data_1G4P # _model_server_result.job_id bLkLQ5zjpzF1o3kO0B_rIQ _model_server_result.datetime_utc '2024-12-05 01:05:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g4p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2001}' # _entry.id 1G4P # _exptl.entry_id 1G4P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 353.086 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-AMINO-2-TRIFLUOROMETHYL-5-HYDROXYMETHYLPYRIMIDINE PYROPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1G4P _cell.length_a 76.28 _cell.length_b 76.28 _cell.length_c 139.59 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G4P _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 84 A ASP 93 1_555 C MG MG . A MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc2 A OD2 ASP 103 A ASP 112 1_555 C MG MG . A MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc3 D O2 FQP . A FQP 2001 1_555 C MG MG . A MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc4 D O FQP . A FQP 2001 1_555 C MG MG . A MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.047 ? metalc ? metalc5 D O5 FQP . A FQP 2001 1_555 C MG MG . A MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc6 C MG MG . A MG 2003 1_555 G O HOH . A HOH 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc7 C MG MG . A MG 2003 1_555 G O HOH . A HOH 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc8 B OD1 ASP 84 B ASP 1093 1_555 E MG MG . B MG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc9 B OD1 ASP 103 B ASP 1112 1_555 E MG MG . B MG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc10 F O2 FQP . B FQP 2002 1_555 E MG MG . B MG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc11 F O5 FQP . B FQP 2002 1_555 E MG MG . B MG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc12 E MG MG . B MG 2004 1_555 H O HOH . B HOH 2201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc13 E MG MG . B MG 2004 1_555 H O HOH . B HOH 2202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? # _chem_comp.formula 'C6 H8 F3 N3 O7 P2' _chem_comp.formula_weight 353.086 _chem_comp.id FQP _chem_comp.mon_nstd_flag . _chem_comp.name '4-AMINO-2-TRIFLUOROMETHYL-5-HYDROXYMETHYLPYRIMIDINE PYROPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A FQP doub 83 n y N1A C6A FQP sing 84 n y C2A CM2 FQP sing 85 n n C2A N3A FQP sing 86 n y CM2 F1 FQP sing 87 n n CM2 F2 FQP sing 88 n n CM2 F3 FQP sing 89 n n N3A C4A FQP doub 90 n y C4A N4A FQP sing 91 n n C4A C5A FQP sing 92 n y N4A H4A1 FQP sing 93 n n N4A H4A2 FQP sing 94 n n C5A C6A FQP doub 95 n y C5A C7A FQP sing 96 n n C6A H6A1 FQP sing 97 n n C7A O1 FQP sing 98 n n C7A H7A1 FQP sing 99 n n C7A H7A2 FQP sing 100 n n O2 P1 FQP sing 101 n n O2 HO21 FQP sing 102 n n P1 O1 FQP sing 103 n n P1 O3 FQP doub 104 n n P1 O FQP sing 105 n n O P2 FQP sing 106 n n P2 O4 FQP doub 107 n n P2 O5 FQP sing 108 n n P2 O6 FQP sing 109 n n O5 HO51 FQP sing 110 n n O6 HO61 FQP sing 111 n n # _atom_sites.entry_id 1G4P _atom_sites.fract_transf_matrix[1][1] 0.01311 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 2003 2003 MG MG . D 3 FQP A 1 2001 2001 FQP FQP . E 2 MG B 1 2004 2004 MG MG . F 3 FQP B 1 2002 2002 FQP FQP . G 4 HOH A 1 2101 2101 HOH HOH . G 4 HOH A 2 2102 2102 HOH HOH . G 4 HOH A 3 2103 2103 HOH HOH . G 4 HOH A 4 2105 2105 HOH HOH . G 4 HOH A 5 2107 2107 HOH HOH . G 4 HOH A 6 2110 2110 HOH HOH . G 4 HOH A 7 2114 2114 HOH HOH . G 4 HOH A 8 2115 2115 HOH HOH . G 4 HOH A 9 2301 2301 HOH HOH . G 4 HOH A 10 2302 2302 HOH HOH . G 4 HOH A 11 2303 2303 HOH HOH . G 4 HOH A 12 3004 3004 HOH HOH . G 4 HOH A 13 3010 3010 HOH HOH . G 4 HOH A 14 3012 3012 HOH HOH . G 4 HOH A 15 3013 3013 HOH HOH . G 4 HOH A 16 3014 3014 HOH HOH . G 4 HOH A 17 3018 3018 HOH HOH . G 4 HOH A 18 3019 3019 HOH HOH . G 4 HOH A 19 3020 3020 HOH HOH . G 4 HOH A 20 3022 3022 HOH HOH . G 4 HOH A 21 3026 3026 HOH HOH . G 4 HOH A 22 3029 3029 HOH HOH . G 4 HOH A 23 3030 3030 HOH HOH . G 4 HOH A 24 3032 3032 HOH HOH . G 4 HOH A 25 3034 3034 HOH HOH . G 4 HOH A 26 3036 3036 HOH HOH . G 4 HOH A 27 3037 3037 HOH HOH . G 4 HOH A 28 3039 3039 HOH HOH . G 4 HOH A 29 3041 3041 HOH HOH . G 4 HOH A 30 3044 3044 HOH HOH . G 4 HOH A 31 3048 3048 HOH HOH . G 4 HOH A 32 3050 3050 HOH HOH . G 4 HOH A 33 3053 3053 HOH HOH . G 4 HOH A 34 3055 3055 HOH HOH . G 4 HOH A 35 3057 3057 HOH HOH . G 4 HOH A 36 3061 3061 HOH HOH . G 4 HOH A 37 3062 3062 HOH HOH . G 4 HOH A 38 3064 3064 HOH HOH . G 4 HOH A 39 3065 3065 HOH HOH . G 4 HOH A 40 3066 3066 HOH HOH . G 4 HOH A 41 3068 3068 HOH HOH . G 4 HOH A 42 3071 3071 HOH HOH . G 4 HOH A 43 3079 3079 HOH HOH . G 4 HOH A 44 3085 3085 HOH HOH . G 4 HOH A 45 3086 3086 HOH HOH . G 4 HOH A 46 3092 3092 HOH HOH . G 4 HOH A 47 3094 3094 HOH HOH . G 4 HOH A 48 3096 3096 HOH HOH . G 4 HOH A 49 3099 3099 HOH HOH . G 4 HOH A 50 3101 3101 HOH HOH . G 4 HOH A 51 3102 3102 HOH HOH . G 4 HOH A 52 3104 3104 HOH HOH . G 4 HOH A 53 3105 3105 HOH HOH . G 4 HOH A 54 3106 3106 HOH HOH . G 4 HOH A 55 3107 3107 HOH HOH . G 4 HOH A 56 3108 3108 HOH HOH . G 4 HOH A 57 3112 3112 HOH HOH . G 4 HOH A 58 3114 3114 HOH HOH . G 4 HOH A 59 3115 3115 HOH HOH . G 4 HOH A 60 3116 3116 HOH HOH . G 4 HOH A 61 3117 3117 HOH HOH . G 4 HOH A 62 3118 3118 HOH HOH . G 4 HOH A 63 3121 3121 HOH HOH . G 4 HOH A 64 3122 3122 HOH HOH . G 4 HOH A 65 3125 3125 HOH HOH . G 4 HOH A 66 3126 3126 HOH HOH . G 4 HOH A 67 3129 3129 HOH HOH . G 4 HOH A 68 3131 3131 HOH HOH . G 4 HOH A 69 3134 3134 HOH HOH . G 4 HOH A 70 3135 3135 HOH HOH . G 4 HOH A 71 3137 3137 HOH HOH . G 4 HOH A 72 3139 3139 HOH HOH . G 4 HOH A 73 3140 3140 HOH HOH . G 4 HOH A 74 3143 3143 HOH HOH . G 4 HOH A 75 3146 3146 HOH HOH . G 4 HOH A 76 3147 3147 HOH HOH . G 4 HOH A 77 3149 3149 HOH HOH . G 4 HOH A 78 3153 3153 HOH HOH . G 4 HOH A 79 3158 3158 HOH HOH . G 4 HOH A 80 3159 3159 HOH HOH . G 4 HOH A 81 3161 3161 HOH HOH . G 4 HOH A 82 3169 3169 HOH HOH . H 4 HOH B 1 2201 2201 HOH HOH . H 4 HOH B 2 2202 2202 HOH HOH . H 4 HOH B 3 2205 2205 HOH HOH . H 4 HOH B 4 2210 2210 HOH HOH . H 4 HOH B 5 2215 2215 HOH HOH . H 4 HOH B 6 2216 2216 HOH HOH . H 4 HOH B 7 2401 2401 HOH HOH . H 4 HOH B 8 2402 2402 HOH HOH . H 4 HOH B 9 3002 3002 HOH HOH . H 4 HOH B 10 3003 3003 HOH HOH . H 4 HOH B 11 3005 3005 HOH HOH . H 4 HOH B 12 3006 3006 HOH HOH . H 4 HOH B 13 3007 3007 HOH HOH . H 4 HOH B 14 3008 3008 HOH HOH . H 4 HOH B 15 3009 3009 HOH HOH . H 4 HOH B 16 3011 3011 HOH HOH . H 4 HOH B 17 3015 3015 HOH HOH . H 4 HOH B 18 3016 3016 HOH HOH . H 4 HOH B 19 3017 3017 HOH HOH . H 4 HOH B 20 3023 3023 HOH HOH . H 4 HOH B 21 3024 3024 HOH HOH . H 4 HOH B 22 3025 3025 HOH HOH . H 4 HOH B 23 3027 3027 HOH HOH . H 4 HOH B 24 3033 3033 HOH HOH . H 4 HOH B 25 3040 3040 HOH HOH . H 4 HOH B 26 3042 3042 HOH HOH . H 4 HOH B 27 3043 3043 HOH HOH . H 4 HOH B 28 3046 3046 HOH HOH . H 4 HOH B 29 3049 3049 HOH HOH . H 4 HOH B 30 3051 3051 HOH HOH . H 4 HOH B 31 3052 3052 HOH HOH . H 4 HOH B 32 3054 3054 HOH HOH . H 4 HOH B 33 3056 3056 HOH HOH . H 4 HOH B 34 3058 3058 HOH HOH . H 4 HOH B 35 3060 3060 HOH HOH . H 4 HOH B 36 3063 3063 HOH HOH . H 4 HOH B 37 3067 3067 HOH HOH . H 4 HOH B 38 3069 3069 HOH HOH . H 4 HOH B 39 3070 3070 HOH HOH . H 4 HOH B 40 3072 3072 HOH HOH . H 4 HOH B 41 3073 3073 HOH HOH . H 4 HOH B 42 3074 3074 HOH HOH . H 4 HOH B 43 3075 3075 HOH HOH . H 4 HOH B 44 3076 3076 HOH HOH . H 4 HOH B 45 3077 3077 HOH HOH . H 4 HOH B 46 3078 3078 HOH HOH . H 4 HOH B 47 3080 3080 HOH HOH . H 4 HOH B 48 3081 3081 HOH HOH . H 4 HOH B 49 3082 3082 HOH HOH . H 4 HOH B 50 3083 3083 HOH HOH . H 4 HOH B 51 3084 3084 HOH HOH . H 4 HOH B 52 3087 3087 HOH HOH . H 4 HOH B 53 3089 3089 HOH HOH . H 4 HOH B 54 3090 3090 HOH HOH . H 4 HOH B 55 3091 3091 HOH HOH . H 4 HOH B 56 3093 3093 HOH HOH . H 4 HOH B 57 3095 3095 HOH HOH . H 4 HOH B 58 3097 3097 HOH HOH . H 4 HOH B 59 3098 3098 HOH HOH . H 4 HOH B 60 3100 3100 HOH HOH . H 4 HOH B 61 3103 3103 HOH HOH . H 4 HOH B 62 3109 3109 HOH HOH . H 4 HOH B 63 3110 3110 HOH HOH . H 4 HOH B 64 3111 3111 HOH HOH . H 4 HOH B 65 3119 3119 HOH HOH . H 4 HOH B 66 3120 3120 HOH HOH . H 4 HOH B 67 3123 3123 HOH HOH . H 4 HOH B 68 3127 3127 HOH HOH . H 4 HOH B 69 3128 3128 HOH HOH . H 4 HOH B 70 3130 3130 HOH HOH . H 4 HOH B 71 3132 3132 HOH HOH . H 4 HOH B 72 3133 3133 HOH HOH . H 4 HOH B 73 3136 3136 HOH HOH . H 4 HOH B 74 3138 3138 HOH HOH . H 4 HOH B 75 3141 3141 HOH HOH . H 4 HOH B 76 3142 3142 HOH HOH . H 4 HOH B 77 3144 3144 HOH HOH . H 4 HOH B 78 3145 3145 HOH HOH . H 4 HOH B 79 3150 3150 HOH HOH . H 4 HOH B 80 3151 3151 HOH HOH . H 4 HOH B 81 3152 3152 HOH HOH . H 4 HOH B 82 3154 3154 HOH HOH . H 4 HOH B 83 3155 3155 HOH HOH . H 4 HOH B 84 3156 3156 HOH HOH . H 4 HOH B 85 3157 3157 HOH HOH . H 4 HOH B 86 3160 3160 HOH HOH . H 4 HOH B 87 3162 3162 HOH HOH . H 4 HOH B 88 3163 3163 HOH HOH . H 4 HOH B 89 3164 3164 HOH HOH . H 4 HOH B 90 3165 3165 HOH HOH . H 4 HOH B 91 3166 3166 HOH HOH . H 4 HOH B 92 3168 3168 HOH HOH . H 4 HOH B 93 3170 3170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A FQP . . . D 3 15.302 41.391 14.77 1 5.64 ? N1A FQP 2001 A 1 HETATM 2 C C2A FQP . . . D 3 16.389 41.067 15.543 1 5.11 ? C2A FQP 2001 A 1 HETATM 3 C CM2 FQP . . . D 3 16.861 39.684 15.509 1 6.27 ? CM2 FQP 2001 A 1 HETATM 4 N N3A FQP . . . D 3 17.005 41.953 16.295 1 2.35 ? N3A FQP 2001 A 1 HETATM 5 C C4A FQP . . . D 3 16.536 43.255 16.304 1 2.93 ? C4A FQP 2001 A 1 HETATM 6 N N4A FQP . . . D 3 17.195 44.101 17.079 1 2.35 ? N4A FQP 2001 A 1 HETATM 7 C C5A FQP . . . D 3 15.384 43.654 15.5 1 4.22 ? C5A FQP 2001 A 1 HETATM 8 C C6A FQP . . . D 3 14.809 42.664 14.752 1 4.8 ? C6A FQP 2001 A 1 HETATM 9 C C7A FQP . . . D 3 14.825 45.055 15.469 1 3.87 ? C7A FQP 2001 A 1 HETATM 10 O O2 FQP . . . D 3 16.678 47.892 14.002 1 10.88 ? O2 FQP 2001 A 1 HETATM 11 P P1 FQP . . . D 3 15.539 47.465 14.833 1 6.86 ? P1 FQP 2001 A 1 HETATM 12 O O1 FQP . . . D 3 15.81 45.919 14.867 1 5.98 ? O1 FQP 2001 A 1 HETATM 13 O O3 FQP . . . D 3 14.216 47.872 14.343 1 11.95 ? O3 FQP 2001 A 1 HETATM 14 O O FQP . . . D 3 15.649 48.075 16.299 1 9.08 ? O FQP 2001 A 1 HETATM 15 P P2 FQP . . . D 3 16.536 47.846 17.561 1 10.38 ? P2 FQP 2001 A 1 HETATM 16 O O4 FQP . . . D 3 16.193 46.493 17.967 1 9.24 ? O4 FQP 2001 A 1 HETATM 17 O O5 FQP . . . D 3 17.934 48.016 17.124 1 12 ? O5 FQP 2001 A 1 HETATM 18 O O6 FQP . . . D 3 16.009 48.899 18.463 1 11.04 ? O6 FQP 2001 A 1 HETATM 19 F F1 FQP . . . D 3 16.231 38.937 16.39 1 8.27 ? F1 FQP 2001 A 1 HETATM 20 F F2 FQP . . . D 3 18.143 39.635 15.782 1 9.33 ? F2 FQP 2001 A 1 HETATM 21 F F3 FQP . . . D 3 16.65 39.165 14.318 1 6.18 ? F3 FQP 2001 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 474 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #