data_1G5Q # _model_server_result.job_id hj7FzgqeQMSAaU5Z4AXlvQ _model_server_result.datetime_utc '2024-11-16 06:31:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g5q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 1G5Q # _exptl.entry_id 1G5Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1G5Q _cell.length_a 223.552 _cell.length_b 223.552 _cell.length_c 223.552 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G5Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_645 -z+1,x-1/2,-y+1/2 0 0 -1 1 0 0 0 -1 0 223.552 -111.776 111.776 3 'crystal symmetry operation' 11_556 y+1/2,-z+1/2,-x+1 0 1 0 0 0 -1 -1 0 0 111.776 111.776 223.552 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 K N N ? 3 L N N ? 3 N N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 1G5Q _atom_sites.fract_transf_matrix[1][1] 0.004473 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004473 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004473 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 FMN A 1 300 300 FMN FMN . J 4 TRS A 1 402 2 TRS TRS . K 3 FMN D 1 301 300 FMN FMN . L 3 FMN G 1 302 300 FMN FMN . M 4 TRS G 1 401 1 TRS TRS . N 3 FMN L 1 303 300 FMN FMN . O 5 HOH A 1 403 5 HOH HOH . O 5 HOH A 2 404 9 HOH HOH . O 5 HOH A 3 405 17 HOH HOH . O 5 HOH A 4 406 28 HOH HOH . O 5 HOH A 5 407 29 HOH HOH . O 5 HOH A 6 408 30 HOH HOH . O 5 HOH A 7 409 32 HOH HOH . O 5 HOH A 8 410 38 HOH HOH . O 5 HOH A 9 411 41 HOH HOH . O 5 HOH A 10 412 47 HOH HOH . O 5 HOH A 11 413 48 HOH HOH . O 5 HOH A 12 414 51 HOH HOH . O 5 HOH A 13 415 55 HOH HOH . O 5 HOH A 14 416 56 HOH HOH . O 5 HOH A 15 417 57 HOH HOH . O 5 HOH A 16 418 60 HOH HOH . O 5 HOH A 17 419 67 HOH HOH . O 5 HOH A 18 420 75 HOH HOH . O 5 HOH A 19 421 76 HOH HOH . O 5 HOH A 20 422 79 HOH HOH . O 5 HOH A 21 423 86 HOH HOH . O 5 HOH A 22 424 109 HOH HOH . O 5 HOH A 23 425 114 HOH HOH . O 5 HOH A 24 426 119 HOH HOH . O 5 HOH A 25 427 120 HOH HOH . O 5 HOH A 26 428 129 HOH HOH . O 5 HOH A 27 429 130 HOH HOH . O 5 HOH A 28 430 133 HOH HOH . O 5 HOH A 29 431 136 HOH HOH . P 5 HOH D 1 302 1 HOH HOH . P 5 HOH D 2 303 4 HOH HOH . P 5 HOH D 3 304 10 HOH HOH . P 5 HOH D 4 305 11 HOH HOH . P 5 HOH D 5 306 12 HOH HOH . P 5 HOH D 6 307 19 HOH HOH . P 5 HOH D 7 308 21 HOH HOH . P 5 HOH D 8 309 22 HOH HOH . P 5 HOH D 9 310 25 HOH HOH . P 5 HOH D 10 311 31 HOH HOH . P 5 HOH D 11 312 33 HOH HOH . P 5 HOH D 12 313 34 HOH HOH . P 5 HOH D 13 314 42 HOH HOH . P 5 HOH D 14 315 43 HOH HOH . P 5 HOH D 15 316 45 HOH HOH . P 5 HOH D 16 317 49 HOH HOH . P 5 HOH D 17 318 50 HOH HOH . P 5 HOH D 18 319 53 HOH HOH . P 5 HOH D 19 320 59 HOH HOH . P 5 HOH D 20 321 64 HOH HOH . P 5 HOH D 21 322 65 HOH HOH . P 5 HOH D 22 323 66 HOH HOH . P 5 HOH D 23 324 68 HOH HOH . P 5 HOH D 24 325 72 HOH HOH . P 5 HOH D 25 326 80 HOH HOH . P 5 HOH D 26 327 81 HOH HOH . P 5 HOH D 27 328 82 HOH HOH . P 5 HOH D 28 329 83 HOH HOH . P 5 HOH D 29 330 85 HOH HOH . P 5 HOH D 30 331 87 HOH HOH . P 5 HOH D 31 332 88 HOH HOH . P 5 HOH D 32 333 89 HOH HOH . P 5 HOH D 33 334 92 HOH HOH . P 5 HOH D 34 335 96 HOH HOH . P 5 HOH D 35 336 97 HOH HOH . P 5 HOH D 36 337 98 HOH HOH . P 5 HOH D 37 338 99 HOH HOH . P 5 HOH D 38 339 101 HOH HOH . P 5 HOH D 39 340 105 HOH HOH . P 5 HOH D 40 341 112 HOH HOH . P 5 HOH D 41 342 113 HOH HOH . P 5 HOH D 42 343 115 HOH HOH . P 5 HOH D 43 344 117 HOH HOH . P 5 HOH D 44 345 121 HOH HOH . P 5 HOH D 45 346 122 HOH HOH . P 5 HOH D 46 347 124 HOH HOH . P 5 HOH D 47 348 132 HOH HOH . Q 5 HOH G 1 402 2 HOH HOH . Q 5 HOH G 2 403 3 HOH HOH . Q 5 HOH G 3 404 8 HOH HOH . Q 5 HOH G 4 405 13 HOH HOH . Q 5 HOH G 5 406 15 HOH HOH . Q 5 HOH G 6 407 16 HOH HOH . Q 5 HOH G 7 408 27 HOH HOH . Q 5 HOH G 8 409 36 HOH HOH . Q 5 HOH G 9 410 52 HOH HOH . Q 5 HOH G 10 411 54 HOH HOH . Q 5 HOH G 11 412 61 HOH HOH . Q 5 HOH G 12 413 62 HOH HOH . Q 5 HOH G 13 414 63 HOH HOH . Q 5 HOH G 14 415 71 HOH HOH . Q 5 HOH G 15 416 74 HOH HOH . Q 5 HOH G 16 417 77 HOH HOH . Q 5 HOH G 17 418 84 HOH HOH . Q 5 HOH G 18 419 100 HOH HOH . Q 5 HOH G 19 420 102 HOH HOH . Q 5 HOH G 20 421 107 HOH HOH . Q 5 HOH G 21 422 111 HOH HOH . Q 5 HOH G 22 423 123 HOH HOH . Q 5 HOH G 23 424 125 HOH HOH . Q 5 HOH G 24 425 126 HOH HOH . Q 5 HOH G 25 426 128 HOH HOH . Q 5 HOH G 26 427 131 HOH HOH . Q 5 HOH G 27 428 135 HOH HOH . R 5 HOH O 1 35 35 HOH HOH . R 5 HOH O 2 44 44 HOH HOH . R 5 HOH O 3 46 46 HOH HOH . S 5 HOH L 1 304 6 HOH HOH . S 5 HOH L 2 305 7 HOH HOH . S 5 HOH L 3 306 14 HOH HOH . S 5 HOH L 4 307 18 HOH HOH . S 5 HOH L 5 308 20 HOH HOH . S 5 HOH L 6 309 23 HOH HOH . S 5 HOH L 7 310 26 HOH HOH . S 5 HOH L 8 311 37 HOH HOH . S 5 HOH L 9 312 39 HOH HOH . S 5 HOH L 10 313 40 HOH HOH . S 5 HOH L 11 314 58 HOH HOH . S 5 HOH L 12 315 69 HOH HOH . S 5 HOH L 13 316 70 HOH HOH . S 5 HOH L 14 317 73 HOH HOH . S 5 HOH L 15 318 78 HOH HOH . S 5 HOH L 16 319 90 HOH HOH . S 5 HOH L 17 320 91 HOH HOH . S 5 HOH L 18 321 93 HOH HOH . S 5 HOH L 19 322 94 HOH HOH . S 5 HOH L 20 323 95 HOH HOH . S 5 HOH L 21 324 103 HOH HOH . S 5 HOH L 22 325 104 HOH HOH . S 5 HOH L 23 326 106 HOH HOH . S 5 HOH L 24 327 108 HOH HOH . S 5 HOH L 25 328 110 HOH HOH . S 5 HOH L 26 329 116 HOH HOH . S 5 HOH L 27 330 118 HOH HOH . S 5 HOH L 28 331 127 HOH HOH . S 5 HOH L 29 332 134 HOH HOH . T 5 HOH P 1 24 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . K 3 229.557 82.772 37.085 1 36.37 ? N1 FMN 301 D 1 HETATM 2 C C2 FMN . . . K 3 230.117 82.873 38.331 1 37.23 ? C2 FMN 301 D 1 HETATM 3 O O2 FMN . . . K 3 230.956 83.683 38.624 1 38.89 ? O2 FMN 301 D 1 HETATM 4 N N3 FMN . . . K 3 229.692 81.965 39.354 1 35.64 ? N3 FMN 301 D 1 HETATM 5 C C4 FMN . . . K 3 228.77 80.992 39.196 1 36.72 ? C4 FMN 301 D 1 HETATM 6 O O4 FMN . . . K 3 228.503 80.239 40.138 1 41.09 ? O4 FMN 301 D 1 HETATM 7 C C4A FMN . . . K 3 228.187 80.858 37.849 1 36.56 ? C4A FMN 301 D 1 HETATM 8 N N5 FMN . . . K 3 227.239 79.956 37.591 1 36.27 ? N5 FMN 301 D 1 HETATM 9 C C5A FMN . . . K 3 226.608 79.973 36.367 1 36.6 ? C5A FMN 301 D 1 HETATM 10 C C6 FMN . . . K 3 225.506 79.052 36.099 1 37.13 ? C6 FMN 301 D 1 HETATM 11 C C7 FMN . . . K 3 224.927 78.912 34.865 1 37.53 ? C7 FMN 301 D 1 HETATM 12 C C7M FMN . . . K 3 223.766 77.938 34.631 1 38.19 ? C7M FMN 301 D 1 HETATM 13 C C8 FMN . . . K 3 225.238 79.885 33.819 1 37.12 ? C8 FMN 301 D 1 HETATM 14 C C8M FMN . . . K 3 224.515 79.857 32.497 1 33.52 ? C8M FMN 301 D 1 HETATM 15 C C9 FMN . . . K 3 226.31 80.755 34.041 1 36.98 ? C9 FMN 301 D 1 HETATM 16 C C9A FMN . . . K 3 227.009 80.836 35.268 1 36.51 ? C9A FMN 301 D 1 HETATM 17 N N10 FMN . . . K 3 228.098 81.721 35.55 1 36.57 ? N10 FMN 301 D 1 HETATM 18 C C10 FMN . . . K 3 228.643 81.839 36.827 1 35.82 ? C10 FMN 301 D 1 HETATM 19 C C1' FMN . . . K 3 228.571 82.658 34.507 1 36.47 ? C1' FMN 301 D 1 HETATM 20 C C2' FMN . . . K 3 227.923 84.046 34.682 1 37.6 ? C2' FMN 301 D 1 HETATM 21 O O2' FMN . . . K 3 226.494 84.036 34.649 1 36.44 ? O2' FMN 301 D 1 HETATM 22 C C3' FMN . . . K 3 228.434 84.998 33.585 1 37.89 ? C3' FMN 301 D 1 HETATM 23 O O3' FMN . . . K 3 229.886 85.152 33.723 1 37.41 ? O3' FMN 301 D 1 HETATM 24 C C4' FMN . . . K 3 227.803 86.387 33.561 1 38.23 ? C4' FMN 301 D 1 HETATM 25 O O4' FMN . . . K 3 228.221 87.112 32.386 1 38.06 ? O4' FMN 301 D 1 HETATM 26 C C5' FMN . . . K 3 228.094 87.233 34.779 1 39.44 ? C5' FMN 301 D 1 HETATM 27 O O5' FMN . . . K 3 227.35 88.466 34.737 1 40.41 ? O5' FMN 301 D 1 HETATM 28 P P FMN . . . K 3 227.036 89.33 36.027 1 40.92 ? P FMN 301 D 1 HETATM 29 O O1P FMN . . . K 3 228.35 89.693 36.673 1 39.91 ? O1P FMN 301 D 1 HETATM 30 O O2P FMN . . . K 3 226.133 88.526 36.908 1 37.11 ? O2P FMN 301 D 1 HETATM 31 O O3P FMN . . . K 3 226.307 90.599 35.443 1 39.59 ? O3P FMN 301 D 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 422 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 31 #