . D 4 HOH A 94 547 547 HOH WAT . D 4 HOH A 95 548 548 HOH WAT . D 4 HOH A 96 549 549 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 3 25.057 22.366 17.808 1 51.98 ? PB ADP 450 A 1 HETATM 2 O O1B ADP . . . C 3 25.606 20.984 17.546 1 63.96 ? O1B ADP 450 A 1 HETATM 3 O O2B ADP . . . C 3 23.673 22.276 18.513 1 50.66 ? O2B ADP 450 A 1 HETATM 4 O O3B ADP . . . C 3 25.045 23.223 16.605 1 53.51 ? O3B ADP 450 A 1 HETATM 5 P PA ADP . . . C 3 26.554 22.444 20.326 1 40.5 ? PA ADP 450 A 1 HETATM 6 O O1A ADP . . . C 3 27.257 23.528 21.007 1 38.81 ? O1A ADP 450 A 1 HETATM 7 O O2A ADP . . . C 3 25.398 21.783 20.97 1 41.24 ? O2A ADP 450 A 1 HETATM 8 O O3A ADP . . . C 3 25.948 23.012 18.918 1 46.54 ? O3A ADP 450 A 1 HETATM 9 O O5' ADP . . . C 3 27.573 21.272 19.952 1 34.5 ? O5' ADP 450 A 1 HETATM 10 C C5' ADP . . . C 3 28.843 21.562 19.34 1 33.1 ? C5' ADP 450 A 1 HETATM 11 C C4' ADP . . . C 3 30.064 21.151 20.177 1 32.41 ? C4' ADP 450 A 1 HETATM 12 O O4' ADP . . . C 3 31.183 21.974 19.649 1 31.34 ? O4' ADP 450 A 1 HETATM 13 C C3' ADP . . . C 3 30.036 21.456 21.69 1 32.82 ? C3' ADP 450 A 1 HETATM 14 O O3' ADP . . . C 3 30.652 20.377 22.428 1 30.06 ? O3' ADP 450 A 1 HETATM 15 C C2' ADP . . . C 3 30.937 22.745 21.908 1 33.4 ? C2' ADP 450 A 1 HETATM 16 O O2' ADP . . . C 3 31.919 22.581 22.973 1 36.52 ? O2' ADP 450 A 1 HETATM 17 C C1' ADP . . . C 3 31.706 22.919 20.579 1 31.57 ? C1' ADP 450 A 1 HETATM 18 N N9 ADP . . . C 3 31.392 24.321 19.996 1 30.79 ? N9 ADP 450 A 1 HETATM 19 C C8 ADP . . . C 3 30.641 24.585 18.929 1 31.25 ? C8 ADP 450 A 1 HETATM 20 N N7 ADP . . . C 3 30.538 25.827 18.683 1 30.3 ? N7 ADP 450 A 1 HETATM 21 C C5 ADP . . . C 3 31.275 26.458 19.669 1 30.48 ? C5 ADP 450 A 1 HETATM 22 C C6 ADP . . . C 3 31.574 27.836 19.972 1 30.87 ? C6 ADP 450 A 1 HETATM 23 N N6 ADP . . . C 3 31.105 28.875 19.21 1 32.58 ? N6 ADP 450 A 1 HETATM 24 N N1 ADP . . . C 3 32.36 28.096 21.061 1 32.1 ? N1 ADP 450 A 1 HETATM 25 C C2 ADP . . . C 3 32.818 27.084 21.802 1 32.63 ? C2 ADP 450 A 1 HETATM 26 N N3 ADP . . . C 3 32.59 25.777 21.592 1 31.03 ? N3 ADP 450 A 1 HETATM 27 C C4 ADP . . . C 3 31.81 25.527 20.507 1 30.66 ? C4 ADP 450 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #