data_1G5G # _model_server_result.job_id EzU493gm4EX3AJp_4pzJHg _model_server_result.datetime_utc '2025-02-28 20:00:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g5g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":4471}' # _entry.id 1G5G # _exptl.entry_id 1G5G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1G5G _cell.length_a 134.39 _cell.length_b 308.33 _cell.length_c 243 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G5G _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,O 1 1 D,E,F,L,M,N,P,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n G NAG 1 G 1 NAG A 851 NAG 2 n G NAG 2 G 2 NAG A 852 NAG 3 n H NAG 1 H 1 NAG A 4471 NAG 3 n H NAG 2 H 2 NAG A 4472 NAG 3 n H BMA 3 H 3 BMA A 4473 MAN 2 n I NAG 1 I 1 NAG B 851 NAG 2 n I NAG 2 I 2 NAG B 852 NAG 2 n J NAG 1 J 1 NAG B 1911 NAG 2 n J NAG 2 J 2 NAG B 1912 NAG 2 n K NAG 1 K 1 NAG C 851 NAG 2 n K NAG 2 K 2 NAG C 852 NAG 2 n L NAG 1 L 1 NAG D 851 NAG 2 n L NAG 2 L 2 NAG D 852 NAG 2 n M NAG 1 M 1 NAG E 851 NAG 2 n M NAG 2 M 2 NAG E 852 NAG 2 n N NAG 1 N 1 NAG F 851 NAG 2 n N NAG 2 N 2 NAG F 852 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 45 A CYS 76 1_555 A SG CYS 168 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 307 A CYS 338 1_555 A SG CYS 316 A CYS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf3 A SG CYS 331 A CYS 362 1_555 A SG CYS 339 A CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 363 A CYS 394 1_555 A SG CYS 368 A CYS 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 370 A CYS 401 1_555 A SG CYS 393 A CYS 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 B SG CYS 45 B CYS 76 1_555 B SG CYS 168 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 B SG CYS 307 B CYS 338 1_555 B SG CYS 316 B CYS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf8 B SG CYS 331 B CYS 362 1_555 B SG CYS 339 B CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf9 B SG CYS 363 B CYS 394 1_555 B SG CYS 368 B CYS 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 B SG CYS 370 B CYS 401 1_555 B SG CYS 393 B CYS 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf11 C SG CYS 45 C CYS 76 1_555 C SG CYS 168 C CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 C SG CYS 307 C CYS 338 1_555 C SG CYS 316 C CYS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf13 C SG CYS 331 C CYS 362 1_555 C SG CYS 339 C CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf14 C SG CYS 363 C CYS 394 1_555 C SG CYS 368 C CYS 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf15 C SG CYS 370 C CYS 401 1_555 C SG CYS 393 C CYS 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf16 D SG CYS 45 D CYS 76 1_555 D SG CYS 168 D CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf17 D SG CYS 307 D CYS 338 1_555 D SG CYS 316 D CYS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf18 D SG CYS 331 D CYS 362 1_555 D SG CYS 339 D CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf19 D SG CYS 363 D CYS 394 1_555 D SG CYS 368 D CYS 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf20 D SG CYS 370 D CYS 401 1_555 D SG CYS 393 D CYS 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf21 E SG CYS 45 E CYS 76 1_555 E SG CYS 168 E CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf22 E SG CYS 307 E CYS 338 1_555 E SG CYS 316 E CYS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf23 E SG CYS 331 E CYS 362 1_555 E SG CYS 339 E CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf24 E SG CYS 363 E CYS 394 1_555 E SG CYS 368 E CYS 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf25 E SG CYS 370 E CYS 401 1_555 E SG CYS 393 E CYS 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf26 F SG CYS 45 F CYS 76 1_555 F SG CYS 168 F CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf27 F SG CYS 307 F CYS 338 1_555 F SG CYS 316 F CYS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf28 F SG CYS 331 F CYS 362 1_555 F SG CYS 339 F CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf29 F SG CYS 363 F CYS 394 1_555 F SG CYS 368 F CYS 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf30 F SG CYS 370 F CYS 401 1_555 F SG CYS 393 F CYS 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 54 A ASN 85 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 A ND2 ASN 416 A ASN 447 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale3 B ND2 ASN 54 B ASN 85 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 B ND2 ASN 160 B ASN 191 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale5 C ND2 ASN 54 C ASN 85 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 C ND2 ASN 416 C ASN 447 1_555 O C1 NAG . C NAG 4471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale7 D ND2 ASN 54 D ASN 85 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 D ND2 ASN 160 D ASN 191 1_555 P C1 NAG . D NAG 1911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale9 E ND2 ASN 54 E ASN 85 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale10 E ND2 ASN 416 E ASN 447 1_555 Q C1 NAG . E NAG 4471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale11 F ND2 ASN 54 F ASN 85 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale12 F ND2 ASN 160 F ASN 191 1_555 R C1 NAG . F NAG 1911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale13 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale14 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale15 H O4 NAG . H NAG 2 1_555 H C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale16 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale17 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale18 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? covale ? covale19 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? covale ? covale20 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 ? covale ? covale21 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 259 n n C1 O1 NAG sing 260 n n C1 O5 NAG sing 261 n n C1 H1 NAG sing 262 n n C2 C3 NAG sing 263 n n C2 N2 NAG sing 264 n n C2 H2 NAG sing 265 n n C3 C4 NAG sing 266 n n C3 O3 NAG sing 267 n n C3 H3 NAG sing 268 n n C4 C5 NAG sing 269 n n C4 O4 NAG sing 270 n n C4 H4 NAG sing 271 n n C5 C6 NAG sing 272 n n C5 O5 NAG sing 273 n n C5 H5 NAG sing 274 n n C6 O6 NAG sing 275 n n C6 H61 NAG sing 276 n n C6 H62 NAG sing 277 n n C7 C8 NAG sing 278 n n C7 N2 NAG sing 279 n n C7 O7 NAG doub 280 n n C8 H81 NAG sing 281 n n C8 H82 NAG sing 282 n n C8 H83 NAG sing 283 n n N2 HN2 NAG sing 284 n n O1 HO1 NAG sing 285 n n O3 HO3 NAG sing 286 n n O4 HO4 NAG sing 287 n n O6 HO6 NAG sing 288 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1G5G _atom_sites.fract_transf_matrix[1][1] 0.007441 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003243 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004115 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 4 NAG C 1 4471 4471 NAG NAG . P 4 NAG D 1 1911 1911 NAG NAG . Q 4 NAG E 1 4471 4471 NAG NAG . R 4 NAG F 1 1911 1911 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . Q 4 128.197 51.969 48.2 1 85.81 ? C1 NAG 4471 E 1 HETATM 2 C C2 NAG . . . Q 4 127.158 52.372 47.124 1 91.44 ? C2 NAG 4471 E 1 HETATM 3 C C3 NAG . . . Q 4 126.9 53.894 47.097 1 90.81 ? C3 NAG 4471 E 1 HETATM 4 C C4 NAG . . . Q 4 126.636 54.412 48.503 1 90.1 ? C4 NAG 4471 E 1 HETATM 5 C C5 NAG . . . Q 4 127.839 54.045 49.358 1 88.04 ? C5 NAG 4471 E 1 HETATM 6 C C6 NAG . . . Q 4 127.765 54.597 50.763 1 87.72 ? C6 NAG 4471 E 1 HETATM 7 C C7 NAG . . . Q 4 126.848 51.202 45.026 1 100 ? C7 NAG 4471 E 1 HETATM 8 C C8 NAG . . . Q 4 127.419 50.823 43.664 1 100 ? C8 NAG 4471 E 1 HETATM 9 N N2 NAG . . . Q 4 127.622 51.949 45.813 1 97.74 ? N2 NAG 4471 E 1 HETATM 10 O O3 NAG . . . Q 4 125.777 54.183 46.273 1 92.28 ? O3 NAG 4471 E 1 HETATM 11 O O4 NAG . . . Q 4 126.44 55.841 48.48 1 90.88 ? O4 NAG 4471 E 1 HETATM 12 O O5 NAG . . . Q 4 127.929 52.61 49.462 1 84.77 ? O5 NAG 4471 E 1 HETATM 13 O O6 NAG . . . Q 4 128.895 55.409 51.043 1 89.93 ? O6 NAG 4471 E 1 HETATM 14 O O7 NAG . . . Q 4 125.722 50.809 45.356 1 100 ? O7 NAG 4471 E 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 95 _model_server_stats.query_time_ms 1161 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #