data_1G6D # _model_server_result.job_id c34-ofMQLPTmMO74cRJ3xQ _model_server_result.datetime_utc '2024-12-26 15:22:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g6d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":13}' # _entry.id 1G6D # _exptl.entry_id 1G6D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1G6D _cell.length_a 27.92 _cell.length_b 44.09 _cell.length_c 53.22 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 44.09 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OP1 DC 1 A DC 1 1_555 B ZN ZN . A ZN 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc2 A OP1 DC 1 A DC 1 3_655 B ZN ZN . A ZN 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc3 A N7 DG 2 A DG 2 1_555 D ZN ZN . A ZN 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc4 A OP1 DG 10 A DG 10 6_565 B ZN ZN . A ZN 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc5 A OP1 DG 10 A DG 10 8_565 B ZN ZN . A ZN 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc6 A N7 DG 10 A DG 10 1_555 C ZN ZN . A ZN 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc7 B ZN ZN . A ZN 11 1_555 E O HOH . A HOH 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc8 B ZN ZN . A ZN 11 1_555 E O HOH . A HOH 25 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc9 C ZN ZN . A ZN 12 1_555 E O HOH . A HOH 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc10 C ZN ZN . A ZN 12 1_555 E O HOH . A HOH 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc11 C ZN ZN . A ZN 12 1_555 E O HOH . A HOH 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc12 C ZN ZN . A ZN 12 1_555 E O HOH . A HOH 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc13 C ZN ZN . A ZN 12 1_555 E O HOH . A HOH 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc14 D ZN ZN . A ZN 13 1_555 E O HOH . A HOH 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc15 D ZN ZN . A ZN 13 1_555 E O HOH . A HOH 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc16 D ZN ZN . A ZN 13 1_555 E O HOH . A HOH 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc17 D ZN ZN . A ZN 13 1_555 E O HOH . A HOH 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc18 D ZN ZN . A ZN 13 1_555 E O HOH . A HOH 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? hydrog WATSON-CRICK hydrog1 A N1 DG 2 A DG 2 1_555 A N3 DC 9 A DC 9 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 2 A DG 2 1_555 A O2 DC 9 A DC 9 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 2 A DG 2 1_555 A N4 DC 9 A DC 9 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 3 A DC 3 1_555 A N1 DG 8 A DG 8 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 3 A DC 3 1_555 A O6 DG 8 A DG 8 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 3 A DC 3 1_555 A N2 DG 8 A DG 8 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DA 4 A DA 4 1_555 A N3 DT 7 A DT 7 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N6 DA 4 A DA 4 1_555 A O4 DT 7 A DT 7 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DA 5 A DA 5 1_555 A N3 DT 6 A DT 6 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N6 DA 5 A DA 5 1_555 A O4 DT 6 A DT 6 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DT 6 A DT 6 1_555 A N1 DA 5 A DA 5 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 DT 6 A DT 6 1_555 A N6 DA 5 A DA 5 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DT 7 A DT 7 1_555 A N1 DA 4 A DA 4 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O4 DT 7 A DT 7 1_555 A N6 DA 4 A DA 4 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DG 8 A DG 8 1_555 A N3 DC 3 A DC 3 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N2 DG 8 A DG 8 1_555 A O2 DC 3 A DC 3 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O6 DG 8 A DG 8 1_555 A N4 DC 3 A DC 3 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DC 9 A DC 9 1_555 A N1 DG 2 A DG 2 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N4 DC 9 A DC 9 1_555 A O6 DG 2 A DG 2 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O2 DC 9 A DC 9 1_555 A N2 DG 2 A DG 2 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1G6D _atom_sites.fract_transf_matrix[1][1] 0.035817 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022681 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01879 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 11 11 ZN ZN . C 2 ZN A 1 12 12 ZN ZN . D 2 ZN A 1 13 13 ZN ZN . E 3 HOH A 1 14 12 HOH HOH . E 3 HOH A 2 15 13 HOH HOH . E 3 HOH A 3 16 14 HOH HOH . E 3 HOH A 4 17 15 HOH HOH . E 3 HOH A 5 18 16 HOH HOH . E 3 HOH A 6 19 17 HOH HOH . E 3 HOH A 7 20 18 HOH HOH . E 3 HOH A 8 21 19 HOH HOH . E 3 HOH A 9 22 20 HOH HOH . E 3 HOH A 10 23 21 HOH HOH . E 3 HOH A 11 24 114 HOH HOH . E 3 HOH A 12 25 115 HOH HOH . E 3 HOH A 13 26 116 HOH HOH . E 3 HOH A 14 27 117 HOH HOH . E 3 HOH A 15 28 118 HOH HOH . E 3 HOH A 16 29 119 HOH HOH . E 3 HOH A 17 30 120 HOH HOH . E 3 HOH A 18 31 121 HOH HOH . E 3 HOH A 19 32 122 HOH HOH . E 3 HOH A 20 33 123 HOH HOH . E 3 HOH A 21 34 124 HOH HOH . E 3 HOH A 22 35 125 HOH HOH . E 3 HOH A 23 36 126 HOH HOH . E 3 HOH A 24 37 127 HOH HOH . E 3 HOH A 25 38 128 HOH HOH . E 3 HOH A 26 39 129 HOH HOH . E 3 HOH A 27 40 130 HOH HOH . E 3 HOH A 28 41 131 HOH HOH . E 3 HOH A 29 42 132 HOH HOH . E 3 HOH A 30 43 133 HOH HOH . E 3 HOH A 31 44 134 HOH HOH . E 3 HOH A 32 45 135 HOH HOH . E 3 HOH A 33 46 136 HOH HOH . E 3 HOH A 34 47 137 HOH HOH . E 3 HOH A 35 48 138 HOH HOH . E 3 HOH A 36 49 139 HOH HOH . E 3 HOH A 37 50 140 HOH HOH . E 3 HOH A 38 51 141 HOH HOH . E 3 HOH A 39 52 142 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 2.907 _atom_site.Cartn_y 26.615 _atom_site.Cartn_z 12.189 _atom_site.occupancy 0.75 _atom_site.B_iso_or_equiv 25.64 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 13 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #