data_1G76 # _model_server_result.job_id ucUcYT4Bk4XRZcps9PqTuw _model_server_result.datetime_utc '2024-12-23 11:12:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g76 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":250}' # _entry.id 1G76 # _exptl.entry_id 1G76 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1G76 _cell.length_a 63.28 _cell.length_b 63.28 _cell.length_c 124.78 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G76 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 94.92 54.802088 41.593333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 1G76 _atom_sites.fract_transf_matrix[1][1] 0.015803 _atom_sites.fract_transf_matrix[1][2] 0.009124 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018247 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008014 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 280 280 PO4 PO4 . C 2 PO4 A 1 290 290 PO4 PO4 . D 3 FMN A 1 250 250 FMN FMN . E 4 PLP A 1 260 260 PLP PNP . F 5 HOH A 1 301 301 HOH HOH . F 5 HOH A 2 302 302 HOH HOH . F 5 HOH A 3 303 303 HOH HOH . F 5 HOH A 4 304 304 HOH HOH . F 5 HOH A 5 305 305 HOH HOH . F 5 HOH A 6 306 306 HOH HOH . F 5 HOH A 7 307 307 HOH HOH . F 5 HOH A 8 308 308 HOH HOH . F 5 HOH A 9 309 309 HOH HOH . F 5 HOH A 10 310 310 HOH HOH . F 5 HOH A 11 311 311 HOH HOH . F 5 HOH A 12 312 312 HOH HOH . F 5 HOH A 13 313 313 HOH HOH . F 5 HOH A 14 314 314 HOH HOH . F 5 HOH A 15 315 315 HOH HOH . F 5 HOH A 16 316 316 HOH HOH . F 5 HOH A 17 317 317 HOH HOH . F 5 HOH A 18 318 318 HOH HOH . F 5 HOH A 19 319 319 HOH HOH . F 5 HOH A 20 320 320 HOH HOH . F 5 HOH A 21 321 321 HOH HOH . F 5 HOH A 22 322 322 HOH HOH . F 5 HOH A 23 323 323 HOH HOH . F 5 HOH A 24 324 324 HOH HOH . F 5 HOH A 25 325 325 HOH HOH . F 5 HOH A 26 326 326 HOH HOH . F 5 HOH A 27 327 327 HOH HOH . F 5 HOH A 28 328 328 HOH HOH . F 5 HOH A 29 329 329 HOH HOH . F 5 HOH A 30 330 330 HOH HOH . F 5 HOH A 31 331 331 HOH HOH . F 5 HOH A 32 332 332 HOH HOH . F 5 HOH A 33 333 333 HOH HOH . F 5 HOH A 34 334 334 HOH HOH . F 5 HOH A 35 335 335 HOH HOH . F 5 HOH A 36 336 336 HOH HOH . F 5 HOH A 37 337 337 HOH HOH . F 5 HOH A 38 338 338 HOH HOH . F 5 HOH A 39 339 339 HOH HOH . F 5 HOH A 40 340 340 HOH HOH . F 5 HOH A 41 341 341 HOH HOH . F 5 HOH A 42 342 342 HOH HOH . F 5 HOH A 43 343 343 HOH HOH . F 5 HOH A 44 344 344 HOH HOH . F 5 HOH A 45 345 345 HOH HOH . F 5 HOH A 46 346 346 HOH HOH . F 5 HOH A 47 347 347 HOH HOH . F 5 HOH A 48 348 348 HOH HOH . F 5 HOH A 49 349 349 HOH HOH . F 5 HOH A 50 350 350 HOH HOH . F 5 HOH A 51 351 351 HOH HOH . F 5 HOH A 52 352 352 HOH HOH . F 5 HOH A 53 353 353 HOH HOH . F 5 HOH A 54 354 354 HOH HOH . F 5 HOH A 55 355 355 HOH HOH . F 5 HOH A 56 356 356 HOH HOH . F 5 HOH A 57 357 357 HOH HOH . F 5 HOH A 58 358 358 HOH HOH . F 5 HOH A 59 359 359 HOH HOH . F 5 HOH A 60 360 360 HOH HOH . F 5 HOH A 61 361 361 HOH HOH . F 5 HOH A 62 362 362 HOH HOH . F 5 HOH A 63 363 363 HOH HOH . F 5 HOH A 64 364 364 HOH HOH . F 5 HOH A 65 365 365 HOH HOH . F 5 HOH A 66 366 366 HOH HOH . F 5 HOH A 67 367 367 HOH HOH . F 5 HOH A 68 368 368 HOH HOH . F 5 HOH A 69 369 369 HOH HOH . F 5 HOH A 70 370 370 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 3 53.197 20.487 7.42 1 31.36 ? N1 FMN 250 A 1 HETATM 2 C C2 FMN . . . D 3 53.832 21.592 6.916 1 31.79 ? C2 FMN 250 A 1 HETATM 3 O O2 FMN . . . D 3 53.271 22.49 6.291 1 31.04 ? O2 FMN 250 A 1 HETATM 4 N N3 FMN . . . D 3 55.246 21.747 7.157 1 29.62 ? N3 FMN 250 A 1 HETATM 5 C C4 FMN . . . D 3 56.004 20.818 7.881 1 30.16 ? C4 FMN 250 A 1 HETATM 6 O O4 FMN . . . D 3 57.202 21.032 8.023 1 30.79 ? O4 FMN 250 A 1 HETATM 7 C C4A FMN . . . D 3 55.324 19.615 8.395 1 30.24 ? C4A FMN 250 A 1 HETATM 8 N N5 FMN . . . D 3 55.95 18.614 9.048 1 31.68 ? N5 FMN 250 A 1 HETATM 9 C C5A FMN . . . D 3 55.325 17.477 9.57 1 31.65 ? C5A FMN 250 A 1 HETATM 10 C C6 FMN . . . D 3 56.092 16.529 10.281 1 32.5 ? C6 FMN 250 A 1 HETATM 11 C C7 FMN . . . D 3 55.471 15.437 10.959 1 33.12 ? C7 FMN 250 A 1 HETATM 12 C C7M FMN . . . D 3 56.356 14.451 11.741 1 31.68 ? C7M FMN 250 A 1 HETATM 13 C C8 FMN . . . D 3 53.973 15.31 10.934 1 34.31 ? C8 FMN 250 A 1 HETATM 14 C C8M FMN . . . D 3 53.172 14.279 11.718 1 35.23 ? C8M FMN 250 A 1 HETATM 15 C C9 FMN . . . D 3 53.221 16.243 10.138 1 33.42 ? C9 FMN 250 A 1 HETATM 16 C C9A FMN . . . D 3 53.846 17.319 9.442 1 31.75 ? C9A FMN 250 A 1 HETATM 17 N N10 FMN . . . D 3 53.198 18.373 8.67 1 32.43 ? N10 FMN 250 A 1 HETATM 18 C C10 FMN . . . D 3 53.842 19.503 8.134 1 30.66 ? C10 FMN 250 A 1 HETATM 19 C C1' FMN . . . D 3 51.691 18.253 8.427 1 31.16 ? C1' FMN 250 A 1 HETATM 20 C C2' FMN . . . D 3 51.001 19.272 9.422 1 31.42 ? C2' FMN 250 A 1 HETATM 21 O O2' FMN . . . D 3 50.913 18.724 10.725 1 31.61 ? O2' FMN 250 A 1 HETATM 22 C C3' FMN . . . D 3 49.638 19.776 8.962 1 31.28 ? C3' FMN 250 A 1 HETATM 23 O O3' FMN . . . D 3 48.821 18.636 8.595 1 31.93 ? O3' FMN 250 A 1 HETATM 24 C C4' FMN . . . D 3 49.729 20.781 7.799 1 30.95 ? C4' FMN 250 A 1 HETATM 25 O O4' FMN . . . D 3 50.794 21.727 7.825 1 30.86 ? O4' FMN 250 A 1 HETATM 26 C C5' FMN . . . D 3 48.43 21.565 7.646 1 30.38 ? C5' FMN 250 A 1 HETATM 27 O O5' FMN . . . D 3 48.064 22.256 8.988 1 30.54 ? O5' FMN 250 A 1 HETATM 28 P P FMN . . . D 3 47.145 23.447 8.946 1 33.04 ? P FMN 250 A 1 HETATM 29 O O1P FMN . . . D 3 46.928 23.695 10.439 1 29.86 ? O1P FMN 250 A 1 HETATM 30 O O2P FMN . . . D 3 47.706 24.571 8.257 1 29.79 ? O2P FMN 250 A 1 HETATM 31 O O3P FMN . . . D 3 45.887 22.992 8.246 1 30.67 ? O3P FMN 250 A 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #